Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19010

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,110,220	-		DZA65_RS19005	0.56	-1.0
4,110,220	-		DZA65_RS19005	0.56	+2.0
4,110,220	-		DZA65_RS19005	0.56	+0.8
4,110,220	-		DZA65_RS19005	0.56	+0.8
4,110,220	-		DZA65_RS19005	0.56	+1.3
4,110,220	-		DZA65_RS19005	0.56	+0.0
4,110,220	-		DZA65_RS19005	0.56	+0.3
4,110,220	-		DZA65_RS19005	0.56	+1.0
4,110,220	-		DZA65_RS19005	0.56	+0.9
4,110,220	-		DZA65_RS19005	0.56	+1.0
4,110,220	-		DZA65_RS19005	0.56	+1.0
4,110,222	+		DZA65_RS19005	0.56	+0.0
4,110,223	-		DZA65_RS19005	0.56	-0.3
4,110,223	-		DZA65_RS19005	0.56	-1.6
4,110,223	-		DZA65_RS19005	0.56	+1.0
4,110,223	-		DZA65_RS19005	0.56	+0.0
4,110,223	-		DZA65_RS19005	0.56	-0.8
4,110,553	-				-1.6
4,110,599	-				+1.6
4,110,599	-				-0.5
4,110,602	-				+0.0
4,110,639	-				+0.0
4,110,656	-				+0.4
4,110,674	+				+0.8
4,110,675	-				+0.5
4,110,675	-				+0.9
4,110,707	-				-0.4
4,110,740	+				-1.6
4,110,740	+				-1.3
4,110,741	-				+0.0
4,110,741	-				-1.0
4,110,743	+				+1.2
4,110,785	+				+0.0
4,110,840	+		DZA65_RS22980	0.26	+1.6
4,110,861	+		DZA65_RS22980	0.36	-0.5
4,110,862	-		DZA65_RS22980	0.36	+1.4
4,110,903	+		DZA65_RS22980	0.55	+2.0
4,110,903	+		DZA65_RS22980	0.55	+0.2
4,110,903	+		DZA65_RS22980	0.55	-0.2
4,110,903	+		DZA65_RS22980	0.55	-1.0
4,110,904	-		DZA65_RS22980	0.56	-0.3
4,110,921	+		DZA65_RS22980	0.63	+0.0
4,110,921	+				+2.0
4,110,921	+		DZA65_RS22980	0.63	+0.9
4,110,921	+		DZA65_RS22980	0.63	+1.2
4,110,921	+		DZA65_RS22980	0.63	+1.5
4,110,921	+		DZA65_RS22980	0.63	+1.6
4,110,921	+		DZA65_RS22980	0.63	-1.1
4,110,921	+		DZA65_RS22980	0.63	+0.5
4,110,921	+		DZA65_RS22980	0.63	+0.7
4,110,921	+		DZA65_RS22980	0.63	+0.2
4,110,921	+		DZA65_RS22980	0.63	-0.6
4,110,921	+		DZA65_RS22980	0.63	+0.7
4,110,921	+		DZA65_RS22980	0.63	-0.8
4,110,921	+		DZA65_RS22980	0.63	+0.8
4,110,921	+		DZA65_RS22980	0.63	-1.1
4,110,921	+		DZA65_RS22980	0.63	-2.1
4,110,921	+		DZA65_RS22980	0.63	-2.7
4,110,921	+		DZA65_RS22980	0.63	+1.0
4,110,921	+		DZA65_RS22980	0.63	+2.0
4,110,922	-		DZA65_RS22980	0.64	+1.2
4,110,922	-		DZA65_RS22980	0.64	+1.4
4,110,922	-		DZA65_RS22980	0.64	+0.2
4,110,922	-		DZA65_RS22980	0.64	-1.3
4,110,922	-		DZA65_RS22980	0.64	-1.0
4,110,922	-		DZA65_RS22980	0.64	+0.6
4,110,922	-		DZA65_RS22980	0.64	-0.3
4,110,922	-		DZA65_RS22980	0.64	+1.5
4,110,922	-		DZA65_RS22980	0.64	-0.4
4,110,922	-		DZA65_RS22980	0.64	-1.0
4,110,922	-		DZA65_RS22980	0.64	+0.2
4,110,922	-		DZA65_RS22980	0.64	+0.8
4,110,922	-		DZA65_RS22980	0.64	-2.4
4,110,922	-		DZA65_RS22980	0.64	-1.6
4,110,925	+		DZA65_RS22980	0.65	+0.4
4,110,925	+		DZA65_RS22980	0.65	+0.7
