Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16745

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,610,953	+		DZA65_RS16740	0.14	+0.6
3,611,117	+		DZA65_RS16740	0.29	-1.0
3,611,117	+		DZA65_RS16740	0.29	-0.6
3,611,117	+		DZA65_RS16740	0.29	-1.8
3,611,117	+		DZA65_RS16740	0.29	-1.2
3,611,118	-		DZA65_RS16740	0.29	+0.4
3,611,332	+		DZA65_RS16740	0.48	-1.2
3,611,332	+		DZA65_RS16740	0.48	+0.7
3,611,333	-		DZA65_RS16740	0.48	+1.1
3,611,333	-		DZA65_RS16740	0.48	-1.0
3,611,333	-		DZA65_RS16740	0.48	+0.4
3,611,333	-		DZA65_RS16740	0.48	-2.2
3,611,355	+		DZA65_RS16740	0.50	+0.4
3,611,355	+		DZA65_RS16740	0.50	-0.2
3,611,355	+		DZA65_RS16740	0.50	-2.8
3,611,355	+		DZA65_RS16740	0.50	-0.4
3,611,356	-		DZA65_RS16740	0.50	+0.8
3,611,356	-		DZA65_RS16740	0.50	-2.2
3,611,356	-		DZA65_RS16740	0.50	+0.2
3,611,356	-		DZA65_RS16740	0.50	-0.1
3,611,418	+		DZA65_RS16740	0.56	-0.1
3,611,419	-		DZA65_RS16740	0.56	-0.8
3,611,502	+		DZA65_RS16740	0.63	-2.8
3,611,574	+		DZA65_RS16740	0.70	+2.0
3,611,578	+		DZA65_RS16740	0.70	-1.8
3,611,578	+		DZA65_RS16740	0.70	-1.5
3,611,578	+		DZA65_RS16740	0.70	-0.8
3,611,578	+		DZA65_RS16740	0.70	+0.6
3,611,578	+		DZA65_RS16740	0.70	+2.8
3,611,578	+		DZA65_RS16740	0.70	-1.2
3,611,578	+		DZA65_RS16740	0.70	+1.2
3,611,578	+		DZA65_RS16740	0.70	-2.0
3,611,578	+		DZA65_RS16740	0.70	-1.2
3,611,578	+		DZA65_RS16740	0.70	-0.3
3,611,578	+		DZA65_RS16740	0.70	-0.5
3,611,578	+		DZA65_RS16740	0.70	-0.5
3,611,578	+		DZA65_RS16740	0.70	-0.8
3,611,578	+		DZA65_RS16740	0.70	+0.2
3,611,578	+		DZA65_RS16740	0.70	+0.2
3,611,578	+		DZA65_RS16740	0.70	-0.2
3,611,578	+		DZA65_RS16740	0.70	+0.8
3,611,578	+		DZA65_RS16740	0.70	-1.2
3,611,578	+		DZA65_RS16740	0.70	-1.8
3,611,578	+				+0.8
3,611,578	+		DZA65_RS16740	0.70	+1.0
3,611,579	-		DZA65_RS16740	0.70	+0.8
3,611,579	-		DZA65_RS16740	0.70	+0.5
3,611,579	-		DZA65_RS16740	0.70	-1.2
3,611,579	-		DZA65_RS16740	0.70	+0.0
3,611,579	-		DZA65_RS16740	0.70	+0.8
3,611,579	-		DZA65_RS16740	0.70	-0.2
3,611,579	-		DZA65_RS16740	0.70	-1.5
3,611,579	-		DZA65_RS16740	0.70	+0.3
3,611,579	-		DZA65_RS16740	0.70	+0.6
3,611,579	-		DZA65_RS16740	0.70	+0.6
3,611,579	-		DZA65_RS16740	0.70	+0.8
3,611,579	-		DZA65_RS16740	0.70	-0.5
3,611,579	-		DZA65_RS16740	0.70	+1.1
3,611,715	+		DZA65_RS16740	0.82	-3.2
