Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04430 and DZA65_RS04440 are separated by 249 nucleotides DZA65_RS04440 and DZA65_RS04445 are separated by 30 nucleotides DZA65_RS04445 and DZA65_RS04450 are separated by 62 nucleotides DZA65_RS04450 and DZA65_RS04455 are separated by 62 nucleotides
DZA65_RS04430: DZA65_RS04430 - multidrug/biocide efflux PACE transporter, at 925,680 to 926,147
_RS04430
DZA65_RS04440: DZA65_RS04440 - DNA oxidative demethylase AlkB, at 926,397 to 927,050
_RS04440
DZA65_RS04445: DZA65_RS04445 - FAD-dependent oxidoreductase, at 927,081 to 928,652
_RS04445
DZA65_RS04450: DZA65_RS04450 - FMN-binding protein, at 928,715 to 929,065
_RS04450
DZA65_RS04455: DZA65_RS04455 - MFS transporter, at 929,128 to 930,507
_RS04455
Position (kb) 927
928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.083 kb on - strand, within DZA65_RS04430 at 926.083 kb on - strand, within DZA65_RS04430 at 926.083 kb on - strand, within DZA65_RS04430 at 926.083 kb on - strand, within DZA65_RS04430 at 926.083 kb on - strand, within DZA65_RS04430 at 926.146 kb on - strand at 926.180 kb on - strand at 926.310 kb on - strand at 926.325 kb on + strand at 926.359 kb on + strand at 926.359 kb on + strand at 926.359 kb on + strand at 926.360 kb on - strand at 926.360 kb on - strand at 926.360 kb on - strand at 926.570 kb on + strand, within DZA65_RS04440 at 926.570 kb on + strand, within DZA65_RS04440 at 926.570 kb on + strand at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.637 kb on + strand, within DZA65_RS04440 at 926.638 kb on - strand, within DZA65_RS04440 at 926.958 kb on + strand, within DZA65_RS04440 at 926.958 kb on + strand, within DZA65_RS04440 at 926.959 kb on - strand, within DZA65_RS04440 at 926.959 kb on - strand, within DZA65_RS04440 at 926.961 kb on + strand, within DZA65_RS04440 at 926.961 kb on + strand, within DZA65_RS04440 at 926.962 kb on - strand, within DZA65_RS04440 at 926.962 kb on - strand, within DZA65_RS04440 at 926.962 kb on - strand, within DZA65_RS04440 at 927.026 kb on + strand at 927.027 kb on - strand at 927.027 kb on - strand at 927.027 kb on - strand at 927.082 kb on + strand at 927.103 kb on + strand at 927.103 kb on + strand at 927.104 kb on - strand at 927.181 kb on + strand at 927.181 kb on + strand at 927.181 kb on + strand at 927.181 kb on + strand at 927.181 kb on + strand at 927.182 kb on - strand at 927.182 kb on - strand at 927.193 kb on + strand at 927.193 kb on + strand at 927.193 kb on + strand at 927.193 kb on + strand at 927.193 kb on + strand at 927.194 kb on - strand at 927.194 kb on - strand at 927.223 kb on + strand at 927.223 kb on + strand at 927.223 kb on + strand at 927.223 kb on + strand at 927.224 kb on - strand at 927.328 kb on + strand, within DZA65_RS04445 at 927.359 kb on - strand, within DZA65_RS04445 at 927.359 kb on - strand, within DZA65_RS04445 at 927.359 kb on - strand, within DZA65_RS04445 at 927.365 kb on + strand, within DZA65_RS04445 at 927.365 kb on + strand, within DZA65_RS04445 at 927.366 kb on - strand, within DZA65_RS04445 at 927.582 kb on + strand, within DZA65_RS04445 at 927.583 kb on - strand, within DZA65_RS04445 at 927.583 kb on - strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.686 kb on + strand, within DZA65_RS04445 at 927.686 kb on + strand, within DZA65_RS04445 at 927.687 kb on - strand, within DZA65_RS04445 at 927.687 kb on - strand, within DZA65_RS04445 at 927.687 kb on - strand, within DZA65_RS04445 at 927.739 kb on + strand, within DZA65_RS04445 at 927.740 kb on - strand, within DZA65_RS04445 at 927.740 kb on - strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.813 kb on + strand, within DZA65_RS04445 at 927.813 kb on + strand, within DZA65_RS04445 at 927.814 kb on - strand, within DZA65_RS04445 at 927.814 kb on - strand, within DZA65_RS04445 at 927.916 kb on + strand, within DZA65_RS04445 at 927.916 kb on + strand, within DZA65_RS04445 at 927.916 kb on + strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.961 kb on - strand, within DZA65_RS04445 at 927.974 kb on + strand, within DZA65_RS04445 at 927.975 kb on - strand, within DZA65_RS04445 at 927.975 kb on - strand, within DZA65_RS04445 at 927.975 kb on - strand, within DZA65_RS04445 at 927.981 kb on + strand, within DZA65_RS04445 at 927.982 kb on - strand, within DZA65_RS04445 at 927.982 kb on - strand, within DZA65_RS04445 at 927.982 kb on - strand, within DZA65_RS04445 at 928.076 kb on + strand, within DZA65_RS04445 at 928.077 kb on - strand, within DZA65_RS04445 at 928.077 kb on - strand, within DZA65_RS04445 at 928.077 kb on - strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.291 kb on + strand, within DZA65_RS04445 at 928.292 kb on - strand, within DZA65_RS04445 at 928.292 kb on - strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.458 kb on - strand, within DZA65_RS04445 at 928.548 kb on - strand at 928.617 kb on + strand at 928.653 kb on - strand at 928.653 kb on - strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.656 kb on - strand at 928.656 kb on - strand at 928.656 kb on - strand at 928.672 kb on - strand at 928.672 kb on - strand at 928.737 kb on + strand at 928.972 kb on - strand, within DZA65_RS04450 at 929.065 kb on + strand at 929.065 kb on + strand at 929.066 kb on - strand at 929.066 kb on - strand at 929.066 kb on - strand at 929.089 kb on - strand at 929.097 kb on - strand at 929.099 kb on + strand at 929.099 kb on + strand at 929.100 kb on - strand at 929.103 kb on + strand at 929.104 kb on - strand at 929.104 kb on - strand at 929.104 kb on - strand at 929.146 kb on + strand at 929.146 kb on + strand at 929.146 kb on + strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 926,082 + DZA65_RS04430 0.86 +0.8 926,082 + DZA65_RS04430 0.86 -0.1 926,082 + DZA65_RS04430 0.86 +0.2 926,082 + DZA65_RS04430 0.86 +1.1 926,082 + DZA65_RS04430 0.86 +1.3 926,082 + DZA65_RS04430 0.86 -0.5 926,082 + DZA65_RS04430 0.86 -0.2 926,083 - DZA65_RS04430 0.86 -2.5 926,083 - DZA65_RS04430 0.86 +1.5 926,083 - DZA65_RS04430 0.86 +0.2 926,083 - DZA65_RS04430 0.86 +2.2 