4,110,925	+		DZA65_RS22980	0.65	-0.6
4,110,925	+		DZA65_RS22980	0.65	-1.8
4,110,925	+		DZA65_RS22980	0.65	+0.9
4,110,925	+		DZA65_RS22980	0.65	-1.0
4,110,926	-		DZA65_RS22980	0.66	-0.8
4,110,926	-				+1.0
4,110,926	-		DZA65_RS22980	0.66	-2.3
4,110,926	-				-1.8
4,110,926	-		DZA65_RS22980	0.66	+1.0
4,110,960	+		DZA65_RS22980	0.81	+2.2
4,110,961	-		DZA65_RS22980	0.82	+1.6
4,110,977	-		DZA65_RS22980	0.89	+0.6
4,110,981	+				-0.2
4,110,981	+				+0.9
4,110,981	+				+0.2
4,110,982	-				-0.3
4,110,982	-				-1.8
4,110,993	+				-1.6
4,111,013	+				+1.3
4,111,013	+				-0.2
4,111,013	+				+2.4
4,111,014	-				-0.8
4,111,014	-				+0.5
4,111,014	-				-1.6
4,111,014	-				+0.0
4,111,015	+				+0.3
4,111,015	+				-1.8
4,111,015	+				-1.1
4,111,016	-				-0.1
4,111,061	-				+0.0
4,111,061	-				-1.6
4,111,061	-				+0.5
4,111,123	+				+1.0
4,111,129	+				-0.6
4,111,129	+				-1.9
4,111,129	+				+0.7
4,111,129	+				+0.6
4,111,129	+				-0.2
4,111,130	-				-0.8
4,111,133	+				-1.0
4,111,133	+				-0.7
4,111,134	-				-1.6
4,111,134	-				-1.1
4,111,134	-				-0.1
4,111,134	-				+0.9
4,111,201	+				+1.3
4,111,201	+				-1.8
4,111,207	+				+0.9
4,111,207	+				+1.1
4,111,207	+				-0.4
4,111,208	-				-0.3
4,111,208	-				-1.6
4,111,208	-				-2.1
4,111,208	-				-2.6
4,111,208	-				-1.3
4,111,260	+				+2.0
4,111,260	+				+0.0
4,111,260	+				-0.2
4,111,260	+				-0.2
4,111,260	+				+0.4
4,111,261	-				+1.4
4,111,261	-				-1.3
4,111,261	-				-1.8
4,111,261	-				+0.6
4,111,261	-				-0.1
4,111,261	-				+0.2
4,111,261	-				+0.0
4,111,299	+				+0.1
4,111,299	+				+0.6
4,111,300	-				+0.0
4,111,452	-		DZA65_RS19010	0.18	-0.9
4,111,453	+		DZA65_RS19010	0.18	+0.7
4,111,453	+		DZA65_RS19010	0.18	-1.0
4,111,453	+		DZA65_RS19010	0.18	-0.2
4,111,454	-		DZA65_RS19010	0.18	-1.3
4,111,457	+		DZA65_RS19010	0.18	+0.7
4,111,457	+		DZA65_RS19010	0.18	-1.1
4,111,457	+		DZA65_RS19010	0.18	+1.2
4,111,458	-		DZA65_RS19010	0.19	-1.7
4,111,458	-		DZA65_RS19010	0.19	-1.4
4,111,465	+		DZA65_RS19010	0.19	-0.0
4,111,496	+		DZA65_RS19010	0.21	-1.1
4,111,496	+		DZA65_RS19010	0.21	-2.9
4,111,496	+		DZA65_RS19010	0.21	+0.8
4,111,497	-		DZA65_RS19010	0.21	+0.4
4,111,497	-		DZA65_RS19010	0.21	+0.7
4,111,508	+		DZA65_RS19010	0.22	+0.8
4,111,508	+		DZA65_RS19010	0.22	+1.5
4,111,508	+		DZA65_RS19010	0.22	+1.0
4,111,508	+		DZA65_RS19010	0.22	-0.6
4,111,508	+		DZA65_RS19010	0.22	+0.5
4,111,508	+		DZA65_RS19010	0.22	-0.7
4,111,508	+		DZA65_RS19010	0.22	+0.8
4,111,508	+		DZA65_RS19010	0.22	-1.8
4,111,509	-				-0.8
4,111,509	-		DZA65_RS19010	0.22	+0.2
4,111,509	-		DZA65_RS19010	0.22	-0.6
4,111,509	-		DZA65_RS19010	0.22	+0.6
4,111,550	+		DZA65_RS19010	0.25	-0.6
