Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12610

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,699,003	+		DZA65_RS12600	0.85	+0.7
2,699,004	-		DZA65_RS12600	0.86	+0.3
2,699,004	-		DZA65_RS12600	0.86	+0.5
2,699,037	+		DZA65_RS12600	0.89	+1.0
2,699,037	+		DZA65_RS12600	0.89	-2.3
2,699,132	+				-1.3
2,699,132	+				+1.9
2,699,133	-				-0.4
2,699,133	-				+0.5
2,699,268	+		DZA65_RS12605	0.23	+0.1
2,699,269	-		DZA65_RS12605	0.23	-1.8
2,699,269	-		DZA65_RS12605	0.23	+1.5
2,699,269	-		DZA65_RS12605	0.23	+0.1
2,699,572	+		DZA65_RS12605	0.73	+0.5
2,699,623	-		DZA65_RS12605	0.81	-1.0
2,699,623	-		DZA65_RS12605	0.81	+0.3
2,699,623	-		DZA65_RS12605	0.81	+1.3
2,699,624	+		DZA65_RS12605	0.81	+0.5
2,699,646	+		DZA65_RS12605	0.85	-1.8
2,699,646	+		DZA65_RS12605	0.85	+0.5
2,699,647	-		DZA65_RS12605	0.85	+0.5
2,699,647	-		DZA65_RS12605	0.85	+1.8
2,699,652	+		DZA65_RS12605	0.86	+2.1
2,699,652	+		DZA65_RS12605	0.86	+0.5
2,699,653	-		DZA65_RS12605	0.86	-0.5
2,699,653	-		DZA65_RS12605	0.86	+1.3
2,699,653	-		DZA65_RS12605	0.86	-0.5
2,699,653	-		DZA65_RS12605	0.86	-0.5
2,699,855	+				-1.0
2,699,855	+				+0.7
2,699,855	+				+0.1
2,699,856	-				-2.3
2,699,856	-				+0.2
2,699,858	+				-1.6
2,699,858	+				-2.3
2,699,859	-				-0.0
2,699,859	-				-0.5
2,699,859	-				-0.0
2,699,899	+				-1.5
2,699,899	+				+0.2
2,699,949	+				+1.3
2,699,949	+				-0.5
2,699,970	+				-2.0
2,699,970	+				+0.5
2,699,984	-				+0.5
2,699,990	+				+0.9
2,699,990	+				+0.2
2,700,064	+				-0.5
2,700,153	+		DZA65_RS12610	0.15	+0.5
2,700,154	-		DZA65_RS12610	0.15	+1.2
2,700,154	-		DZA65_RS12610	0.15	-0.1
2,700,157	+		DZA65_RS12610	0.15	-0.7
2,700,157	+		DZA65_RS12610	0.15	-1.0
2,700,305	+		DZA65_RS12610	0.28	-1.0
2,700,305	+		DZA65_RS12610	0.28	-2.3
2,700,305	+		DZA65_RS12610	0.28	+0.1
2,700,305	+		DZA65_RS12610	0.28	+0.1
2,700,305	+		DZA65_RS12610	0.28	-2.0
2,700,306	-		DZA65_RS12610	0.28	-2.8
2,700,306	-		DZA65_RS12610	0.28	+0.8
2,700,306	-		DZA65_RS12610	0.28	-2.3
2,700,306	-		DZA65_RS12610	0.28	-0.5
2,700,306	-		DZA65_RS12610	0.28	-0.5
2,700,306	-		DZA65_RS12610	0.28	-1.0
2,700,306	-		DZA65_RS12610	0.28	+0.1
2,700,307	+		DZA65_RS12610	0.28	-0.7
2,700,308	-		DZA65_RS12610	0.28	-0.3
2,700,428	+		DZA65_RS12610	0.39	-0.5
2,700,429	-		DZA65_RS12610	0.39	+1.1
2,700,429	-		DZA65_RS12610	0.39	-1.0
2,700,439	+		DZA65_RS12610	0.40	-2.0
2,700,449	-		DZA65_RS12610	0.41	-0.8
2,700,516	-		DZA65_RS12610	0.46	+1.0
2,700,516	-		DZA65_RS12610	0.46	-0.2
2,700,862	+		DZA65_RS12610	0.76	+1.4
2,700,965	+		DZA65_RS12610	0.85	-1.8
