Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS08990 and DZA65_RS08995 are separated by 2 nucleotides DZA65_RS08995 and DZA65_RS09000 are separated by 494 nucleotides
DZA65_RS08990: DZA65_RS08990 - excinuclease ABC subunit B, at 1,893,356 to 1,895,368
_RS08990
DZA65_RS08995: DZA65_RS08995 - uridine diphosphate-N-acetylglucosamine-binding protein YvcK, at 1,895,371 to 1,896,330
_RS08995
DZA65_RS09000: DZA65_RS09000 - GTP 3',8-cyclase MoaA, at 1,896,825 to 1,897,814
_RS09000
Position (kb) 1895
1896
1897 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1894.406 kb on + strand, within DZA65_RS08990 at 1894.407 kb on - strand at 1894.407 kb on - strand, within DZA65_RS08990 at 1894.407 kb on - strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.526 kb on + strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.527 kb on - strand, within DZA65_RS08990 at 1894.590 kb on + strand, within DZA65_RS08990 at 1894.590 kb on + strand, within DZA65_RS08990 at 1894.591 kb on - strand, within DZA65_RS08990 at 1894.748 kb on + strand, within DZA65_RS08990 at 1894.748 kb on + strand, within DZA65_RS08990 at 1894.773 kb on + strand, within DZA65_RS08990 at 1894.774 kb on - strand, within DZA65_RS08990 at 1894.774 kb on - strand, within DZA65_RS08990 at 1894.774 kb on - strand, within DZA65_RS08990 at 1894.779 kb on - strand, within DZA65_RS08990 at 1894.779 kb on - strand, within DZA65_RS08990 at 1895.012 kb on + strand, within DZA65_RS08990 at 1895.087 kb on + strand, within DZA65_RS08990 at 1895.087 kb on + strand, within DZA65_RS08990 at 1895.088 kb on - strand, within DZA65_RS08990 at 1895.088 kb on - strand, within DZA65_RS08990 at 1895.088 kb on - strand, within DZA65_RS08990 at 1895.088 kb on - strand, within DZA65_RS08990 at 1895.088 kb on - strand, within DZA65_RS08990 at 1895.088 kb on - strand, within DZA65_RS08990 at 1895.353 kb on + strand at 1895.354 kb on - strand at 1895.366 kb on + strand at 1895.372 kb on + strand at 1895.372 kb on + strand at 1895.372 kb on + strand at 1895.373 kb on - strand at 1895.578 kb on - strand, within DZA65_RS08995 at 1895.605 kb on - strand, within DZA65_RS08995 at 1895.642 kb on - strand, within DZA65_RS08995 at 1895.675 kb on + strand, within DZA65_RS08995 at 1895.675 kb on + strand, within DZA65_RS08995 at 1895.675 kb on + strand, within DZA65_RS08995 at 1895.675 kb on + strand, within DZA65_RS08995 at 1895.675 kb on + strand, within DZA65_RS08995 at 1895.675 kb on + strand, within DZA65_RS08995 at 1895.676 kb on - strand, within DZA65_RS08995 at 1895.676 kb on - strand, within DZA65_RS08995 at 1895.676 kb on - strand, within DZA65_RS08995 at 1895.676 kb on - strand at 1895.729 kb on - strand, within DZA65_RS08995 at 1895.886 kb on - strand, within DZA65_RS08995 at 1896.004 kb on + strand, within DZA65_RS08995 at 1896.004 kb on + strand, within DZA65_RS08995 at 1896.004 kb on + strand, within DZA65_RS08995 at 1896.004 kb on + strand, within DZA65_RS08995 at 1896.004 kb on + strand, within DZA65_RS08995 at 1896.004 kb on + strand, within DZA65_RS08995 