4,111,550	+		DZA65_RS19010	0.25	+0.3
4,111,550	+		DZA65_RS19010	0.25	+0.4
4,111,550	+		DZA65_RS19010	0.25	-1.3
4,111,550	+		DZA65_RS19010	0.25	-0.9
4,111,550	+		DZA65_RS19010	0.25	+1.0
4,111,550	+		DZA65_RS19010	0.25	-1.0
4,111,551	-		DZA65_RS19010	0.25	+0.6
4,111,551	-		DZA65_RS19010	0.25	+1.2
4,111,551	-		DZA65_RS19010	0.25	+1.0
4,111,551	-		DZA65_RS19010	0.25	-1.3
4,111,551	-		DZA65_RS19010	0.25	-1.0
4,111,551	-		DZA65_RS19010	0.25	+0.3
4,111,560	-		DZA65_RS19010	0.26	+1.5
4,111,646	+		DZA65_RS19010	0.33	-1.0
4,111,676	-		DZA65_RS19010	0.35	-0.9
4,111,684	-		DZA65_RS19010	0.35	-0.8
4,111,728	+		DZA65_RS19010	0.39	-1.2
4,111,728	+		DZA65_RS19010	0.39	+2.6
4,111,728	+		DZA65_RS19010	0.39	+0.3
4,111,728	+		DZA65_RS19010	0.39	-1.2
4,111,728	+		DZA65_RS19010	0.39	-2.4
4,111,728	+		DZA65_RS19010	0.39	+0.3
4,111,728	+		DZA65_RS19010	0.39	+2.4
4,111,728	+		DZA65_RS19010	0.39	+1.1
4,111,728	+		DZA65_RS19010	0.39	-1.6
4,111,728	+		DZA65_RS19010	0.39	-0.4
4,111,729	-		DZA65_RS19010	0.39	+1.4
4,111,729	-		DZA65_RS19010	0.39	+1.0
4,111,729	-		DZA65_RS19010	0.39	+2.8
4,111,729	-				+2.0
4,111,928	+		DZA65_RS19010	0.53	+1.4
4,111,929	-		DZA65_RS19010	0.54	-1.3
4,111,946	+		DZA65_RS19010	0.55	-0.3
4,111,946	+		DZA65_RS19010	0.55	-1.8
4,111,946	+		DZA65_RS19010	0.55	+1.0
4,111,946	+		DZA65_RS19010	0.55	-2.3
4,111,948	+		DZA65_RS19010	0.55	-0.3
4,111,949	-		DZA65_RS19010	0.55	+0.2
4,112,059	+		DZA65_RS19010	0.63	-0.2
4,112,060	-		DZA65_RS19010	0.63	+1.6
4,112,068	+		DZA65_RS19010	0.64	+1.0
4,112,069	-		DZA65_RS19010	0.64	+0.2
4,112,099	+		DZA65_RS19010	0.66	-1.6
4,112,099	+		DZA65_RS19010	0.66	+0.5
4,112,099	+		DZA65_RS19010	0.66	-1.1
4,112,099	+		DZA65_RS19010	0.66	-1.1
4,112,099	+		DZA65_RS19010	0.66	-0.1
4,112,099	+		DZA65_RS19010	0.66	-1.0
4,112,100	-		DZA65_RS19010	0.66	+1.2
4,112,100	-		DZA65_RS19010	0.66	-0.7
4,112,100	-		DZA65_RS19010	0.66	+2.0
4,112,100	-		DZA65_RS19010	0.66	+0.2
4,112,100	-		DZA65_RS19010	0.66	-1.8
4,112,100	-		DZA65_RS19010	0.66	-2.0
4,112,100	-		DZA65_RS19010	0.66	+0.0
4,112,100	-		DZA65_RS19010	0.66	-1.0
4,112,114	+		DZA65_RS19010	0.67	-2.5
4,112,114	+		DZA65_RS19010	0.67	+1.0
4,112,115	-		DZA65_RS19010	0.67	-1.0
4,112,115	-		DZA65_RS19010	0.67	+1.7
4,112,115	-		DZA65_RS19010	0.67	-1.3
4,112,119	+		DZA65_RS19010	0.68	-1.4
4,112,119	+		DZA65_RS19010	0.68	-0.6
4,112,119	+		DZA65_RS19010	0.68	-1.6
4,112,119	+		DZA65_RS19010	0.68	-1.3
4,112,120	-		DZA65_RS19010	0.68	+0.1
4,112,135	+		DZA65_RS19010	0.69	-2.1
4,112,136	-		DZA65_RS19010	0.69	-1.0
4,112,147	-		DZA65_RS19010	0.70	+0.6
4,112,147	-		DZA65_RS19010	0.70	-0.6
4,112,181	+		DZA65_RS19010	0.72	+0.0
