Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15935

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,456,640	+		DZA65_RS15925	0.31	-1.4
3,456,640	+		DZA65_RS15925	0.31	-1.0
3,456,640	+		DZA65_RS15925	0.31	+0.4
3,456,640	+		DZA65_RS15925	0.31	-0.3
3,456,640	+		DZA65_RS15925	0.31	-0.8
3,456,640	+		DZA65_RS15925	0.31	-1.7
3,456,640	+		DZA65_RS15925	0.31	-1.8
3,456,640	+		DZA65_RS15925	0.31	-0.7
3,456,641	-		DZA65_RS15925	0.31	+1.5
3,456,641	-		DZA65_RS15925	0.31	+2.1
3,456,641	-		DZA65_RS15925	0.31	+1.7
3,456,641	-		DZA65_RS15925	0.31	-1.4
3,456,641	-		DZA65_RS15925	0.31	-0.6
3,456,641	-		DZA65_RS15925	0.31	+4.1
3,456,641	-		DZA65_RS15925	0.31	-1.8
3,456,641	-		DZA65_RS15925	0.31	+0.3
3,456,641	-		DZA65_RS15925	0.31	+0.3
3,456,641	-		DZA65_RS15925	0.31	+1.7
3,456,641	-		DZA65_RS15925	0.31	+1.7
3,456,641	-		DZA65_RS15925	0.31	+1.3
3,456,641	-		DZA65_RS15925	0.31	+1.2
3,456,641	-		DZA65_RS15925	0.31	-0.3
3,456,641	-		DZA65_RS15925	0.31	+1.2
3,456,642	+		DZA65_RS15925	0.32	-1.6
3,456,642	+		DZA65_RS15925	0.32	-1.3
3,456,642	+		DZA65_RS15925	0.32	+0.2
3,456,642	+		DZA65_RS15925	0.32	-2.1
3,456,642	+		DZA65_RS15925	0.32	-0.5
3,456,642	+		DZA65_RS15925	0.32	+0.7
3,456,643	-		DZA65_RS15925	0.32	-0.3
3,456,643	-		DZA65_RS15925	0.32	+0.7
3,456,643	-		DZA65_RS15925	0.32	+2.0
3,456,648	+		DZA65_RS15925	0.33	-0.3
3,456,648	+		DZA65_RS15925	0.33	+1.1
3,456,648	+		DZA65_RS15925	0.33	-0.3
3,456,648	+		DZA65_RS15925	0.33	+1.2
3,456,649	-		DZA65_RS15925	0.33	-0.6
3,456,669	-		DZA65_RS15925	0.36	+0.2
3,456,669	-		DZA65_RS15925	0.36	+0.2
3,456,669	-		DZA65_RS15925	0.36	+0.7
3,456,672	+		DZA65_RS15925	0.36	+1.5
3,456,672	+		DZA65_RS15925	0.36	-0.1
3,456,672	+		DZA65_RS15925	0.36	-1.8
3,456,672	+		DZA65_RS15925	0.36	+0.7
3,456,672	+				-1.3
3,456,673	-		DZA65_RS15925	0.37	+1.1
3,456,673	-				-1.8
3,456,673	-		DZA65_RS15925	0.37	+0.2
3,456,673	-		DZA65_RS15925	0.37	+0.2
3,456,673	-		DZA65_RS15925	0.37	+1.8
3,456,727	+		DZA65_RS15925	0.45	-1.3
3,456,744	+		DZA65_RS15925	0.48	-0.1
3,456,744	+		DZA65_RS15925	0.48	+0.7
3,456,745	-		DZA65_RS15925	0.48	-0.4
3,456,749	+		DZA65_RS15925	0.49	+1.3
3,456,750	-		DZA65_RS15925	0.49	-0.3
3,456,750	-		DZA65_RS15925	0.49	+3.9
3,456,822	+		DZA65_RS15925	0.60	-1.8
3,456,822	+		DZA65_RS15925	0.60	-0.6
3,456,823	-		DZA65_RS15925	0.60	-1.7
3,456,823	-		DZA65_RS15925	0.60	+0.7
3,456,932	-		DZA65_RS15925	0.78	-1.8
3,456,932	-		DZA65_RS15925	0.78	-1.8
3,456,947	+		DZA65_RS15925	0.80	-0.3
3,456,982	+		DZA65_RS15925	0.86	-0.9
3,456,982	+		DZA65_RS15925	0.86	-1.4
