Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11760

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,509,144	+		DZA65_RS11755	0.27	-1.1
2,509,207	+		DZA65_RS11755	0.33	+0.2
2,509,228	+		DZA65_RS11755	0.36	-2.3
2,509,228	+		DZA65_RS11755	0.36	+0.8
2,509,228	+		DZA65_RS11755	0.36	+0.8
2,509,228	+		DZA65_RS11755	0.36	-1.5
2,509,228	+		DZA65_RS11755	0.36	+0.5
2,509,228	+		DZA65_RS11755	0.36	-0.5
2,509,229	-		DZA65_RS11755	0.36	-2.1
2,509,229	-		DZA65_RS11755	0.36	-2.8
2,509,229	-		DZA65_RS11755	0.36	+0.7
2,509,229	-		DZA65_RS11755	0.36	-0.5
2,509,233	+		DZA65_RS11755	0.36	+1.1
2,509,233	+		DZA65_RS11755	0.36	-1.5
2,509,234	-		DZA65_RS11755	0.36	+0.1
2,509,234	-		DZA65_RS11755	0.36	+1.1
2,509,295	+		DZA65_RS11755	0.43	-0.8
2,509,295	+		DZA65_RS11755	0.43	+1.2
2,509,296	-		DZA65_RS11755	0.43	+0.6
2,509,296	-		DZA65_RS11755	0.43	+0.3
2,509,443	+		DZA65_RS11755	0.58	+0.9
2,509,443	+		DZA65_RS11755	0.58	+0.5
2,509,444	-		DZA65_RS11755	0.58	-1.5
2,509,444	-		DZA65_RS11755	0.58	-0.5
2,509,445	+		DZA65_RS11755	0.58	-1.7
2,509,445	+		DZA65_RS11755	0.58	+0.7
2,509,445	+		DZA65_RS11755	0.58	+1.6
2,509,445	+		DZA65_RS11755	0.58	+0.3
2,509,445	+		DZA65_RS11755	0.58	+0.5
2,509,445	+		DZA65_RS11755	0.58	+0.5
2,509,445	+				+0.1
2,509,445	+		DZA65_RS11755	0.58	-0.6
2,509,445	+		DZA65_RS11755	0.58	+0.0
2,509,445	+		DZA65_RS11755	0.58	-0.2
2,509,446	-		DZA65_RS11755	0.58	+0.8
2,509,446	-		DZA65_RS11755	0.58	-0.5
2,509,446	-		DZA65_RS11755	0.58	+0.0
2,509,446	-		DZA65_RS11755	0.58	-0.2
2,509,446	-		DZA65_RS11755	0.58	-0.8
2,509,446	-		DZA65_RS11755	0.58	-0.4
2,509,446	-		DZA65_RS11755	0.58	+0.5
2,509,446	-		DZA65_RS11755	0.58	+1.3
2,509,446	-		DZA65_RS11755	0.58	+0.1
2,509,446	-		DZA65_RS11755	0.58	-1.1
2,509,570	+		DZA65_RS11755	0.71	+0.5
2,509,571	-		DZA65_RS11755	0.71	+0.0
2,509,649	+		DZA65_RS11755	0.79	+0.5
2,509,649	+		DZA65_RS11755	0.79	-0.3
2,509,771	-				-0.7
2,509,771	-				-2.5
2,509,800	-				+2.3
2,509,800	-				+0.9
2,509,884	+				+1.4
2,509,884	+				+0.5
2,509,884	+				+0.8
2,509,884	+				+0.4
2,509,884	+				-0.7
2,509,884	+				+4.2
2,509,885	-				-2.1
2,509,885	-				-0.1
2,509,885	-				+0.5
2,509,894	+				+0.2
2,509,894	+				-0.5
2,510,150	+		DZA65_RS11760	0.38	-1.1
2,510,150	+		DZA65_RS11760	0.38	+3.1
2,510,184	+		DZA65_RS11760	0.44	+0.3
2,510,184	+		DZA65_RS11760	0.44	+1.7
2,510,184	+		DZA65_RS11760	0.44	+0.5
2,510,184	+		DZA65_RS11760	0.44	+0.6
2,510,184	+		DZA65_RS11760	0.44	-1.5
2,510,184	+		DZA65_RS11760	0.44	-0.2
2,510,184	+		DZA65_RS11760	0.44	+0.2
2,510,184	+		DZA65_RS11760	0.44	+0.1
2,510,185	-		DZA65_RS11760	0.44	+1.5
2,510,185	-		DZA65_RS11760	0.44	+0.2
2,510,185	-		DZA65_RS11760	0.44	+0.9
2,510,236	-		DZA65_RS11760	0.53	-0.1
2,510,243	+		DZA65_RS11760	0.54	-1.8
2,510,243	+		DZA65_RS11760	0.54	-1.5
2,510,243	+		DZA65_RS11760	0.54	+0.9
2,510,243	+				-0.3
2,510,244	-		DZA65_RS11760	0.54	+0.5
2,510,244	-		DZA65_RS11760	0.54	-0.5
2,510,260	+		DZA65_RS11760	0.57	-1.8
2,510,261	-				-1.1
2,510,261	-				-0.7
2,510,261	-		DZA65_RS11760	0.57	+0.8
2,510,261	-		DZA65_RS11760	0.57	-1.1
2,510,398	+		DZA65_RS11760	0.81	-1.0
2,510,398	+		DZA65_RS11760	0.81	+0.4
