Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06975

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,443,597	+		DZA65_RS06970	0.56	-0.7
1,443,597	+		DZA65_RS06970	0.56	+0.3
1,443,597	+		DZA65_RS06970	0.56	-0.9
1,443,597	+		DZA65_RS06970	0.56	+0.7
1,443,598	-		DZA65_RS06970	0.56	+0.6
1,443,598	-		DZA65_RS06970	0.56	-0.9
1,443,598	-		DZA65_RS06970	0.56	-1.2
1,443,598	-		DZA65_RS06970	0.56	+0.7
1,443,598	-		DZA65_RS06970	0.56	+0.4
1,443,598	-		DZA65_RS06970	0.56	-2.1
1,443,749	+		DZA65_RS06970	0.69	-1.3
1,443,749	+		DZA65_RS06970	0.69	+0.7
1,443,749	+		DZA65_RS06970	0.69	-2.6
1,443,750	-		DZA65_RS06970	0.69	+0.4
1,444,044	+				+1.7
1,444,045	-				+0.7
1,444,045	-				-0.0
1,444,047	+				+3.1
1,444,047	+				+0.4
1,444,048	-				-1.4
1,444,048	-				+0.3
1,444,048	-				+0.7
1,444,048	-				-1.3
1,444,048	-				-3.4
1,444,048	-				+0.7
1,444,049	+				+1.9
1,444,049	+				+1.0
1,444,049	+				+0.6
1,444,049	+				+1.1
1,444,049	+				+0.1
1,444,049	+				-1.6
1,444,049	+				+0.4
1,444,049	+				+1.2
1,444,050	-				-0.3
1,444,050	-				-0.3
1,444,050	-				+0.4
1,444,050	-				+0.9
1,444,050	-				-0.3
1,444,050	-				-1.3
1,444,050	-				-1.3
1,444,050	-				+0.7
1,444,050	-				-0.7
1,444,050	-				-1.0
1,444,050	-				+1.0
1,444,050	-				+0.9
1,444,050	-				-0.5
1,444,050	-				+0.4
1,444,050	-				-1.9
1,444,050	-				+0.7
1,444,258	+		DZA65_RS22825	0.59	-0.3
1,444,258	+		DZA65_RS22825	0.59	+3.0
1,444,259	-		DZA65_RS22825	0.59	+0.0
1,444,259	-		DZA65_RS22825	0.59	-1.3
1,444,259	-		DZA65_RS22825	0.59	-2.1
1,444,292	-		DZA65_RS22825	0.70	-0.3
1,444,292	-		DZA65_RS22825	0.70	-0.4
1,444,292	-		DZA65_RS22825	0.70	-0.0
1,444,331	+		DZA65_RS22825	0.84	-0.9
1,444,332	-		DZA65_RS22825	0.84	+0.4
1,444,332	-		DZA65_RS22825	0.84	+0.7
1,444,336	+		DZA65_RS22825	0.85	+0.7
1,444,336	+		DZA65_RS22825	0.85	-2.1
1,444,336	+		DZA65_RS22825	0.85	+0.3
1,444,336	+		DZA65_RS22825	0.85	+1.3
1,444,336	+		DZA65_RS22825	0.85	+0.7
1,444,337	-		DZA65_RS22825	0.86	-1.3
1,444,337	-		DZA65_RS22825	0.86	-0.9
1,444,337	-		DZA65_RS22825	0.86	+0.7
1,444,370	+				-1.9
1,444,370	+				-0.9
1,444,370	+				+1.7
1,444,371	-				+0.1
1,444,371	-				-1.4
1,444,407	+				-0.5
1,444,408	-				-1.4
1,444,512	+				-0.3
1,444,547	-				-1.3
1,444,547	-				-0.6
1,444,547	-				+1.0
1,444,584	+				+0.2
1,444,585	-				-1.4
1,444,593	-				-1.6
1,444,627	+				-0.0
1,444,706	+		DZA65_RS06975	0.14	-2.4
1,444,707	-		DZA65_RS06975	0.14	-0.1
1,444,716	-		DZA65_RS06975	0.15	+1.6
1,444,763	+		DZA65_RS06975	0.19	-0.9
1,444,764	-		DZA65_RS06975	0.20	+0.7
1,444,790	+		DZA65_RS06975	0.22	+0.3
1,444,791	-		DZA65_RS06975	0.22	+0.1
1,445,021	+		DZA65_RS06975	0.43	-3.1
1,445,021	+		DZA65_RS06975	0.43	+0.4
1,445,022	-		DZA65_RS06975	0.43	+0.5
1,445,022	-		DZA65_RS06975	0.43	-1.9
1,445,022	-		DZA65_RS06975	0.43	+0.5
1,445,022	-		DZA65_RS06975	0.43	-0.3
1,445,024	+		DZA65_RS06975	0.44	-0.2
1,445,087	+		DZA65_RS06975	0.49	-0.3
1,445,087	+		DZA65_RS06975	0.49	+0.7
1,445,087	+		DZA65_RS06975	0.49	+0.7
1,445,087	+		DZA65_RS06975	0.49	+3.7
1,445,087	+		DZA65_RS06975	0.49	+0.7
1,445,087	+		DZA65_RS06975	0.49	-1.4
1,445,088	-		DZA65_RS06975	0.49	+0.4