3,456,982	+		DZA65_RS15925	0.86	-0.1
3,456,982	+		DZA65_RS15925	0.86	-0.5
3,456,982	+				+0.1
3,456,982	+		DZA65_RS15925	0.86	+0.9
3,456,982	+		DZA65_RS15925	0.86	+0.0
3,456,982	+		DZA65_RS15925	0.86	-0.1
3,456,982	+		DZA65_RS15925	0.86	-0.4
3,456,982	+		DZA65_RS15925	0.86	+0.4
3,456,983	-		DZA65_RS15925	0.86	-1.7
3,456,983	-		DZA65_RS15925	0.86	+1.5
3,456,983	-		DZA65_RS15925	0.86	+0.3
3,456,983	-		DZA65_RS15925	0.86	+0.3
3,456,983	-		DZA65_RS15925	0.86	-0.7
3,456,983	-		DZA65_RS15925	0.86	-0.6
3,456,986	+		DZA65_RS15925	0.86	-0.3
3,456,986	+		DZA65_RS15925	0.86	+0.3
3,456,986	+		DZA65_RS15925	0.86	-2.0
3,456,986	+		DZA65_RS15925	0.86	+0.3
3,456,986	+		DZA65_RS15925	0.86	-0.3
3,456,986	+		DZA65_RS15925	0.86	+0.7
3,456,986	+				+2.5
3,456,986	+		DZA65_RS15925	0.86	+0.0
3,456,986	+		DZA65_RS15925	0.86	+0.1
3,456,986	+		DZA65_RS15925	0.86	-1.6
3,456,986	+		DZA65_RS15925	0.86	-2.6
3,456,986	+		DZA65_RS15925	0.86	+0.3
3,456,986	+		DZA65_RS15925	0.86	-0.8
3,456,986	+		DZA65_RS15925	0.86	+0.4
3,456,986	+		DZA65_RS15925	0.86	-1.3
3,456,986	+		DZA65_RS15925	0.86	+0.7
3,456,987	-		DZA65_RS15925	0.87	+0.2
3,456,987	-		DZA65_RS15925	0.87	+0.0
3,456,987	-		DZA65_RS15925	0.87	-1.6
3,456,987	-		DZA65_RS15925	0.87	-1.3
3,456,987	-		DZA65_RS15925	0.87	+0.4
3,456,987	-		DZA65_RS15925	0.87	-0.1
3,456,987	-		DZA65_RS15925	0.87	+0.5
3,456,987	-		DZA65_RS15925	0.87	-0.3
3,456,987	-		DZA65_RS15925	0.87	-0.8
3,456,987	-		DZA65_RS15925	0.87	-0.3
3,456,987	-		DZA65_RS15925	0.87	+0.7
3,457,021	+				-1.0
3,457,022	-				-0.8
3,457,022	-				+0.6
3,457,078	+				-1.7
3,457,090	+				-0.3
3,457,090	+				+0.7
3,457,093	+				-2.3
3,457,158	-				-0.3
3,457,163	+				-1.1
3,457,163	+				-0.3
3,457,163	+				+1.6
3,457,163	+				-0.5
3,457,164	-				-0.1
3,457,164	-				-1.6
3,457,164	-				+0.3
3,457,164	-				-0.7
3,457,164	-				+0.1
3,457,164	-				+1.6
3,457,170	+				+0.3
3,457,170	+				+0.5
3,457,171	-				+0.1
3,457,189	+				+0.5
3,457,189	+				-0.3
3,457,190	-				-0.3
3,457,190	-				-2.4
3,457,218	+				+0.3
3,457,219	-				-0.4
3,457,228	-				+1.1
3,457,316	+		DZA65_RS15930	0.20	+0.1
3,457,317	-		DZA65_RS15930	0.20	-2.4
3,457,317	-		DZA65_RS15930	0.20	-0.1
3,457,370	+		DZA65_RS15930	0.31	-2.2
3,457,371	-		DZA65_RS15930	0.32	+0.2
3,457,419	+		DZA65_RS15930	0.42	+0.3
3,457,419	+		DZA65_RS15930	0.42	-0.8
3,457,419	+		DZA65_RS15930	0.42	-1.7
3,457,419	+		DZA65_RS15930	0.42	-2.4
3,457,419	+		DZA65_RS15930	0.42	-0.1
3,457,419	+		DZA65_RS15930	0.42	-0.4
3,457,419	+		DZA65_RS15930	0.42	+0.2
3,457,419	+		DZA65_RS15930	0.42	-1.3