4,112,182	-		DZA65_RS19010	0.72	+0.4
4,112,182	-		DZA65_RS19010	0.72	-1.3
4,112,255	+		DZA65_RS19010	0.78	-0.1
4,112,255	+		DZA65_RS19010	0.78	+2.0
4,112,255	+		DZA65_RS19010	0.78	-0.4
4,112,255	+		DZA65_RS19010	0.78	-1.0
4,112,255	+		DZA65_RS19010	0.78	-2.7
4,112,255	+		DZA65_RS19010	0.78	+1.6
4,112,255	+		DZA65_RS19010	0.78	-0.3
4,112,255	+		DZA65_RS19010	0.78	-0.2
4,112,255	+		DZA65_RS19010	0.78	-0.7
4,112,255	+		DZA65_RS19010	0.78	+0.2
4,112,256	-		DZA65_RS19010	0.78	-0.9
4,112,256	-		DZA65_RS19010	0.78	-0.8
4,112,256	-		DZA65_RS19010	0.78	+0.5
4,112,256	-		DZA65_RS19010	0.78	+1.4
4,112,256	-		DZA65_RS19010	0.78	-0.1
4,112,256	-		DZA65_RS19010	0.78	-0.3
4,112,256	-		DZA65_RS19010	0.78	+1.8
4,112,256	-		DZA65_RS19010	0.78	+0.1
4,112,363	-		DZA65_RS19010	0.86	+1.0
4,112,420	+				+1.7
4,112,420	+				+0.6
4,112,420	+				-2.3
4,112,420	+				-2.8
4,112,421	-				+1.3
4,112,421	-				-2.1
4,112,421	-				-1.8
4,112,421	-				+0.0
4,112,421	-				-0.2
4,112,421	-				+0.1
4,112,437	+				-1.6
4,112,438	-				-0.6
4,112,456	-				-1.8
4,112,462	+				+0.2
4,112,462	+				+2.0
4,112,462	+				+0.0
4,112,463	-				-0.3
4,112,463	-				+0.8
4,112,463	-				-1.3
4,112,463	-				+0.4
4,112,463	-				+0.4
4,112,463	-				+0.3
4,112,463	-				-0.2
4,112,463	-				+0.2
4,112,463	-				-1.8
4,112,552	+				-2.0
4,112,553	-				-0.6
4,112,568	+				+0.0
4,112,568	+				+0.2
4,112,568	+				-0.6
4,112,568	+				-0.8
4,112,568	+				+2.0
4,112,568	+				-0.4
4,112,568	+				-0.1
4,112,568	+				-1.8
4,112,568	+				-0.2
4,112,568	+				-0.5
4,112,568	+				+0.6
4,112,569	-				-3.1
4,112,569	-				-0.6
4,112,569	-				+0.4
4,112,569	-				-1.5
4,112,569	-				+0.5
4,112,571	+				-0.2
4,112,572	-				-0.6
4,112,572	-				-1.0
4,112,590	-				+0.0
4,112,609	+				-1.0
4,112,610	-				+1.4
4,112,610	-				+2.9
4,112,633	+				+1.0
4,112,634	-				+0.6
4,112,642	+				-0.3
4,112,643	-				+1.4
4,112,643	-				+0.7
4,112,643	-				-2.1
4,112,647	+				+0.5
4,112,647	+				+1.7
4,112,648	-				+1.0
4,112,651	+				+0.0
4,112,651	+				+0.0
4,112,652	-				-0.4
4,112,652	-				-1.3
4,112,680	+				+0.6
4,112,680	+				+1.2
4,112,681	-				+0.4
4,112,681	-				-2.0
4,112,681	-				-0.6
4,112,688	+				+0.5
4,112,689	-				-1.6
4,112,689	-				+0.8
4,112,693	+				-1.0
4,112,693	+				-0.1
4,112,693	+				+1.0
4,112,693	+				-1.8
4,112,693	+				-0.1
4,112,693	+				+1.7
4,112,694	-				+2.0
4,112,694	-				-0.3
4,112,694	-				+0.2
4,112,694	-				-1.0
4,112,694	-				+0.7
4,112,694	-				+0.0
4,112,694	-				-2.7
4,112,694	-				-1.0
4,112,697	+				-1.4
4,112,697	+				-2.6
4,112,697	+				+0.0
4,112,697	+				+1.4
4,112,697	+				-1.9
4,112,698	-				+0.8
4,112,698	-				-1.8
4,112,698	-				-1.3