926,083 - DZA65_RS04430 0.86 -2.0 926,146 - -1.2 926,180 - +0.9 926,310 - -0.2 926,325 + +2.2 926,359 + +0.2 926,359 + +0.5 926,359 + -3.1 926,360 - -2.7 926,360 - -0.5 926,360 - -1.2 926,570 + DZA65_RS04440 0.26 +0.6 926,570 + DZA65_RS04440 0.26 +0.3 926,570 + -2.4 926,571 - DZA65_RS04440 0.27 -2.0 926,571 - DZA65_RS04440 0.27 -0.4 926,571 - DZA65_RS04440 0.27 +0.1 926,571 - DZA65_RS04440 0.27 -2.4 926,571 - DZA65_RS04440 0.27 +1.3 926,571 - DZA65_RS04440 0.27 -1.8 926,571 - DZA65_RS04440 0.27 -1.5 926,571 - DZA65_RS04440 0.27 -0.2 926,571 - DZA65_RS04440 0.27 -1.5 926,637 + DZA65_RS04440 0.37 +0.8 926,638 - DZA65_RS04440 0.37 +0.3 926,958 + DZA65_RS04440 0.86 +1.2 926,958 + DZA65_RS04440 0.86 -1.2 926,959 - DZA65_RS04440 0.86 -0.7 926,959 - DZA65_RS04440 0.86 -1.8 926,961 + DZA65_RS04440 0.86 +1.1 926,961 + DZA65_RS04440 0.86 -1.2 926,962 - DZA65_RS04440 0.86 -1.6 926,962 - DZA65_RS04440 0.86 -3.7 926,962 - DZA65_RS04440 0.86 -0.1 927,026 + -0.8 927,027 - -1.8 927,027 - -1.4 927,027 - +0.4 927,082 + -0.6 927,103 + +0.0 927,103 + -1.2 927,104 - -1.5 927,181 + +2.6 927,181 + +1.0 927,181 + -1.1 927,181 + -0.3 927,181 + +0.7 927,182 - -0.8 927,182 - +0.6 927,193 + -0.8 927,193 + +0.8 927,193 + +2.5 927,193 + +0.8 927,193 + -0.3 927,194 - -2.2 927,194 - -1.8 927,223 + -0.8 927,223 + +0.8 927,223 + +0.5 927,223 + -0.5 927,224 - +0.0 927,328 + DZA65_RS04445 0.16 +0.1 927,359 - DZA65_RS04445 0.18 -0.8 927,359 - DZA65_RS04445 0.18 -1.5 927,359 - DZA65_RS04445 0.18 -0.2 927,365 + DZA65_RS04445 0.18 -0.8 927,365 + DZA65_RS04445 0.18 -0.3 927,366 - DZA65_RS04445 0.18 +0.8 927,582 + DZA65_RS04445 0.32 -1.9 927,583 - DZA65_RS04445 0.32 +1.4 927,583 - DZA65_RS04445 0.32 -0.4 927,637 + DZA65_RS04445 0.35 +0.1 927,637 + DZA65_RS04445 0.35 -1.2 927,637 + DZA65_RS04445 0.35 +2.1 927,637 + DZA65_RS04445 0.35 +2.0 927,637 + DZA65_RS04445 0.35 -2.4 927,637 + DZA65_RS04445 0.35 -0.3 927,638 - DZA65_RS04445 0.35 -0.4 927,638 - DZA65_RS04445 0.35 -1.0 927,638 - DZA65_RS04445 0.35 -1.9 927,638 - DZA65_RS04445 0.35 +1.1 927,638 - DZA65_RS04445 0.35 -0.2 927,638 - DZA65_RS04445 0.35 +1.4 927,686 + DZA65_RS04445 0.38 +2.0 927,686 + DZA65_RS04445 0.38 -1.2 927,687 - DZA65_RS04445 0.39 +0.3 927,687 - DZA65_RS04445 0.39 +0.4 927,687 - DZA65_RS04445 0.39 +2.6 927,739 + DZA65_RS04445 0.42 -1.8 927,740 - DZA65_RS04445 0.42 +2.0 927,740 - DZA65_RS04445 0.42 -1.5 927,810 + DZA65_RS04445 0.46 -2.2 927,810 + DZA65_RS04445 0.46 +1.5 927,810 + DZA65_RS04445 0.46 +0.7 927,810 + DZA65_RS04445 0.46 +0.2 927,810 + DZA65_RS04445 0.46 +0.4 927,810 + DZA65_RS04445 0.46 -0.8 927,810 + DZA65_RS04445 0.46 +0.5 927,810 + DZA65_RS04445 0.46 -0.8 927,810 + DZA65_RS04445 0.46 +2.4 927,810 + +0.1 927,811 - DZA65_RS04445 0.46 -1.5 927,811 - DZA65_RS04445 0.46 -1.8 927,811 - DZA65_RS04445 0.46 +0.4 927,811 - DZA65_RS04445 0.46 -2.4 927,811 - DZA65_RS04445 0.46 +0.5 927,811 - DZA65_RS04445 0.46 +0.8 927,811 - DZA65_RS04445 0.46 +1.4 927,811 - DZA65_RS04445 0.46 +2.4 927,811 - DZA65_RS04445 0.46 -2.7 927,811 - DZA65_RS04445 0.46 +2.8 