3,457,420	-		DZA65_RS15930	0.42	-1.6
3,457,420	-		DZA65_RS15930	0.42	+0.6
3,457,420	-		DZA65_RS15930	0.42	+0.7
3,457,447	+		DZA65_RS15930	0.48	+0.6
3,457,471	+		DZA65_RS15930	0.53	+0.3
3,457,471	+		DZA65_RS15930	0.53	+0.7
3,457,490	+		DZA65_RS15930	0.58	+0.7
3,457,490	+		DZA65_RS15930	0.58	-1.8
3,457,490	+		DZA65_RS15930	0.58	-2.7
3,457,491	-				-1.1
3,457,491	-				+2.7
3,457,491	-		DZA65_RS15930	0.58	-0.8
3,457,491	-		DZA65_RS15930	0.58	-2.8
3,457,491	-		DZA65_RS15930	0.58	+0.2
3,457,491	-		DZA65_RS15930	0.58	+3.3
3,457,502	-		DZA65_RS15930	0.60	-0.2
3,457,513	-		DZA65_RS15930	0.63	-0.8
3,457,524	+		DZA65_RS15930	0.65	-1.6
3,457,524	+		DZA65_RS15930	0.65	-0.6
3,457,544	+		DZA65_RS15930	0.69	+0.7
3,457,544	+		DZA65_RS15930	0.69	+1.2
3,457,545	-		DZA65_RS15930	0.69	+0.2
3,457,561	-		DZA65_RS15930	0.73	-1.1
3,457,573	+		DZA65_RS15930	0.76	+1.7
3,457,573	+		DZA65_RS15930	0.76	+2.4
3,457,574	-		DZA65_RS15930	0.76	+0.7
3,457,574	-		DZA65_RS15930	0.76	+0.3
3,457,591	+		DZA65_RS15930	0.80	+0.9
3,457,591	+		DZA65_RS15930	0.80	+1.5
3,457,591	+		DZA65_RS15930	0.80	+0.5
3,457,591	+				+0.7
3,457,592	-		DZA65_RS15930	0.80	+2.3
3,457,592	-		DZA65_RS15930	0.80	+0.9
3,457,707	-				+1.0
3,457,707	-				+0.2
3,457,720	+				+0.3
3,457,721	-				+0.3
3,457,721	-				-2.0
3,457,721	-				+0.6
3,457,721	-				+0.2
3,457,745	+		DZA65_RS15935	0.13	-0.9
3,457,746	-		DZA65_RS15935	0.13	-0.5
3,457,746	-		DZA65_RS15935	0.13	+0.2
3,457,746	-		DZA65_RS15935	0.13	-0.3
3,457,746	-		DZA65_RS15935	0.13	-0.2
3,457,747	+		DZA65_RS15935	0.13	+0.7
3,457,747	+		DZA65_RS15935	0.13	+0.4
3,457,747	+		DZA65_RS15935	0.13	-0.3
3,457,747	+		DZA65_RS15935	0.13	+1.0
3,457,747	+		DZA65_RS15935	0.13	+0.7
3,457,747	+		DZA65_RS15935	0.13	-0.3
3,457,747	+		DZA65_RS15935	0.13	+0.1
3,457,747	+		DZA65_RS15935	0.13	-0.9
3,457,747	+		DZA65_RS15935	0.13	-0.6
3,457,747	+		DZA65_RS15935	0.13	+0.2
3,457,747	+		DZA65_RS15935	0.13	-0.5
3,457,747	+		DZA65_RS15935	0.13	+1.1
3,457,747	+		DZA65_RS15935	0.13	-0.8
3,457,747	+		DZA65_RS15935	0.13	-0.4
3,457,747	+		DZA65_RS15935	0.13	+0.7
3,457,747	+		DZA65_RS15935	0.13	-1.0
3,457,748	-		DZA65_RS15935	0.13	+2.3
3,457,748	-		DZA65_RS15935	0.13	+0.6
3,457,748	-		DZA65_RS15935	0.13	+1.0
3,457,748	-		DZA65_RS15935	0.13	+1.1
3,457,748	-		DZA65_RS15935	0.13	-2.6
3,457,748	-		DZA65_RS15935	0.13	+0.7
3,457,748	-		DZA65_RS15935	0.13	-0.7
3,457,748	-		DZA65_RS15935	0.13	+0.7
3,457,748	-		DZA65_RS15935	0.13	+0.3
3,457,748	-		DZA65_RS15935	0.13	+1.0
3,457,748	-		DZA65_RS15935	0.13	-1.4
3,457,748	-		DZA65_RS15935	0.13	+1.7
