Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06320

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,316,302	+		DZA65_RS06315	0.48	+0.4
1,316,303	-		DZA65_RS06315	0.48	-1.6
1,316,544	+		DZA65_RS06315	0.65	+1.7
1,316,544	+		DZA65_RS06315	0.65	+1.3
1,316,626	+		DZA65_RS06315	0.71	+0.3
1,316,786	+		DZA65_RS06315	0.83	-0.7
1,316,786	+		DZA65_RS06315	0.83	-0.1
1,316,786	+		DZA65_RS06315	0.83	-2.0
1,316,786	+		DZA65_RS06315	0.83	-0.7
1,316,786	+		DZA65_RS06315	0.83	-1.1
1,316,786	+		DZA65_RS06315	0.83	+0.4
1,316,786	+		DZA65_RS06315	0.83	-0.1
1,316,786	+		DZA65_RS06315	0.83	-0.1
1,316,786	+		DZA65_RS06315	0.83	+0.3
1,316,786	+		DZA65_RS06315	0.83	-0.7
1,316,787	-		DZA65_RS06315	0.83	+0.5
1,316,787	-		DZA65_RS06315	0.83	+0.1
1,316,787	-		DZA65_RS06315	0.83	-0.5
1,316,787	-		DZA65_RS06315	0.83	-1.1
1,316,787	-		DZA65_RS06315	0.83	-1.1
1,316,787	-		DZA65_RS06315	0.83	-0.1
1,316,930	+				-1.5
1,316,931	-				+0.3
1,317,088	+				+0.1
1,317,088	+				+0.9
1,317,088	+				+0.3
1,317,088	+				-0.7
1,317,088	+				-0.8
1,317,089	-				-1.1
1,317,089	-				+0.9
1,317,089	-				+0.6
1,317,089	-				+0.6
1,317,089	-				-1.1
1,317,089	-				-2.1
1,317,089	-				-1.1
1,317,127	+				-3.1
1,317,127	+				+0.3
1,317,127	+				+0.3
1,317,128	-				+2.1
1,317,128	-				-2.2
1,317,131	+				+0.0
1,317,131	+				-0.6
1,317,131	+				-2.0
1,317,132	-				-0.1
1,317,132	-				-0.2
1,317,132	-				+1.9
1,317,158	+				+0.9
1,317,158	+				-0.7
1,317,171	-				-0.2
1,317,199	+				+3.3
1,317,199	+				+0.6
1,317,200	-				-0.1
1,317,200	-				-1.7
1,317,200	-				+0.5
1,317,216	+				+1.4
1,317,216	+				+0.4
1,317,217	-				-2.1
1,317,217	-				+0.9
1,317,218	+				-1.5
1,317,218	+				-2.6
1,317,218	+				-0.1
1,317,218	+				-0.5
1,317,218	+				-2.1
1,317,219	-				+1.4
1,317,219	-				-0.7
1,317,219	-				+1.4
1,317,219	-				+1.5
1,317,238	-				-0.5
1,317,291	+		DZA65_RS06320	0.12	-1.1
1,317,291	+		DZA65_RS06320	0.12	+0.2
1,317,292	-		DZA65_RS06320	0.13	-0.7
1,317,316	+		DZA65_RS06320	0.17	+0.2
1,317,369	+		DZA65_RS06320	0.27	-0.1
1,317,409	+		DZA65_RS06320	0.34	+0.6
1,317,410	-		DZA65_RS06320	0.34	-2.6
1,317,410	-		DZA65_RS06320	0.34	-0.7
1,317,410	-		DZA65_RS06320	0.34	-0.4
1,317,427	+		DZA65_RS06320	0.37	-1.7
1,317,427	+		DZA65_RS06320	0.37	-3.0
1,317,428	-		DZA65_RS06320	0.38	+4.3
1,317,428	-		DZA65_RS06320	0.38	-0.6
1,317,478	+		DZA65_RS06320	0.47	+0.5
1,317,479	-		DZA65_RS06320	0.47	-0.4
1,317,498	+		DZA65_RS06320	0.50	-2.0
1,317,498	+		DZA65_RS06320	0.50	+0.1
1,317,498	+		DZA65_RS06320	0.50	+0.9
1,317,499	-		DZA65_RS06320	0.51	-1.1
1,317,509	-		DZA65_RS06320	0.52	+0.1
1,317,509	-		DZA65_RS06320	0.52	+0.5
1,317,566	-		DZA65_RS06320	0.63	+1.1
1,317,577	+		DZA65_RS06320	0.65	+0.3
1,317,577	+		DZA65_RS06320	0.65	-0.7