927,811 - DZA65_RS04445 0.46 -0.6 927,811 - DZA65_RS04445 0.46 -0.2 927,811 - DZA65_RS04445 0.46 +1.1 927,811 - DZA65_RS04445 0.46 +1.3 927,811 - DZA65_RS04445 0.46 -1.2 927,813 + DZA65_RS04445 0.47 -2.0 927,813 + DZA65_RS04445 0.47 -0.1 927,814 - DZA65_RS04445 0.47 +0.2 927,814 - DZA65_RS04445 0.47 +0.1 927,916 + DZA65_RS04445 0.53 -0.8 927,916 + DZA65_RS04445 0.53 -1.2 927,916 + DZA65_RS04445 0.53 -1.2 927,917 - DZA65_RS04445 0.53 +0.6 927,917 - DZA65_RS04445 0.53 +1.4 927,917 - DZA65_RS04445 0.53 +1.2 927,917 - DZA65_RS04445 0.53 -0.8 927,917 - DZA65_RS04445 0.53 -1.5 927,917 - DZA65_RS04445 0.53 +0.2 927,961 - DZA65_RS04445 0.56 +1.6 927,974 + DZA65_RS04445 0.57 -1.2 927,975 - DZA65_RS04445 0.57 +0.1 927,975 - DZA65_RS04445 0.57 -1.5 927,975 - DZA65_RS04445 0.57 -0.1 927,981 + DZA65_RS04445 0.57 +0.7 927,982 - DZA65_RS04445 0.57 -0.2 927,982 - DZA65_RS04445 0.57 +0.3 927,982 - DZA65_RS04445 0.57 -1.2 928,076 + DZA65_RS04445 0.63 -1.8 928,077 - DZA65_RS04445 0.63 -3.2 928,077 - DZA65_RS04445 0.63 -2.0 928,077 - DZA65_RS04445 0.63 -1.8 928,192 + DZA65_RS04445 0.71 -1.5 928,192 + DZA65_RS04445 0.71 -1.8 928,192 + DZA65_RS04445 0.71 -0.9 928,192 + DZA65_RS04445 0.71 +0.1 928,192 + DZA65_RS04445 0.71 +0.8 928,192 + DZA65_RS04445 0.71 -1.2 928,192 + DZA65_RS04445 0.71 -0.7 928,192 + DZA65_RS04445 0.71 +1.4 928,192 + DZA65_RS04445 0.71 +0.1 928,193 - DZA65_RS04445 0.71 -0.2 928,193 - DZA65_RS04445 0.71 +2.2 928,193 - DZA65_RS04445 0.71 +0.6 928,193 - DZA65_RS04445 0.71 +0.3 928,193 - DZA65_RS04445 0.71 -1.3 928,193 - DZA65_RS04445 0.71 -0.2 928,193 - DZA65_RS04445 0.71 -1.2 928,193 - DZA65_RS04445 0.71 -0.9 928,193 - DZA65_RS04445 0.71 +0.4 928,291 + DZA65_RS04445 0.77 +1.2 928,292 - DZA65_RS04445 0.77 -0.5 928,292 - DZA65_RS04445 0.77 +4.1 928,329 + DZA65_RS04445 0.79 -0.8 928,329 + DZA65_RS04445 0.79 -0.4 928,329 + DZA65_RS04445 0.79 +1.0 928,329 + DZA65_RS04445 0.79 -2.0 928,330 - DZA65_RS04445 0.79 -0.8 928,330 - DZA65_RS04445 0.79 -0.6 928,330 - DZA65_RS04445 0.79 -0.0 928,330 - DZA65_RS04445 0.79 +1.8 928,330 - DZA65_RS04445 0.79 +1.1 928,458 - DZA65_RS04445 0.88 +1.3 928,548 - -0.8 928,617 + -1.2 928,653 - +1.1 928,653 - +0.6 928,655 + -1.2 928,655 + -1.2 928,655 + +0.8 928,655 + +0.3 928,656 - -1.2 928,656 - -2.9 928,656 - +0.3 928,672 - +1.0 928,672 - +0.8 928,737 + -0.5 928,972 - DZA65_RS04450 0.73 +2.4 929,065 + -0.8 929,065 + -0.4 929,066 - -0.4 929,066 - -1.5 929,066 - -1.4 929,089 - -0.8 929,097 - +0.7 929,099 + -0.6 929,099 + +0.2 929,100 - -0.2 929,103 + +0.7 929,104 - -2.2 929,104 - +2.4 929,104 - +0.6 929,146 + +0.4 929,146 + -2.2 929,146 + -0.5 929,147 - -0.4 929,147 - -1.2 929,147 - -0.8 929,147 - +0.8 929,149 + +0.4 929,149 + -0.3 929,149 + -1.7 929,149 + -0.2 929,149 + -2.7 929,149 + -0.2 929,149 + -1.5 929,150 - +0.5 929,150 - +0.4 929,150 - +0.5 929,150 - -0.8 929,150 - +0.6 929,150 - +1.5 929,150 - +0.5 929,150 - -0.8 929,150 - -1.0 929,150 - -0.2 929,150 - -1.8 929,150 - +0.5 929,150 - -0.9 929,150 - -2.0 929,150 - -0.2
Or see this region's nucleotide sequence