at 1896.004 kb on + strand at 1896.004 kb on + strand, within DZA65_RS08995 at 1896.005 kb on - strand, within DZA65_RS08995 at 1896.005 kb on - strand, within DZA65_RS08995 at 1896.005 kb on - strand, within DZA65_RS08995 at 1896.005 kb on - strand, within DZA65_RS08995 at 1896.005 kb on - strand, within DZA65_RS08995 at 1896.005 kb on - strand, within DZA65_RS08995 at 1896.005 kb on - strand, within DZA65_RS08995 at 1896.005 kb on - strand, within DZA65_RS08995 at 1896.005 kb on - strand, within DZA65_RS08995 at 1896.009 kb on + strand, within DZA65_RS08995 at 1896.010 kb on - strand, within DZA65_RS08995 at 1896.139 kb on - strand, within DZA65_RS08995 at 1896.330 kb on + strand at 1896.331 kb on - strand at 1896.334 kb on + strand at 1896.334 kb on + strand at 1896.334 kb on + strand at 1896.334 kb on + strand at 1896.335 kb on - strand at 1896.335 kb on - strand at 1896.368 kb on - strand at 1896.374 kb on + strand at 1896.374 kb on + strand at 1896.374 kb on + strand at 1896.374 kb on + strand at 1896.374 kb on + strand at 1896.375 kb on - strand at 1896.375 kb on - strand at 1896.375 kb on - strand at 1896.375 kb on - strand at 1896.375 kb on - strand at 1896.376 kb on + strand at 1896.376 kb on + strand at 1896.376 kb on + strand at 1896.376 kb on + strand at 1896.376 kb on + strand at 1896.376 kb on + strand at 1896.376 kb on + strand at 1896.376 kb on + strand at 1896.377 kb on - strand at 1896.377 kb on - strand at 1896.377 kb on - strand at 1896.377 kb on - strand at 1896.377 kb on - strand at 1896.377 kb on - strand at 1896.377 kb on - strand at 1896.377 kb on - strand at 1896.377 kb on - strand at 1896.377 kb on - strand at 1896.377 kb on - strand at 1896.377 kb on - strand at 1896.378 kb on + strand at 1896.378 kb on + strand at 1896.378 kb on + strand at 1896.378 kb on + strand at 1896.378 kb on + strand at 1896.379 kb on - strand at 1896.379 kb on - strand at 1896.379 kb on - strand at 1896.379 kb on - strand at 1896.405 kb on + strand at 1896.406 kb on - strand at 1896.577 kb on - strand at 1896.630 kb on + strand at 1896.630 kb on + strand at 1896.631 kb on - strand at 1896.631 kb on - strand at 1896.631 kb on - strand at 1896.723 kb on + strand at 1896.723 kb on + strand at 1896.723 kb on + strand at 1896.723 kb on + strand at 1896.724 kb on - strand at 1896.745 kb on + strand at 1896.746 kb on - strand at 1896.746 kb on - strand at 1896.746 kb on - strand at 1896.746 kb on - strand at 1896.782 kb on + strand at 1896.783 kb on - strand at 1896.787 kb on + strand at 1896.788 kb on - strand at 1896.808 kb on + strand at 1896.825 kb on - strand at 1896.825 kb on - strand at 1896.825 kb on - strand at 1896.829 kb on + strand at 1896.830 kb on - strand at 1896.830 kb on - strand at 1896.864 kb on + strand at 1896.865 kb on - strand at 1896.867 kb on + strand at 1896.868 kb on - strand at 1896.868 kb on - strand at 1896.897 kb on - strand at 1896.908 kb on + strand at 1896.908 kb on + strand at 1896.908 kb on + strand at 1896.908 kb on + strand at 1896.909 kb on - strand at 1896.909 