1,317,577	+		DZA65_RS06320	0.65	-0.9
1,317,578	-		DZA65_RS06320	0.65	-0.7
1,317,578	-		DZA65_RS06320	0.65	-0.2
1,317,578	-		DZA65_RS06320	0.65	-0.0
1,317,578	-		DZA65_RS06320	0.65	-0.1
1,317,578	-		DZA65_RS06320	0.65	-0.6
1,317,580	+		DZA65_RS06320	0.65	-0.1
1,317,581	-		DZA65_RS06320	0.66	+0.6
1,317,616	+		DZA65_RS06320	0.72	-0.3
1,317,617	-		DZA65_RS06320	0.72	-1.5
1,317,617	-		DZA65_RS06320	0.72	+0.6
1,317,617	-		DZA65_RS06320	0.72	-0.3
1,317,617	-		DZA65_RS06320	0.72	-0.8
1,317,617	-		DZA65_RS06320	0.72	-0.5
1,317,685	+		DZA65_RS06320	0.85	+1.0
1,317,685	+		DZA65_RS06320	0.85	-0.1
1,317,685	+		DZA65_RS06320	0.85	-1.8
1,317,685	+		DZA65_RS06320	0.85	+0.7
1,317,685	+		DZA65_RS06320	0.85	-0.4
1,317,685	+		DZA65_RS06320	0.85	+1.4
1,317,685	+		DZA65_RS06320	0.85	-1.5
1,317,685	+		DZA65_RS06320	0.85	-0.4
1,317,686	-		DZA65_RS06320	0.85	+0.6
1,317,686	-		DZA65_RS06320	0.85	+0.9
1,317,686	-		DZA65_RS06320	0.85	+2.1
1,317,686	-		DZA65_RS06320	0.85	+1.9
1,317,687	+		DZA65_RS06320	0.85	+0.5
1,317,687	+		DZA65_RS06320	0.85	-0.1
1,317,687	+		DZA65_RS06320	0.85	+1.2
1,317,688	-		DZA65_RS06320	0.85	-1.7
1,317,688	-		DZA65_RS06320	0.85	+2.1
1,317,688	-		DZA65_RS06320	0.85	+0.5
1,317,742	+				+1.9
1,317,742	+				+0.7
1,317,742	+				+0.9
1,317,742	+				-1.5
1,317,743	-				-0.9
1,317,743	-				-0.1
1,317,743	-				+0.4
1,317,743	-				-0.1
1,317,743	-				+0.9
1,317,743	-				-1.1
1,317,891	+				-0.5
1,317,923	-				-0.5
1,317,939	+				-1.5
1,317,940	-				+0.3
1,317,976	+				-0.1
1,317,976	+				+0.9
1,317,976	+				+0.9
1,317,976	+				-1.1
1,317,977	-				+0.9
1,317,977	-				+0.1
1,317,996	+				+0.5
1,317,997	-				-0.5
1,317,997	-				-0.7
1,317,997	-				-0.9
1,317,997	-				-2.0
1,318,010	+				-0.1
1,318,010	+				-2.1
1,318,010	+				-0.7
1,318,010	+				-1.7
1,318,010	+				+0.4
1,318,010	+				-1.1
1,318,010	+				-1.0
1,318,010	+				+2.4
1,318,010	+				-0.1
1,318,010	+				-0.7
1,318,010	+				-1.1
1,318,010	+				-0.3
1,318,010	+				+0.1
1,318,010	+				+0.0
1,318,010	+				+1.0
1,318,010	+				-0.1
1,318,010	+				+1.4
1,318,010	+				+1.4
1,318,010	+				-0.1
1,318,010	+				+1.4
1,318,010	+				-0.6
1,318,010	+				+1.3
1,318,010	+				-0.7
1,318,010	+				-0.1
1,318,010	+				-2.1
1,318,010	+				+1.7
1,318,011	-				+2.2
1,318,011	-				-0.6
1,318,011	-				-0.1
1,318,011	-				+0.1
1,318,011	-				+0.2
1,318,011	-				-0.8
1,318,011	-				+0.3
1,318,011	-				+3.3
1,318,011	-				-0.4
1,318,011	-				+0.5
1,318,011	-				+1.3
1,318,011	-				+1.1
1,318,014	+				-2.5
1,318,028	+				-0.5
1,318,028	+				+0.9
1,318,028	+				+1.4
1,318,029	-				+0.0
1,318,029	-				+2.2
1,318,075	+				-0.6
1,318,076	-				+0.4
1,318,076	-				-1.1
1,318,110	+				+0.9
1,318,125	+		DZA65_RS06325	0.11	+0.5
1,318,487	+		DZA65_RS06325	0.42	-0.1
1,318,497	-		DZA65_RS06325	0.42	+2.6