2,510,399	-		DZA65_RS11760	0.81	-1.5
2,510,399	-		DZA65_RS11760	0.81	+1.4
2,510,399	-		DZA65_RS11760	0.81	-1.1
2,510,399	-		DZA65_RS11760	0.81	-2.1
2,510,399	-		DZA65_RS11760	0.81	-0.1
2,510,399	-		DZA65_RS11760	0.81	+0.0
2,510,407	+		DZA65_RS11760	0.83	-1.2
2,510,407	+		DZA65_RS11760	0.83	-0.5
2,510,408	-		DZA65_RS11760	0.83	-1.2
2,510,494	+				+0.5
2,510,494	+				+1.5
2,510,520	-				+0.5
2,510,544	-				-1.1
2,510,544	-				-3.8
2,510,544	-				-0.1
2,510,544	-				+0.0
2,510,544	-				-0.1
2,510,547	+				+1.0
2,510,547	+				+0.2
2,510,548	-				-0.1
2,510,548	-				+0.3
2,510,548	-				+0.1
2,510,548	-				-2.3
2,510,554	-				-0.2
2,510,566	+				+0.0
2,510,566	+				+1.2
2,510,567	-				-0.5
2,510,628	-				+2.0
2,510,628	-				+2.3
2,510,661	+				-1.8
2,510,664	+				+0.5
2,510,664	+				-1.7
2,510,700	+				+0.5
2,510,700	+				+0.5
2,510,700	+				-0.3
2,510,758	+				+0.3
2,510,827	+		DZA65_RS11765	0.13	+1.2
2,510,827	+		DZA65_RS11765	0.13	+0.1
2,510,827	+		DZA65_RS11765	0.13	+1.1
2,510,827	+		DZA65_RS11765	0.13	+0.1
2,510,827	+		DZA65_RS11765	0.13	-0.1
2,510,827	+		DZA65_RS11765	0.13	+0.0
2,510,828	-		DZA65_RS11765	0.13	+0.7
2,510,828	-		DZA65_RS11765	0.13	-1.3
2,510,828	-		DZA65_RS11765	0.13	+0.2
2,510,828	-		DZA65_RS11765	0.13	-1.8
2,510,828	-		DZA65_RS11765	0.13	+0.3
2,510,828	-		DZA65_RS11765	0.13	+0.7
2,510,828	-		DZA65_RS11765	0.13	-0.5
2,510,840	-		DZA65_RS11765	0.14	-0.8
2,510,858	+		DZA65_RS11765	0.15	+0.0
2,510,859	-		DZA65_RS11765	0.15	+0.1
2,510,862	+		DZA65_RS11765	0.16	-0.5
2,510,862	+		DZA65_RS11765	0.16	+0.6
2,510,863	-		DZA65_RS11765	0.16	+1.7
2,510,863	-		DZA65_RS11765	0.16	+0.8
2,510,980	-		DZA65_RS11765	0.24	+0.5
2,511,058	-		DZA65_RS11765	0.30	+0.0
2,511,088	+		DZA65_RS11765	0.32	-0.2
2,511,089	-		DZA65_RS11765	0.32	-1.1
2,511,089	-		DZA65_RS11765	0.32	+0.2
2,511,104	+		DZA65_RS11765	0.33	+1.0
2,511,104	+		DZA65_RS11765	0.33	+0.5
2,511,104	+		DZA65_RS11765	0.33	-1.8
2,511,104	+		DZA65_RS11765	0.33	-0.1
2,511,104	+		DZA65_RS11765	0.33	+1.2
2,511,104	+		DZA65_RS11765	0.33	-0.3
2,511,105	-		DZA65_RS11765	0.33	-1.4
2,511,105	-		DZA65_RS11765	0.33	+0.9
2,511,105	-		DZA65_RS11765	0.33	+0.5
2,511,105	-		DZA65_RS11765	0.33	-1.5
2,511,105	-		DZA65_RS11765	0.33	+1.0
2,511,105	-		DZA65_RS11765	0.33	+1.9
2,511,105	-		DZA65_RS11765	0.33	+1.3
2,511,105	-		DZA65_RS11765	0.33	-0.2
2,511,304	+		DZA65_RS11765	0.47	+1.7
2,511,304	+		DZA65_RS11765	0.47	-1.1
2,511,304	+		DZA65_RS11765	0.47	+1.0
2,511,304	+		DZA65_RS11765	0.47	-1.1
2,511,305	-		DZA65_RS11765	0.47	-2.3
2,511,305	-		DZA65_RS11765	0.47	-1.1
2,511,305	-		DZA65_RS11765	0.47	+1.8
2,511,305	-		DZA65_RS11765	0.47	+1.5
2,511,305	-		DZA65_RS11765	0.47	-1.5
2,511,314	+		DZA65_RS11765	0.48	-1.1
2,511,359	+		DZA65_RS11765	0.51	-0.5
2,511,360	-		DZA65_RS11765	0.51	-3.0
2,511,447	-		DZA65_RS11765	0.58	+3.1
2,511,474	+		DZA65_RS11765	0.60	-0.2
2,511,474	+		DZA65_RS11765	0.60	-0.5
2,511,475	-		DZA65_RS11765	0.60	-1.8
2,511,475	-		DZA65_RS11765	0.60	-0.1
2,511,475	-		DZA65_RS11765	0.60	-0.0
2,511,475	-		DZA65_RS11765	0.60	+1.1
2,511,475	-		DZA65_RS11765	0.60	+1.3
2,511,475	-		DZA65_RS11765	0.60	-3.2