2,700,966	-		DZA65_RS12610	0.85	-0.7
2,700,966	-		DZA65_RS12610	0.85	+0.1
2,700,966	-		DZA65_RS12610	0.85	+0.2
2,700,966	-		DZA65_RS12610	0.85	-1.0
2,700,970	+				-1.0
2,700,970	+		DZA65_RS12610	0.85	-2.0
2,700,970	+		DZA65_RS12610	0.85	-2.6
2,700,971	-		DZA65_RS12610	0.86	-0.9
2,700,971	-		DZA65_RS12610	0.86	+1.7
2,700,971	-		DZA65_RS12610	0.86	+0.9
2,701,009	+		DZA65_RS12610	0.89	-1.0
2,701,054	+				-0.3
2,701,054	+				+0.5
2,701,055	-				-1.0
2,701,058	+				+0.0
2,701,058	+				-1.5
2,701,067	-				+1.4
2,701,114	+				+2.0
2,701,115	-				+0.5
2,701,118	+				+1.8
2,701,118	+				-0.5
2,701,118	+				+0.1
2,701,118	+				+2.1
2,701,118	+				+1.0
2,701,118	+				+0.6
2,701,118	+				-0.5
2,701,118	+				-0.5
2,701,119	-				+0.7
2,701,119	-				-0.7
2,701,119	-				-0.7
2,701,119	-				+1.5
2,701,193	-				+2.5
2,701,203	+				+1.3
2,701,203	+				-0.3
2,701,203	+				-1.0
2,701,203	+				-1.8
2,701,204	-				-1.8
2,701,204	-				+1.2
2,701,204	-				-1.3
2,701,204	-				+1.4
2,701,205	+				-0.0
2,701,206	-				+1.7
2,701,206	-				+0.1
2,701,262	+				-2.8
2,701,262	+				-0.5
2,701,262	+				+0.1
2,701,263	-				-1.5
2,701,263	-				+1.7
2,701,263	-				-0.6
2,701,264	+				-1.0
2,701,264	+				-0.9
2,701,264	+				+0.7
2,701,264	+				+0.9
2,701,265	-				+0.5
2,701,265	-				-1.5
2,701,265	-				-2.8
2,701,265	-				+0.5
2,701,265	-				-1.5
2,701,265	-				+0.5
2,701,265	-				-2.0
2,701,267	+				-2.0
2,701,267	+				-1.5
2,701,267	+				-0.0
2,701,267	+				+0.4
2,701,267	+				-1.8
2,701,268	-				-2.3
2,701,268	-				-0.9
2,701,268	-				-1.0
2,701,268	-				-2.3
2,701,268	-				+0.0
2,701,268	-				+0.2
2,701,268	-				-0.6
2,701,268	-				+1.3
2,701,268	-				-1.5
2,701,290	+				-0.3
2,701,291	-				-1.0
2,701,291	-				+0.1
2,701,291	-				+0.3
2,701,294	-				-0.5
2,701,302	-				-1.7
2,701,353	-				+1.7
2,701,417	+				+0.4
2,701,425	+				-0.3
2,701,426	-				-3.6
2,701,426	-				+1.1
2,701,453	+				+0.1
2,701,453	+				-0.3
2,701,454	-				+1.5
2,701,461	+				+0.9
2,701,462	-				-0.5
2,701,521	+		DZA65_RS12615	0.13	-0.3
2,701,602	+		DZA65_RS12615	0.19	+0.1
2,701,684	-		DZA65_RS12615	0.25	+0.8
2,701,796	+		DZA65_RS12615	0.34	-0.3
2,701,873	+		DZA65_RS12615	0.39	+1.3
2,701,873	+		DZA65_RS12615	0.39	-0.2
2,701,874	-		DZA65_RS12615	0.39	-1.1
2,701,983	+		DZA65_RS12615	0.47	+1.3
2,701,983	+		DZA65_RS12615	0.47	-2.5
2,701,984	-		DZA65_RS12615	0.48	+1.7
2,701,998	+		DZA65_RS12615	0.49	+2.4
2,702,061	+		DZA65_RS12615	0.53	+0.8
2,702,062	-		DZA65_RS12615	0.53	+0.2
2,702,104	-		DZA65_RS12615	0.56	-0.6