3,457,748	-		DZA65_RS15935	0.13	-1.3
3,457,748	-		DZA65_RS15935	0.13	-0.6
3,457,748	-		DZA65_RS15935	0.13	+1.7
3,457,748	-		DZA65_RS15935	0.13	-0.3
3,457,752	+		DZA65_RS15935	0.13	+0.0
3,457,752	+		DZA65_RS15935	0.13	+0.2
3,457,753	-		DZA65_RS15935	0.13	+0.4
3,457,753	-		DZA65_RS15935	0.13	+0.7
3,457,753	-		DZA65_RS15935	0.13	-2.1
3,457,782	+		DZA65_RS15935	0.17	-0.1
3,457,823	-		DZA65_RS15935	0.21	+1.0
3,457,830	+		DZA65_RS15935	0.22	-0.4
3,457,830	+		DZA65_RS15935	0.22	-0.8
3,457,830	+		DZA65_RS15935	0.22	-0.3
3,457,830	+		DZA65_RS15935	0.22	-0.2
3,457,830	+		DZA65_RS15935	0.22	+1.5
3,457,830	+		DZA65_RS15935	0.22	+0.2
3,457,831	-		DZA65_RS15935	0.22	+0.2
3,457,831	-		DZA65_RS15935	0.22	-0.8
3,457,831	-		DZA65_RS15935	0.22	+0.6
3,457,831	-		DZA65_RS15935	0.22	-0.5
3,457,831	-		DZA65_RS15935	0.22	-1.8
3,457,831	-		DZA65_RS15935	0.22	-1.1
3,457,831	-		DZA65_RS15935	0.22	-2.8
3,457,848	+		DZA65_RS15935	0.24	+2.3
3,457,848	+		DZA65_RS15935	0.24	-0.8
3,457,849	-		DZA65_RS15935	0.24	+0.2
3,457,849	-		DZA65_RS15935	0.24	+1.6
3,457,849	-		DZA65_RS15935	0.24	-0.8
3,457,849	-		DZA65_RS15935	0.24	-1.3
3,457,849	-		DZA65_RS15935	0.24	-0.1
3,457,849	-		DZA65_RS15935	0.24	-0.1
3,457,889	+		DZA65_RS15935	0.29	+0.5
3,457,889	+		DZA65_RS15935	0.29	+0.5
3,457,889	+		DZA65_RS15935	0.29	+0.1
3,457,889	+		DZA65_RS15935	0.29	-0.5
3,457,890	-		DZA65_RS15935	0.29	+0.3
3,457,890	-		DZA65_RS15935	0.29	+0.1
3,457,890	-		DZA65_RS15935	0.29	+0.7
3,457,890	-		DZA65_RS15935	0.29	+0.1
3,457,893	+		DZA65_RS15935	0.29	+0.5
3,457,893	+		DZA65_RS15935	0.29	+1.9
3,457,893	+		DZA65_RS15935	0.29	-1.4
3,457,893	+		DZA65_RS15935	0.29	-1.6
3,457,893	+		DZA65_RS15935	0.29	+0.7
3,457,894	-		DZA65_RS15935	0.29	-1.3
3,457,894	-		DZA65_RS15935	0.29	+0.4
3,457,894	-		DZA65_RS15935	0.29	-1.6
3,457,894	-		DZA65_RS15935	0.29	+1.8
3,457,894	-		DZA65_RS15935	0.29	-0.3
3,457,894	-		DZA65_RS15935	0.29	-0.6
3,457,894	-		DZA65_RS15935	0.29	+0.7
3,457,917	+		DZA65_RS15935	0.32	-2.3
3,457,925	+		DZA65_RS15935	0.33	-0.8
3,458,007	+		DZA65_RS15935	0.42	+0.9
3,458,051	+		DZA65_RS15935	0.47	-0.8
3,458,051	+		DZA65_RS15935	0.47	-0.8
3,458,051	+		DZA65_RS15935	0.47	+1.5
3,458,052	-		DZA65_RS15935	0.47	+0.8
3,458,130	+		DZA65_RS15935	0.56	-0.8
3,458,130	+		DZA65_RS15935	0.56	-0.3
3,458,131	-		DZA65_RS15935	0.56	+0.2
3,458,138	+		DZA65_RS15935	0.57	-1.5
3,458,138	+		DZA65_RS15935	0.57	-0.1
3,458,208	+		DZA65_RS15935	0.65	+0.7
3,458,209	-		DZA65_RS15935	0.65	+2.3
3,458,209	-		DZA65_RS15935	0.65	-0.3
3,458,209	-		DZA65_RS15935	0.65	-0.1
3,458,322	+		DZA65_RS15935	0.78	-1.8
