Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05340

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,098,980	+		DZA65_RS05335	0.79	+0.8
1,098,980	+		DZA65_RS05335	0.79	+2.0
1,098,980	+		DZA65_RS05335	0.79	+0.6
1,098,980	+		DZA65_RS05335	0.79	-0.2
1,098,980	+		DZA65_RS05335	0.79	-2.9
1,098,980	+		DZA65_RS05335	0.79	+1.8
1,098,980	+		DZA65_RS05335	0.79	-1.8
1,098,980	+		DZA65_RS05335	0.79	+0.8
1,098,981	-		DZA65_RS05335	0.79	-1.3
1,098,981	-		DZA65_RS05335	0.79	+0.0
1,098,981	-		DZA65_RS05335	0.79	-1.8
1,098,981	-		DZA65_RS05335	0.79	-1.4
1,098,981	-		DZA65_RS05335	0.79	+0.4
1,098,981	-		DZA65_RS05335	0.79	-2.6
1,098,981	-		DZA65_RS05335	0.79	+3.1
1,098,981	-		DZA65_RS05335	0.79	-1.8
1,098,982	+		DZA65_RS05335	0.79	-0.5
1,098,983	-		DZA65_RS05335	0.79	+1.9
1,098,983	-		DZA65_RS05335	0.79	-0.6
1,098,995	+		DZA65_RS05335	0.79	-0.8
1,099,019	+		DZA65_RS05335	0.80	-0.6
1,099,019	+		DZA65_RS05335	0.80	-0.8
1,099,024	+		DZA65_RS05335	0.80	-0.6
1,099,024	+		DZA65_RS05335	0.80	+0.1
1,099,024	+		DZA65_RS05335	0.80	+1.1
1,099,025	-		DZA65_RS05335	0.80	+1.2
1,099,041	+		DZA65_RS05335	0.81	-1.2
1,099,041	+		DZA65_RS05335	0.81	-1.0
1,099,041	+		DZA65_RS05335	0.81	+0.1
1,099,041	+		DZA65_RS05335	0.81	+1.7
1,099,041	+		DZA65_RS05335	0.81	+2.5
1,099,041	+		DZA65_RS05335	0.81	+1.4
1,099,042	-		DZA65_RS05335	0.81	-1.2
1,099,042	-		DZA65_RS05335	0.81	+0.3
1,099,042	-		DZA65_RS05335	0.81	-1.5
1,099,042	-		DZA65_RS05335	0.81	-0.6
1,099,073	-		DZA65_RS05335	0.82	-1.4
1,099,175	+		DZA65_RS05335	0.85	-1.5
1,099,175	+		DZA65_RS05335	0.85	-1.5
1,099,176	-		DZA65_RS05335	0.85	-0.8
1,099,181	+		DZA65_RS05335	0.86	-1.0
1,099,182	-		DZA65_RS05335	0.86	-1.3
1,099,190	+		DZA65_RS05335	0.86	+0.9
1,099,191	-		DZA65_RS05335	0.86	-2.5
1,099,258	+		DZA65_RS05335	0.88	-0.5
1,099,258	+		DZA65_RS05335	0.88	+0.5
1,099,258	+		DZA65_RS05335	0.88	+1.1
1,099,258	+		DZA65_RS05335	0.88	+0.0
1,099,258	+		DZA65_RS05335	0.88	+0.3
1,099,258	+		DZA65_RS05335	0.88	+0.5
1,099,259	-		DZA65_RS05335	0.88	-2.2
1,099,259	-		DZA65_RS05335	0.88	-0.8
1,099,259	-		DZA65_RS05335	0.88	-1.0
1,099,259	-		DZA65_RS05335	0.88	-1.5
1,099,394	-				-2.9
1,099,497	-				+1.9
1,099,523	+				-1.2
1,099,523	+				+0.3
1,099,523	+				-0.9
1,099,523	+				+0.8
1,099,523	+				+0.6
1,099,523	+				-0.8
1,099,524	-				+2.0
1,099,561	-				+0.5
1,099,595	+				-0.2
