Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06255

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS06250 and DZA65_RS06255 are separated by 176 nucleotidesDZA65_RS06255 and DZA65_RS06260 are separated by 536 nucleotides DZA65_RS06250: DZA65_RS06250 - ribonucleotide-diphosphate reductase subunit beta, at 1,294,337 to 1,295,467 _RS06250 DZA65_RS06255: DZA65_RS06255 - ribonucleoside-diphosphate reductase subunit alpha, at 1,295,644 to 1,297,932 _RS06255 DZA65_RS06260: DZA65_RS06260 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 1,298,469 to 1,299,188 _RS06260 Position (kb) 1295 1296 1297 1298Strain fitness (log2 ratio) -2 -1 0 1 2at 1295.601 kb on - strandat 1295.646 kb on - strandat 1295.646 kb on - strandat 1295.646 kb on - strandat 1295.646 kb on - strandat 1295.646 kb on - strandat 1295.646 kb on - strandat 1295.646 kb on - strandat 1298.048 kb on - strandat 1298.050 kb on - strandat 1298.050 kb on - strandat 1298.139 kb on - strandat 1298.145 kb on + strandat 1298.145 kb on + strandat 1298.146 kb on - strandat 1298.163 kb on + strandat 1298.262 kb on - strandat 1298.262 kb on - strandat 1298.337 kb on + strandat 1298.337 kb on + strandat 1298.338 kb on - strandat 1298.350 kb on - strandat 1298.364 kb on - strandat 1298.364 kb on - strandat 1298.394 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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1,295,601 - -0.1
1,295,646 - -2.5
1,295,646 - -0.0
1,295,646 - +2.4
1,295,646 - -1.5
1,295,646 - +0.3
1,295,646 - -0.7
1,295,646 - +0.2
1,298,048 - -0.7
1,298,050 - -0.7
1,298,050 - +0.7
1,298,139 - +0.4
1,298,145 + -1.3
1,298,145 + -0.5
1,298,146 - +0.7
1,298,163 + +0.1
1,298,262 - -0.7
1,298,262 - -0.6
1,298,337 + +0.1
1,298,337 + -1.1
1,298,338 - +0.9
1,298,350 - +0.9
1,298,364 - -1.4
1,298,364 - -0.1
1,298,394 + -0.9

Or see this region's nucleotide sequence