kb on - strand at 1896.909 kb on - strand at 1896.912 kb on + strand at 1896.912 kb on + strand at 1896.912 kb on + strand at 1896.912 kb on + strand at 1896.913 kb on - strand at 1896.913 kb on - strand at 1896.913 kb on - strand at 1896.913 kb on - strand at 1896.913 kb on - strand at 1897.071 kb on - strand, within DZA65_RS09000 at 1897.073 kb on + strand at 1897.073 kb on + strand, within DZA65_RS09000 at 1897.073 kb on + strand, within DZA65_RS09000 at 1897.073 kb on + strand, within DZA65_RS09000 at 1897.073 kb on + strand, within DZA65_RS09000 at 1897.074 kb on - strand, within DZA65_RS09000 at 1897.265 kb on + strand, within DZA65_RS09000 at 1897.310 kb on + strand, within DZA65_RS09000
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 1,894,406 + DZA65_RS08990 0.52 +2.6 1,894,407 - +0.6 1,894,407 - DZA65_RS08990 0.52 -1.4 1,894,407 - DZA65_RS08990 0.52 -1.3 1,894,526 + DZA65_RS08990 0.58 -1.7 1,894,526 + DZA65_RS08990 0.58 -0.0 1,894,526 + DZA65_RS08990 0.58 +1.5 1,894,526 + DZA65_RS08990 0.58 +1.3 1,894,526 + DZA65_RS08990 0.58 +1.6 1,894,526 + DZA65_RS08990 0.58 +0.6 1,894,526 + DZA65_RS08990 0.58 -1.0 1,894,526 + DZA65_RS08990 0.58 +0.6 1,894,526 + DZA65_RS08990 0.58 -1.0 1,894,526 + DZA65_RS08990 0.58 +0.2 1,894,526 + DZA65_RS08990 0.58 -0.9 1,894,526 + DZA65_RS08990 0.58 -0.9 1,894,526 + DZA65_RS08990 0.58 -0.4 1,894,526 + DZA65_RS08990 0.58 -0.6 1,894,526 + DZA65_RS08990 0.58 -1.7 1,894,526 + DZA65_RS08990 0.58 -0.8 1,894,526 + DZA65_RS08990 0.58 -1.8 1,894,527 - DZA65_RS08990 0.58 -1.0 1,894,527 - DZA65_RS08990 0.58 -0.0 1,894,527 - DZA65_RS08990 0.58 -1.9 1,894,527 - DZA65_RS08990 0.58 -1.2 1,894,527 - DZA65_RS08990 0.58 -1.8 1,894,527 - DZA65_RS08990 0.58 +1.3 1,894,527 - DZA65_RS08990 0.58 -2.4 1,894,527 - DZA65_RS08990 0.58 +0.1 1,894,527 - DZA65_RS08990 0.58 -1.0 1,894,527 - DZA65_RS08990 0.58 -1.8 1,894,527 - DZA65_RS08990 0.58 -0.9 1,894,527 - -1.8 1,894,527 - DZA65_RS08990 0.58 -1.2 1,894,527 - DZA65_RS08990 0.58 -2.4 1,894,527 - DZA65_RS08990 0.58 -0.0 1,894,590 + DZA65_RS08990 0.61 +0.6 1,894,590 + DZA65_RS08990 0.61 -2.0 1,894,591 - DZA65_RS08990 0.61 -0.3 1,894,748 + DZA65_RS08990 0.69 +0.2 1,894,748 + DZA65_RS08990 0.69 -0.4 1,894,773 + DZA65_RS08990 0.70 +0.3 1,894,774 - DZA65_RS08990 0.70 -0.2 1,894,774 - DZA65_RS08990 0.70 -2.0 1,894,774 - DZA65_RS08990 0.70 -1.4 1,894,779 - DZA65_RS08990 0.71 -1.0 1,894,779 - DZA65_RS08990 0.71 -1.4 1,895,012 + DZA65_RS08990 0.82 +0.1 1,895,087 + DZA65_RS08990 0.86 +0.6 1,895,087 + DZA65_RS08990 0.86 -2.4 1,895,088 - DZA65_RS08990 0.86 +0.8 1,895,088 - DZA65_RS08990 0.86 -1.0 1,895,088 - DZA65_RS08990 0.86 -0.6 1,895,088 - DZA65_RS08990 0.86 +0.6 1,895,088 - DZA65_RS08990 0.86 -3.9 1,895,088 - DZA65_RS08990 0.86 +1.4 1,895,353 + +0.6 1,895,354 - -0.4 1,895,366 + +1.8 1,895,372 + -0.4 1,895,372 + -0.4 1,895,372 + -0.1 1,895,373 - -0.4 1,895,578 - DZA65_RS08995 0.22 -0.6 1,895,605 - DZA65_RS08995 0.24 -1.8 1,895,642 - DZA65_RS08995 0.28 -0.4 1,895,675 + DZA65_RS08995 0.32 -0.4 1,895,675 + DZA65_RS08995 0.32 +0.6 1,895,675 + DZA65_RS08995 0.32 -1.0 1,895,675 + DZA65_RS08995 0.32 +0.9 1,895,675 + DZA65_RS08995 0.32 -0.6 1,895,675 + DZA65_RS08995 0.32 -1.4 1,895,676 - DZA65_RS08995 0.32 +1.7 1,895,676 - DZA65_RS08995 0.32 +0.2 1,895,676 - DZA65_RS08995 0.32 -0.2 1,895,676 - -0.4 1,895,729 - DZA65_RS08995 0.37 -0.0 1,895,886 - DZA65_RS08995 0.54 +1.1 1,896,004 + DZA65_RS08995 0.66 +1.7 1,896,004 + DZA65_RS08995 0.66 -2.3 1,896,004 + DZA65_RS08995 0.66 -0.4 1,896,004 + DZA65_RS08995 0.66 +0.3 1,896,004 + DZA65_RS08995 0.66 +0.1 1,896,004 + DZA65_RS08995 0.66 -1.0 1,896,004 + +1.3 1,896,004 + DZA65_RS08995 0.66 -0.4 1,896,005 - DZA65_RS08995 0.66 +0.6 1,896,005 - DZA65_RS08995 0.66 -0.6 1,896,005 - DZA65_RS08995 0.66 -1.0 1,896,005 - DZA65_RS08995 0.66 +0.4 1,896,005 - DZA65_RS08995 0.66 +0.5 1,896,005 - DZA65_RS08995 0.66 -0.8 1,896,005 - DZA65_RS08995 0.66 -1.3 1,896,005 - DZA65_RS08995 0.66 -1.1 1,896,005 - DZA65_RS08995 0.66 +0.7 1,896,009 + DZA65_RS08995 0.66 -2.3 1,896,010 - DZA65_RS08995 0.67 +3.6 1,896,139 - DZA65_RS08995 0.80 +0.1 1,896,330 + +1.2 1,896,331 - -1.4 1,896,334 + -1.4 1,896,334 + +0.1 1,896,334 + -1.0 1,896,334 + -3.3 1,896,335 - +0.6 1,896,335 - -0.9 1,896,368 - -0.0 1,896,374 + +0.6 1,896,374 + +0.6 1,896,374 + -1.0 1,896,374 + -0.0 1,896,374 + +1.1 1,896,375 - -0.7 1,896,375 - -0.3 1,896,375 - -1.8 1,896,375 - +1.1 1,896,375 - +1.1 1,896,376 + -0.2 1,896,376 + -0.4 1,896,376 + -0.4 1,896,376 + +0.7 1,896,376 + -0.4 1,896,376 + +1.4 1,896,376 + -0.4 1,896,376 + -1.8 1,896,377 - +0.1 1,896,377 - -0.4 1,896,377 - +0.7 1,896,377 - -1.8 1,896,377 - -3.3 1,896,377 - +0.2 1,896,377 - -2.1 1,896,377 - +0.8 1,896,377 - +0.3 1,896,377 - -0.0 1,896,377 - -1.8 1,896,377 - -1.4 1,896,378 + -0.7 1,896,378 + +1.2 1,896,378 + +1.4 1,896,378 + -0.4 1,896,378 + -1.8 1,896,379 - -0.4 1,896,379 - -2.1 1,896,379 - -0.4 1,896,379 - +1.4 1,896,405 + -1.8 1,896,406 - +2.0 1,896,577 - +0.3 1,896,630 + -1.4 1,896,630 + +0.0 1,896,631 - -0.7 1,896,631 - -0.4 1,896,631 - -1.0 1,896,723 + -2.6 1,896,723 + +0.7 1,896,723 + +1.6 1,896,723 + +0.7 1,896,724 - +0.4 1,896,745 + +0.8 1,896,746 - +0.6 1,896,746 - -2.4 1,896,746 - -0.3 1,896,746 - -0.4 1,896,782 + -0.7 1,896,783 - -1.8 1,896,787 + -1.0 1,896,788 - -1.4 1,896,808 + -0.7 1,896,825 - -2.3 1,896,825 - -1.7 1,896,825 - +0.2 1,896,829 + +0.2 1,896,830 - -1.4 1,896,830 - -1.1 1,896,864 + +0.4 1,896,865 - -1.3 1,896,867 + -0.3 1,896,868 - -0.3 1,896,868 - -2.4 1,896,897 - +0.4 1,896,908 + -1.3 1,896,908 + -0.6 1,896,908 + -1.0 1,896,908 + -0.0 1,896,909 - -1.4 1,896,909 - -2.0 1,896,909 - +0.6 1,896,912 + -0.4 1,896,912 + +1.1 1,896,912 + +1.6 1,896,912 + -0.4 1,896,913 - -0.1 1,896,913 - -2.3 1,896,913 - -1.0 1,896,913 - -2.0 1,896,913 - +0.2 1,897,071 - DZA65_RS09000 0.25 +0.6 1,897,073 + -2.9 1,897,073 + DZA65_RS09000 0.25 -1.6 1,897,073 + DZA65_RS09000 0.25 +0.1 1,897,073 + DZA65_RS09000 0.25 -1.2 1,897,073 + DZA65_RS09000 0.25 -2.3 1,897,074 - DZA65_RS09000 0.25 -0.0 1,897,265 + DZA65_RS09000 0.44 -0.7 1,897,310 + DZA65_RS09000 0.49 -2.0
Or see this region's nucleotide sequence