1,099,595	+				+1.8
1,099,596	-				-1.8
1,099,596	-				-0.3
1,099,596	-				-0.2
1,099,596	-				+1.2
1,099,596	-				+0.5
1,099,669	+				-0.2
1,099,670	-				+1.8
1,099,670	-				+1.8
1,099,670	-				-0.8
1,099,670	-				-2.4
1,099,687	+				-0.9
1,099,688	-				+0.8
1,099,688	-				+1.4
1,099,712	+				-2.0
1,099,713	-				+1.8
1,099,720	+				-1.8
1,099,720	+				+1.0
1,099,721	-				-2.5
1,099,734	+				-0.8
1,099,734	+				+0.6
1,099,734	+				-0.8
1,099,744	+				-1.6
1,099,748	+				-0.8
1,099,748	+				-2.0
1,099,748	+				+1.2
1,099,749	-				-0.6
1,099,749	-				-0.2
1,099,749	-				+1.1
1,099,749	-				+0.7
1,099,749	-				+2.4
1,099,749	-				+1.2
1,099,749	-				-0.6
1,099,759	-				+0.0
1,099,772	+				-2.0
1,099,776	+				-1.0
1,099,776	+				+1.7
1,099,776	+				+0.8
1,099,776	+				-2.1
1,099,776	+				+0.1
1,099,776	+				+1.1
1,099,776	+				+2.2
1,099,776	+				+1.3
1,099,777	-				-0.8
1,099,777	-				-0.2
1,099,777	-				+0.3
1,099,777	-				+0.8
1,099,777	-				-0.2
1,099,812	+				+0.4
1,099,812	+				+0.4
1,099,812	+				-1.6
1,099,813	-				-0.8
1,099,813	-				+0.4
1,099,813	-				+0.6
1,099,818	+				-1.1
1,099,818	+				-0.2
1,099,818	+				-0.3
1,099,818	+				-2.1
1,099,818	+				+1.5
1,099,818	+				+2.8
1,099,819	-				-1.2
1,099,819	-				-0.8
1,099,819	-				-2.4
1,099,819	-				-1.2
1,099,819	-				-3.0
1,099,951	+		DZA65_RS05340	0.13	+0.8
1,099,951	+		DZA65_RS05340	0.13	-0.8
1,099,951	+		DZA65_RS05340	0.13	+0.1
1,099,990	-		DZA65_RS05340	0.16	-0.4
1,100,066	-		DZA65_RS05340	0.22	-1.0
1,100,231	+		DZA65_RS05340	0.34	-1.2
1,100,231	+		DZA65_RS05340	0.34	-0.4
1,100,231	+		DZA65_RS05340	0.34	-0.2
1,100,231	+		DZA65_RS05340	0.34	+1.1
1,100,231	+		DZA65_RS05340	0.34	+0.5
1,100,232	-		DZA65_RS05340	0.34	+1.1
1,100,234	+		DZA65_RS05340	0.34	+0.1
1,100,234	+		DZA65_RS05340	0.34	-0.2
1,100,234	+		DZA65_RS05340	0.34	-0.3
1,100,235	-		DZA65_RS05340	0.34	+0.4
1,100,235	-		DZA65_RS05340	0.34	-1.8
1,100,235	-		DZA65_RS05340	0.34	+1.8
1,100,235	-		DZA65_RS05340	0.34	-1.6
1,100,235	-				-0.6
1,100,235	-		DZA65_RS05340	0.34	-1.6
1,100,295	+		DZA65_RS05340	0.39	-0.6
1,100,295	+		DZA65_RS05340	0.39	+0.0
1,100,296	-		DZA65_RS05340	0.39	-0.8
1,100,296	-		DZA65_RS05340	0.39	+0.5
1,100,319	-		DZA65_RS05340	0.40	-1.8
1,100,374	+		DZA65_RS05340	0.45	-0.4
1,100,374	+		DZA65_RS05340	0.45	-0.2
1,100,374	+		DZA65_RS05340	0.45	-0.4