1,445,088	-		DZA65_RS06975	0.49	+2.5
1,445,088	-		DZA65_RS06975	0.49	-0.4
1,445,088	-		DZA65_RS06975	0.49	+0.7
1,445,174	+		DZA65_RS06975	0.57	+1.7
1,445,175	-		DZA65_RS06975	0.58	+0.9
1,445,175	-		DZA65_RS06975	0.58	-1.0
1,445,237	+		DZA65_RS06975	0.63	-0.3
1,445,237	+		DZA65_RS06975	0.63	-2.6
1,445,237	+		DZA65_RS06975	0.63	+0.7
1,445,238	-		DZA65_RS06975	0.63	-1.9
1,445,238	-		DZA65_RS06975	0.63	-0.7
1,445,243	-		DZA65_RS06975	0.64	+1.5
1,445,308	+		DZA65_RS06975	0.70	-2.3
1,445,308	+		DZA65_RS06975	0.70	-1.6
1,445,308	+		DZA65_RS06975	0.70	-1.9
1,445,308	+		DZA65_RS06975	0.70	-0.3
1,445,309	-		DZA65_RS06975	0.70	+0.8
1,445,309	-				+0.3
1,445,309	-		DZA65_RS06975	0.70	-2.3
1,445,309	-				+1.7
1,445,309	-		DZA65_RS06975	0.70	+0.4
1,445,391	-		DZA65_RS06975	0.77	+3.8
1,445,414	+		DZA65_RS06975	0.80	-0.3
1,445,538	+				-0.3
1,445,557	+				+1.2
1,445,634	+				-2.6
1,445,635	-				-0.3
1,445,635	-				-1.6
1,445,635	-				+1.6
1,445,664	+				-1.7
1,445,664	+				+0.9
1,445,665	-				+1.3
1,445,665	-				-1.1
1,445,665	-				-2.4
1,445,758	+		DZA65_RS06980	0.12	-0.6
1,445,758	+		DZA65_RS06980	0.12	-0.3
1,445,759	-		DZA65_RS06980	0.12	-2.2
1,445,759	-		DZA65_RS06980	0.12	-1.9
1,445,759	-		DZA65_RS06980	0.12	+0.2
1,445,974	+		DZA65_RS06980	0.30	-1.4
1,445,975	-		DZA65_RS06980	0.30	+0.7
1,445,975	-				-1.4
1,446,104	-		DZA65_RS06980	0.42	+0.5
1,446,108	+		DZA65_RS06980	0.42	-3.1
1,446,108	+		DZA65_RS06980	0.42	-0.4
1,446,108	+		DZA65_RS06980	0.42	+0.4
1,446,108	+		DZA65_RS06980	0.42	-2.1
1,446,108	+		DZA65_RS06980	0.42	-2.7
1,446,108	+		DZA65_RS06980	0.42	-0.1
1,446,109	-		DZA65_RS06980	0.42	+0.7
1,446,109	-		DZA65_RS06980	0.42	+0.4
1,446,109	-		DZA65_RS06980	0.42	+0.2
1,446,109	-		DZA65_RS06980	0.42	-1.9
1,446,109	-		DZA65_RS06980	0.42	+0.7
1,446,109	-		DZA65_RS06980	0.42	+0.7
1,446,109	-		DZA65_RS06980	0.42	+1.3
1,446,109	-		DZA65_RS06980	0.42	-1.3
1,446,109	-		DZA65_RS06980	0.42	-0.3
1,446,109	-		DZA65_RS06980	0.42	+1.0
1,446,109	-		DZA65_RS06980	0.42	-0.3
1,446,119	+		DZA65_RS06980	0.43	-1.7
1,446,119	+		DZA65_RS06980	0.43	+0.3
1,446,271	+		DZA65_RS06980	0.56	-1.9
1,446,271	+		DZA65_RS06980	0.56	+0.7
1,446,272	-		DZA65_RS06980	0.56	+1.9
1,446,342	+		DZA65_RS06980	0.62	-0.0
1,446,488	+		DZA65_RS06980	0.75	+0.5
1,446,488	+		DZA65_RS06980	0.75	-1.7
1,446,489	-		DZA65_RS06980	0.75	-0.6
1,446,489	-		DZA65_RS06980	0.75	-1.7
1,446,492	+		DZA65_RS06980	0.75	-0.6
1,446,492	+		DZA65_RS06980	0.75	+0.5
1,446,492	+		DZA65_RS06980	0.75	+0.2
1,446,493	-		DZA65_RS06980	0.75	+0.2
1,446,493	-		DZA65_RS06980	0.75	+1.7
1,446,493	-		DZA65_RS06980	0.75	-0.7
1,446,493	-		DZA65_RS06980	0.75	-1.6
1,446,493	-		DZA65_RS06980	0.75	-0.3
1,446,493	-		DZA65_RS06980	0.75	-1.8
1,446,493	-		DZA65_RS06980	0.75	-2.7
1,446,565	-		DZA65_RS06980	0.82	-2.1
1,446,565	-		DZA65_RS06980	0.82	+0.4
1,446,628	-		DZA65_RS06980	0.87	+2.3
1,446,628	-		DZA65_RS06980	0.87	-3.4
1,446,628	-		DZA65_RS06980	0.87	-1.6
1,446,628	-		DZA65_RS06980	0.87	-0.9
1,446,628	-		DZA65_RS06980	0.87	+0.7
1,446,628	-		DZA65_RS06980	0.87	+0.3
1,446,628	-		DZA65_RS06980	0.87	+1.3
1,446,628	-		DZA65_RS06980	0.87	-0.3
1,446,628	-		DZA65_RS06980	0.87	-1.3