3,458,322	+		DZA65_RS15935	0.78	+1.6
3,458,322	+		DZA65_RS15935	0.78	+1.0
3,458,322	+		DZA65_RS15935	0.78	+0.7
3,458,322	+		DZA65_RS15935	0.78	-1.6
3,458,338	+		DZA65_RS15935	0.80	+0.2
3,458,339	-		DZA65_RS15935	0.80	+0.5
3,458,342	+		DZA65_RS15935	0.81	+1.2
3,458,342	+		DZA65_RS15935	0.81	+0.7
3,458,342	+		DZA65_RS15935	0.81	-0.3
3,458,342	+		DZA65_RS15935	0.81	-1.3
3,458,342	+		DZA65_RS15935	0.81	+0.7
3,458,342	+		DZA65_RS15935	0.81	+1.6
3,458,342	+		DZA65_RS15935	0.81	+0.8
3,458,343	-		DZA65_RS15935	0.81	+0.4
3,458,343	-		DZA65_RS15935	0.81	+1.7
3,458,343	-		DZA65_RS15935	0.81	-0.7
3,458,343	-				-0.1
3,458,343	-		DZA65_RS15935	0.81	-0.8
3,458,343	-		DZA65_RS15935	0.81	+1.7
3,458,343	-		DZA65_RS15935	0.81	-1.1
3,458,365	-		DZA65_RS15935	0.83	+0.7
3,458,427	+				-0.8
3,458,433	+				-0.1
3,458,433	+				+0.6
3,458,433	+				+0.2
3,458,433	+				+1.5
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3,458,433	+				-1.3
3,458,433	+				-1.7
3,458,433	+				-2.3
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3,458,434	-				+1.7
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3,458,434	-				+2.3
3,458,434	-				-1.6
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3,458,480	+				-1.4
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3,458,481	-				+0.0
3,458,481	-				+1.9
3,458,482	+				-1.4
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3,458,487	-				-2.3
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3,458,487	-				-0.3
3,458,620	+				-0.7
3,458,664	+				-1.1
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3,458,674	+				-3.1
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3,458,953	-		DZA65_RS15940	0.12	+1.5
3,458,957	+		DZA65_RS15940	0.12	+0.2
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3,458,958	-		DZA65_RS15940	0.12	-0.8
3,458,994	+		DZA65_RS15940	0.15	+0.2
3,458,995	-		DZA65_RS15940	0.15	+1.4
3,459,078	+		DZA65_RS15940	0.22	+0.2
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3,459,078	+		DZA65_RS15940	0.22	+0.8
3,459,078	+		DZA65_RS15940	0.22	-1.1
3,459,079	-		DZA65_RS15940	0.22	+1.7
3,459,082	+		DZA65_RS15940	0.22	-0.2
3,459,082	+		DZA65_RS15940	0.22	-1.2
3,459,082	+		DZA65_RS15940	0.22	-2.2
3,459,082	+		DZA65_RS15940	0.22	-1.8
3,459,083	-		DZA65_RS15940	0.23	+0.3
3,459,083	-		DZA65_RS15940	0.23	-0.1
3,459,083	-		DZA65_RS15940	0.23	-0.0
3,459,121	-		DZA65_RS15940	0.26	+1.4
3,459,476	+		DZA65_RS15940	0.55	+0.1
3,459,476	+		DZA65_RS15940	0.55	+1.9
3,459,476	+		DZA65_RS15940	0.55	-0.4
3,459,477	-		DZA65_RS15940	0.55	+1.8