3,611,731	+		DZA65_RS16740	0.83	+0.8
3,611,738	+		DZA65_RS16740	0.84	+0.1
3,611,739	-		DZA65_RS16740	0.84	+1.6
3,611,740	+		DZA65_RS16740	0.84	+0.5
3,611,740	+		DZA65_RS16740	0.84	+0.3
3,611,740	+		DZA65_RS16740	0.84	-0.0
3,611,740	+		DZA65_RS16740	0.84	+0.4
3,611,740	+		DZA65_RS16740	0.84	+0.4
3,611,740	+		DZA65_RS16740	0.84	-0.4
3,611,740	+		DZA65_RS16740	0.84	+1.4
3,611,740	+		DZA65_RS16740	0.84	+1.2
3,611,741	-		DZA65_RS16740	0.84	-1.5
3,611,741	-		DZA65_RS16740	0.84	+1.7
3,611,741	-		DZA65_RS16740	0.84	-1.6
3,611,741	-		DZA65_RS16740	0.84	-0.2
3,611,741	-		DZA65_RS16740	0.84	-0.2
3,611,752	+		DZA65_RS16740	0.85	-0.2
3,611,752	+		DZA65_RS16740	0.85	+1.8
3,611,752	+		DZA65_RS16740	0.85	+1.1
3,611,752	+		DZA65_RS16740	0.85	+1.8
3,611,752	+		DZA65_RS16740	0.85	+0.1
3,611,752	+		DZA65_RS16740	0.85	+0.8
3,611,752	+		DZA65_RS16740	0.85	-1.1
3,611,752	+		DZA65_RS16740	0.85	+1.7
3,611,752	+		DZA65_RS16740	0.85	-1.7
3,611,752	+		DZA65_RS16740	0.85	+1.6
3,611,752	+		DZA65_RS16740	0.85	-1.5
3,611,752	+		DZA65_RS16740	0.85	+0.8
3,611,753	-		DZA65_RS16740	0.85	-0.4
3,611,753	-		DZA65_RS16740	0.85	+0.2
3,611,753	-		DZA65_RS16740	0.85	-0.2
3,611,753	-		DZA65_RS16740	0.85	-1.3
3,611,753	-		DZA65_RS16740	0.85	+1.8
3,611,753	-		DZA65_RS16740	0.85	-1.2
3,611,753	-		DZA65_RS16740	0.85	-2.2
3,611,753	-		DZA65_RS16740	0.85	-0.8
3,611,753	-		DZA65_RS16740	0.85	+0.4
3,611,753	-		DZA65_RS16740	0.85	+2.4
3,611,753	-		DZA65_RS16740	0.85	+1.5
3,611,753	-		DZA65_RS16740	0.85	+1.3
3,611,753	-		DZA65_RS16740	0.85	-0.9
3,611,753	-		DZA65_RS16740	0.85	+0.2
3,611,754	+		DZA65_RS16740	0.86	+1.2
3,611,764	+		DZA65_RS16740	0.86	-0.8
3,611,764	+		DZA65_RS16740	0.86	-1.2
3,611,764	+		DZA65_RS16740	0.86	-1.5
3,611,765	-		DZA65_RS16740	0.86	+0.4
3,611,765	-		DZA65_RS16740	0.86	+1.6
3,611,765	-		DZA65_RS16740	0.86	-1.8
3,611,765	-		DZA65_RS16740	0.86	-0.8
3,611,765	-		DZA65_RS16740	0.86	+1.9
3,611,770	-		DZA65_RS16740	0.87	-1.8
3,611,770	-		DZA65_RS16740	0.87	+1.7
3,611,770	-		DZA65_RS16740	0.87	+1.2
3,611,785	+		DZA65_RS16740	0.88	+0.3
3,611,785	+		DZA65_RS16740	0.88	+2.4
3,611,785	+		DZA65_RS16740	0.88	+0.8
3,611,785	+		DZA65_RS16740	0.88	-0.7
3,611,786	-		DZA65_RS16740	0.88	-0.0
3,611,786	-		DZA65_RS16740	0.88	-0.1
3,611,786	-		DZA65_RS16740	0.88	-1.4
3,611,803	+		DZA65_RS16740	0.90	-1.0
3,611,838	+				+0.3