1,100,375	-		DZA65_RS05340	0.45	-1.5
1,100,375	-		DZA65_RS05340	0.45	-0.3
1,100,375	-		DZA65_RS05340	0.45	-0.0
1,100,375	-		DZA65_RS05340	0.45	-0.8
1,100,375	-		DZA65_RS05340	0.45	-1.8
1,100,375	-		DZA65_RS05340	0.45	-1.2
1,100,376	+		DZA65_RS05340	0.45	+0.5
1,100,376	+		DZA65_RS05340	0.45	-0.6
1,100,376	+		DZA65_RS05340	0.45	-0.0
1,100,376	+		DZA65_RS05340	0.45	-0.3
1,100,376	+		DZA65_RS05340	0.45	-0.6
1,100,376	+		DZA65_RS05340	0.45	-1.1
1,100,377	-		DZA65_RS05340	0.45	-0.8
1,100,377	-		DZA65_RS05340	0.45	+0.0
1,100,377	-		DZA65_RS05340	0.45	-1.5
1,100,439	-		DZA65_RS05340	0.49	+0.8
1,100,443	+		DZA65_RS05340	0.50	-1.0
1,100,443	+		DZA65_RS05340	0.50	+0.5
1,100,444	-		DZA65_RS05340	0.50	+0.8
1,100,444	-		DZA65_RS05340	0.50	+1.5
1,100,444	-		DZA65_RS05340	0.50	+0.6
1,100,444	-		DZA65_RS05340	0.50	+0.2
1,100,444	-		DZA65_RS05340	0.50	-1.4
1,100,665	-		DZA65_RS05340	0.66	-1.4
1,100,665	-		DZA65_RS05340	0.66	-0.8
1,100,704	+		DZA65_RS05340	0.69	-1.3
1,100,704	+		DZA65_RS05340	0.69	+0.4
1,100,705	-		DZA65_RS05340	0.69	-1.0
1,100,725	+				+0.2
1,100,782	+		DZA65_RS05340	0.75	+1.1
1,100,859	+		DZA65_RS05340	0.81	-0.4
1,100,871	+		DZA65_RS05340	0.82	-1.2
1,100,948	+		DZA65_RS05340	0.87	+0.2
1,100,948	+		DZA65_RS05340	0.87	-0.8
1,101,029	-				-0.4
1,101,029	-				-0.8
1,101,029	-				-1.9
1,101,048	+				-1.2
1,101,048	+				+0.3
1,101,048	+				-1.1
1,101,048	+				-2.2
1,101,048	+				+0.8
1,101,048	+				-0.6
1,101,048	+				-0.5
1,101,048	+				+0.3
1,101,048	+				-0.8
1,101,049	-				-0.4
1,101,049	-				-1.8
1,101,049	-				-0.3
1,101,049	-				-1.6
1,101,049	-				+0.9
1,101,049	-				+0.8
1,101,049	-				-1.2
1,101,049	-				+0.8
1,101,049	-				+0.2
1,101,049	-				-2.0
1,101,049	-				+0.0
1,101,085	+				-0.7
1,101,086	-				-1.0
1,101,086	-				+0.1
1,101,086	-				+0.1
1,101,088	+				-2.2
1,101,088	+				+0.1
1,101,088	+				+0.8
1,101,088	+				-0.1
1,101,089	-				-1.4
1,101,089	-				+0.8
1,101,089	-				-2.1
1,101,089	-				-0.1
1,101,137	+				-0.0
1,101,192	+				+0.8
1,101,192	+				+0.8
1,101,193	-				+0.8
1,101,198	-				-2.0
1,101,211	+				+1.2
1,101,211	+				+1.8
1,101,228	+				+0.2
1,101,229	-				+0.7
1,101,260	+				+0.0
1,101,261	-				-0.6
1,101,261	-				+0.1
1,101,362	+				+1.8
1,101,362	+				-2.9
1,101,363	-				+0.8
1,101,365	+				+2.0
1,101,365	+				-2.4
1,101,366	-				+0.6
1,101,396	+				+1.1