4,112,784	+		DZA65_RS19015	0.13	-1.0
4,112,784	+		DZA65_RS19015	0.13	-0.7
4,112,785	-		DZA65_RS19015	0.13	+0.5
4,112,785	-		DZA65_RS19015	0.13	+2.4
4,112,910	-		DZA65_RS19015	0.27	+0.8
4,112,910	-		DZA65_RS19015	0.27	-0.4
4,112,956	+		DZA65_RS19015	0.33	+1.3
4,112,956	+		DZA65_RS19015	0.33	-0.1
4,112,957	-		DZA65_RS19015	0.33	+0.2
4,112,961	+		DZA65_RS19015	0.33	-1.3
4,112,977	-		DZA65_RS19015	0.35	-1.6
4,112,977	-		DZA65_RS19015	0.35	+0.6
4,113,015	-		DZA65_RS19015	0.40	-0.6
4,113,101	+		DZA65_RS19015	0.50	+0.4
4,113,101	+		DZA65_RS19015	0.50	+0.7
4,113,102	-		DZA65_RS19015	0.50	-0.3
4,113,146	-		DZA65_RS19015	0.55	-0.6
4,113,146	-		DZA65_RS19015	0.55	-1.3
4,113,251	+		DZA65_RS19015	0.67	+1.7
4,113,252	-		DZA65_RS19015	0.67	-0.1
4,113,252	-		DZA65_RS19015	0.67	+1.0
4,113,252	-		DZA65_RS19015	0.67	-2.1
4,113,252	-		DZA65_RS19015	0.67	+1.5
4,113,260	+		DZA65_RS19015	0.68	+0.6
4,113,260	+		DZA65_RS19015	0.68	-2.0
4,113,261	-		DZA65_RS19015	0.68	+1.6
4,113,261	-		DZA65_RS19015	0.68	+0.4
4,113,261	-		DZA65_RS19015	0.68	-1.3
4,113,261	-		DZA65_RS19015	0.68	-1.0
4,113,313	+		DZA65_RS19015	0.74	-0.6
4,113,313	+		DZA65_RS19015	0.74	+0.3
4,113,313	+		DZA65_RS19015	0.74	+1.2
4,113,314	-		DZA65_RS19015	0.75	+0.2
4,113,314	-		DZA65_RS19015	0.75	+0.4
4,113,314	-		DZA65_RS19015	0.75	+0.5
4,113,316	+		DZA65_RS19015	0.75	+1.7
4,113,316	+		DZA65_RS19015	0.75	-0.4
4,113,316	+		DZA65_RS19015	0.75	+0.4
4,113,316	+		DZA65_RS19015	0.75	-0.1
4,113,316	+		DZA65_RS19015	0.75	+0.7
4,113,316	+		DZA65_RS19015	0.75	-0.2
4,113,316	+		DZA65_RS19015	0.75	+0.5
4,113,316	+		DZA65_RS19015	0.75	+0.0
4,113,316	+		DZA65_RS19015	0.75	-1.0
4,113,316	+				-1.0
4,113,317	-		DZA65_RS19015	0.75	-1.0
4,113,317	-		DZA65_RS19015	0.75	-0.3
4,113,317	-		DZA65_RS19015	0.75	-2.8
4,113,317	-		DZA65_RS19015	0.75	-0.7
4,113,317	-		DZA65_RS19015	0.75	-2.0
4,113,317	-		DZA65_RS19015	0.75	-0.3
4,113,317	-		DZA65_RS19015	0.75	-0.5
4,113,317	-		DZA65_RS19015	0.75	-1.0
4,113,317	-		DZA65_RS19015	0.75	-3.1
4,113,317	-		DZA65_RS19015	0.75	-0.3
4,113,317	-		DZA65_RS19015	0.75	+0.3
4,113,409	+		DZA65_RS19015	0.86	+1.0
4,113,483	+				+0.9
4,113,483	+				+1.6
4,113,483	+				-1.6
4,113,484	-				-1.8
4,113,484	-				-0.1
4,113,514	+				-2.4
4,113,514	+				-0.6
4,113,515	-				+1.3
4,113,515	-				-1.3
4,113,519	+				+2.2
4,113,519	+				+1.3
4,113,519	+				-0.4
4,113,519	+				-0.5
4,113,520	-				-0.4
4,113,520	-				+2.6
4,113,520	-				+0.2
4,113,520	-				-1.3
4,113,520	-				-0.6
4,113,520	-				-1.0
4,113,523	+				+1.0
4,113,523	+				+0.2
4,113,523	+				-1.6
4,113,523	+				+1.1
4,113,523	+				+2.0
4,113,523	+				-1.8
4,113,523	+				+0.0
4,113,524	-				+0.5