3,611,838	+				+1.9
3,611,839	-				+0.1
3,611,839	-				-1.5
3,611,842	+				+0.8
3,611,842	+				-2.0
3,611,842	+				+1.2
3,611,842	+				+0.4
3,611,842	+				-3.1
3,611,842	+				-1.6
3,611,842	+				+2.4
3,611,843	-				-2.2
3,611,843	-				-0.2
3,611,843	-				+0.0
3,611,843	-				+1.3
3,611,843	-				+0.2
3,611,843	-				+3.0
3,611,843	-				+0.8
3,611,843	-				+2.7
3,611,843	-				-1.2
3,611,843	-				+0.8
3,611,843	-				-0.8
3,611,848	+				+1.9
3,611,848	+				+0.3
3,611,848	+				+0.1
3,611,848	+				+0.2
3,611,848	+				-0.6
3,611,848	+				-1.2
3,611,848	+				-0.2
3,611,848	+				-3.4
3,611,848	+				+0.8
3,611,849	-				+2.5
3,611,849	-				+0.5
3,611,849	-				+0.1
3,611,849	-				-0.9
3,611,849	-				-0.7
3,611,850	+				+1.6
3,611,850	+				-0.1
3,611,850	+				-2.0
3,611,850	+				+2.3
3,611,850	+				-0.8
3,611,850	+				+0.3
3,611,850	+				-0.5
3,611,850	+				+2.8
3,611,850	+				+0.4
3,611,850	+				+0.5
3,611,850	+				+0.1
3,611,850	+				-1.2
3,611,850	+				+1.5
3,611,850	+				+1.4
3,611,850	+				-1.8
3,611,850	+				+1.7
3,611,850	+				+0.0
3,611,851	-				+1.4
3,611,851	-				+1.7
3,611,851	-				+2.1
3,611,851	-				-0.8
3,611,851	-				+0.2
3,611,851	-				-1.3
3,611,851	-				+0.8
3,611,851	-				+0.8
3,611,851	-				-0.0
3,611,851	-				+1.4
3,611,851	-				+0.0
3,611,865	+				-1.5
3,611,914	+				+0.8
3,611,914	+				+1.6
3,611,914	+				-0.8
3,611,915	-				-1.5
3,611,915	-				-1.4
3,611,915	-				+0.8
3,611,915	-				+0.1
3,611,915	-				-1.0
3,611,915	-				-0.2
3,611,927	+				-2.8
3,611,994	+				-0.1
3,611,995	-				-1.0
3,611,995	-				+2.0
3,612,035	+		DZA65_RS16745	0.11	-0.5
3,612,036	-		DZA65_RS16745	0.11	+1.4
3,612,098	+		DZA65_RS16745	0.16	-0.6
3,612,098	+		DZA65_RS16745	0.16	+2.8
3,612,098	+		DZA65_RS16745	0.16	+0.5
3,612,098	+		DZA65_RS16745	0.16	-2.5
3,612,098	+		DZA65_RS16745	0.16	+1.8
3,612,098	+		DZA65_RS16745	0.16	-0.1
3,612,098	+		DZA65_RS16745	0.16	+0.4
3,612,098	+		DZA65_RS16745	0.16	+0.4
3,612,098	+		DZA65_RS16745	0.16	+2.0
3,612,098	+		DZA65_RS16745	0.16	+1.2
3,612,098	+		DZA65_RS16745	0.16	+0.2
3,612,098	+		DZA65_RS16745	0.16	-0.9
3,612,098	+		DZA65_RS16745	0.16	+0.1
3,612,099	-		DZA65_RS16745	0.17	+0.0
3,612,099	-		DZA65_RS16745	0.17	+1.6
3,612,099	-		DZA65_RS16745	0.17	+1.1
3,612,099	-		DZA65_RS16745	0.17	+1.9
3,612,099	-		DZA65_RS16745	0.17	+0.1