1,101,396	+				-1.4
1,101,414	-				-0.8
1,101,463	+		DZA65_RS05345	0.11	-1.5
1,101,464	-		DZA65_RS05345	0.11	+1.3
1,101,466	-		DZA65_RS05345	0.11	-1.9
1,101,502	+		DZA65_RS05345	0.14	+0.5
1,101,503	-		DZA65_RS05345	0.14	+0.8
1,101,651	+		DZA65_RS05345	0.26	-0.8
1,101,651	+		DZA65_RS05345	0.26	+0.2
1,101,651	+		DZA65_RS05345	0.26	-0.5
1,101,652	-		DZA65_RS05345	0.26	-0.5
1,101,674	+		DZA65_RS05345	0.28	-1.2
1,101,675	-		DZA65_RS05345	0.28	-1.8
1,101,675	-		DZA65_RS05345	0.28	-0.2
1,101,702	+		DZA65_RS05345	0.30	-2.7
1,101,702	+		DZA65_RS05345	0.30	-1.0
1,101,703	-		DZA65_RS05345	0.31	+0.2
1,101,703	-		DZA65_RS05345	0.31	-1.2
1,101,703	-		DZA65_RS05345	0.31	-0.2
1,101,811	+		DZA65_RS05345	0.39	-0.4
1,101,811	+		DZA65_RS05345	0.39	-1.9
1,101,812	-		DZA65_RS05345	0.39	-0.5
1,101,812	-		DZA65_RS05345	0.39	-0.2
1,101,812	-		DZA65_RS05345	0.39	+1.0
1,101,812	-		DZA65_RS05345	0.39	-0.2
1,101,816	+		DZA65_RS05345	0.40	+0.9
1,101,816	+		DZA65_RS05345	0.40	-0.1
1,101,816	+		DZA65_RS05345	0.40	+0.3
1,101,892	-		DZA65_RS05345	0.46	+0.4
1,102,027	+		DZA65_RS05345	0.57	-2.2
1,102,027	+		DZA65_RS05345	0.57	-1.2
1,102,027	+		DZA65_RS05345	0.57	+0.8
1,102,027	+		DZA65_RS05345	0.57	-0.4
1,102,027	+		DZA65_RS05345	0.57	-0.5
1,102,027	+		DZA65_RS05345	0.57	+0.1
1,102,027	+		DZA65_RS05345	0.57	-0.5
1,102,027	+		DZA65_RS05345	0.57	-1.5
1,102,027	+		DZA65_RS05345	0.57	+0.2
1,102,027	+		DZA65_RS05345	0.57	-1.8
1,102,027	+		DZA65_RS05345	0.57	+1.0
1,102,027	+				-0.5
1,102,027	+		DZA65_RS05345	0.57	+0.5
1,102,027	+		DZA65_RS05345	0.57	+0.2
1,102,027	+		DZA65_RS05345	0.57	-2.2
1,102,027	+		DZA65_RS05345	0.57	-0.8
1,102,027	+		DZA65_RS05345	0.57	-0.7
1,102,028	-		DZA65_RS05345	0.57	-1.8
1,102,028	-		DZA65_RS05345	0.57	-1.8
1,102,028	-		DZA65_RS05345	0.57	-1.0
1,102,028	-		DZA65_RS05345	0.57	-2.0
1,102,028	-		DZA65_RS05345	0.57	+0.2
1,102,028	-		DZA65_RS05345	0.57	+1.0
1,102,028	-		DZA65_RS05345	0.57	-1.2
1,102,028	-		DZA65_RS05345	0.57	-2.0
1,102,028	-		DZA65_RS05345	0.57	-2.5
1,102,028	-		DZA65_RS05345	0.57	-1.5
1,102,028	-		DZA65_RS05345	0.57	+0.5
1,102,028	-		DZA65_RS05345	0.57	+0.1
1,102,029	+		DZA65_RS05345	0.57	+0.8
1,102,029	+		DZA65_RS05345	0.57	+0.4
1,102,030	-		DZA65_RS05345	0.57	-1.0
1,102,067	+		DZA65_RS05345	0.60	+0.5
1,102,067	+		DZA65_RS05345	0.60	-2.4
1,102,068	-		DZA65_RS05345	0.60	+1.0