3,612,099	-		DZA65_RS16745	0.17	-3.2
3,612,099	-		DZA65_RS16745	0.17	-1.5
3,612,099	-		DZA65_RS16745	0.17	+1.4
3,612,099	-		DZA65_RS16745	0.17	-1.8
3,612,099	-		DZA65_RS16745	0.17	-0.5
3,612,099	-		DZA65_RS16745	0.17	-0.2
3,612,099	-		DZA65_RS16745	0.17	-3.3
3,612,141	+		DZA65_RS16745	0.20	+1.3
3,612,197	+		DZA65_RS16745	0.26	-0.3
3,612,198	-		DZA65_RS16745	0.26	-0.9
3,612,198	-		DZA65_RS16745	0.26	+0.4
3,612,198	-		DZA65_RS16745	0.26	-2.2
3,612,198	-		DZA65_RS16745	0.26	+0.1
3,612,237	+		DZA65_RS16745	0.29	+0.8
3,612,237	+		DZA65_RS16745	0.29	+1.0
3,612,237	+		DZA65_RS16745	0.29	+1.9
3,612,238	-		DZA65_RS16745	0.29	-0.1
3,612,244	-		DZA65_RS16745	0.30	+1.8
3,612,449	+		DZA65_RS16745	0.49	+0.4
3,612,449	+		DZA65_RS16745	0.49	-0.2
3,612,449	+		DZA65_RS16745	0.49	-0.2
3,612,450	-		DZA65_RS16745	0.49	-0.3
3,612,450	-		DZA65_RS16745	0.49	-1.8
3,612,522	+		DZA65_RS16745	0.56	+1.1
3,612,522	+		DZA65_RS16745	0.56	+1.5
3,612,522	+		DZA65_RS16745	0.56	+0.3
3,612,522	+		DZA65_RS16745	0.56	+0.1
3,612,523	-		DZA65_RS16745	0.56	-2.7
3,612,698	+		DZA65_RS16745	0.72	+2.2
3,612,699	-		DZA65_RS16745	0.72	-1.4
3,612,717	+		DZA65_RS16745	0.74	+1.8
3,612,839	-		DZA65_RS16745	0.85	+2.5
3,612,975	+				+2.0
3,612,975	+				+0.8
3,612,975	+				+0.8
3,612,975	+				+1.0
3,612,975	+				+0.8
3,612,976	-				-0.8
3,612,976	-				+1.3
3,612,976	-				-0.4
3,612,976	-				+0.7
3,612,976	-				+0.1
3,612,976	-				-3.0
3,612,998	+				-1.5
3,612,998	+				-2.5
3,612,998	+				-0.8
3,612,998	+				-0.2
3,612,998	+				-0.8
3,612,998	+				+1.1
3,612,998	+				-1.2
3,612,998	+				-0.1
3,612,998	+				+0.4
3,612,998	+				+1.2
3,612,998	+				-1.2
3,612,998	+				-0.3
3,612,998	+				+1.4
3,612,998	+				+0.5
3,612,999	-				-0.8
3,612,999	-				-0.7
3,612,999	-				+0.2
3,612,999	-				+0.1
3,612,999	-				+0.0
3,612,999	-				+1.2
3,612,999	-				-1.0
3,612,999	-				-1.1
3,612,999	-				+0.5
3,612,999	-				-1.2
3,612,999	-				-0.8
3,612,999	-				+1.8
3,612,999	-				-1.5
3,612,999	-				+1.2
3,613,245	+		DZA65_RS16750	0.31	+2.2
3,613,245	+		DZA65_RS16750	0.31	+1.4
3,613,245	+		DZA65_RS16750	0.31	-1.4
3,613,245	+		DZA65_RS16750	0.31	-1.2
3,613,245	+		DZA65_RS16750	0.31	-1.8
3,613,246	-		DZA65_RS16750	0.31	-2.2
3,613,246	-		DZA65_RS16750	0.31	-0.4
3,613,246	-		DZA65_RS16750	0.31	-1.5
3,613,246	-		DZA65_RS16750	0.31	+2.8
3,613,246	-		DZA65_RS16750	0.31	-0.2
3,613,246	-		DZA65_RS16750	0.31	-1.5
3,613,246	-		DZA65_RS16750	0.31	-0.2
3,613,401	+		DZA65_RS16750	0.51	-1.3
3,613,402	-		DZA65_RS16750	0.51	-1.8
3,613,402	-		DZA65_RS16750	0.51	-0.2
3,613,402	-		DZA65_RS16750	0.51	+0.4
3,613,402	-		DZA65_RS16750	0.51	-0.3
3,613,402	-		DZA65_RS16750	0.51	-0.2
3,613,480	+		DZA65_RS16750	0.61	-0.2
3,613,481	-		DZA65_RS16750	0.61	-2.5
3,613,515	+		DZA65_RS16750	0.65	+1.5
3,613,515	+		DZA65_RS16750	0.65	-0.8
3,613,516	-		DZA65_RS16750	0.65	-1.4
3,613,537	+		DZA65_RS16750	0.68	-1.0
3,613,537	+		DZA65_RS16750	0.68	-2.2
3,613,537	+		DZA65_RS16750	0.68	+0.8
3,613,537	+		DZA65_RS16750	0.68	-3.0
3,613,537	+		DZA65_RS16750	0.68	+1.5
3,613,537	+		DZA65_RS16750	0.68	-1.5
3,613,537	+		DZA65_RS16750	0.68	+1.7
3,613,537	+		DZA65_RS16750	0.68	-2.7
3,613,537	+		DZA65_RS16750	0.68	-0.8
3,613,537	+		DZA65_RS16750	0.68	-0.5
3,613,537	+		DZA65_RS16750	0.68	-1.2
3,613,538	-		DZA65_RS16750	0.68	-1.5
3,613,538	-		DZA65_RS16750	0.68	-0.3
3,613,538	-		DZA65_RS16750	0.68	+1.3
3,613,538	-		DZA65_RS16750	0.68	+0.3
3,613,538	-		DZA65_RS16750	0.68	-1.8
3,613,538	-		DZA65_RS16750	0.68	+1.0
3,613,538	-		DZA65_RS16750	0.68	-0.8
3,613,538	-		DZA65_RS16750	0.68	+2.7
3,613,540	+		DZA65_RS16750	0.68	-1.7
3,613,540	+		DZA65_RS16750	0.68	+0.8
3,613,540	+		DZA65_RS16750	0.68	-0.2
3,613,540	+		DZA65_RS16750	0.68	+0.8
3,613,540	+		DZA65_RS16750	0.68	+1.7
3,613,541	-		DZA65_RS16750	0.68	-0.2
3,613,541	-		DZA65_RS16750	0.68	+0.4
3,613,541	-		DZA65_RS16750	0.68	+1.0
3,613,541	-		DZA65_RS16750	0.68	-0.6
3,613,541	-		DZA65_RS16750	0.68	+1.3
3,613,541	-		DZA65_RS16750	0.68	+0.4
3,613,541	-		DZA65_RS16750	0.68	-0.3
3,613,541	-		DZA65_RS16750	0.68	-0.8
3,613,566	-		DZA65_RS16750	0.72	-0.5
3,613,577	-		DZA65_RS16750	0.73	+1.3
3,613,577	-		DZA65_RS16750	0.73	+0.4
3,613,704	+		DZA65_RS16750	0.89	+1.0
3,613,704	+		DZA65_RS16750	0.89	-1.7
3,613,704	+		DZA65_RS16750	0.89	+0.3
3,613,704	+		DZA65_RS16750	0.89	-1.5
3,613,704	+		DZA65_RS16750	0.89	-1.0
3,613,704	+		DZA65_RS16750	0.89	+1.2
3,613,704	+				-0.0
3,613,705	-		DZA65_RS16750	0.89	+1.2
3,613,705	-		DZA65_RS16750	0.89	-1.8
3,613,788	+				+2.4
3,613,789	-				-0.7
3,613,813	+				+1.5
3,613,814	-				+0.2
3,613,814	-				+0.8
3,613,814	-				-1.2
3,613,885	-				-2.4
3,613,898	+				+0.1