Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04280 and DZA65_RS04285 are separated by 500 nucleotides DZA65_RS04285 and DZA65_RS04290 are separated by 446 nucleotides
DZA65_RS04280: DZA65_RS04280 - GNAT family acetyltransferase, at 893,174 to 893,599
_RS04280
DZA65_RS04285: DZA65_RS04285 - RpoE-regulated lipoprotein, at 894,100 to 894,708
_RS04285
DZA65_RS04290: DZA65_RS04290 - N-glycosyltransferase, at 895,155 to 896,429
_RS04290
Position (kb) 894
895 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 893.108 kb on + strand at 893.108 kb on + strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.187 kb on + strand at 893.187 kb on + strand at 893.287 kb on + strand, within DZA65_RS04280 at 893.287 kb on + strand, within DZA65_RS04280 at 893.288 kb on - strand, within DZA65_RS04280 at 893.288 kb on - strand, within DZA65_RS04280 at 893.381 kb on + strand, within DZA65_RS04280 at 893.382 kb on - strand, within DZA65_RS04280 at 893.382 kb on - strand at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.594 kb on + strand at 893.657 kb on - strand at 893.657 kb on - strand at 893.752 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.849 kb on + strand at 893.850 kb on - strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.958 kb on + strand at 893.958 kb on + strand at 894.047 kb on + strand at 894.082 kb on + strand at 894.082 kb on + strand at 894.082 kb on + strand at 894.082 kb on + strand at 894.083 kb on - strand at 894.083 kb on - strand at 894.084 kb on + strand at 894.084 kb on + strand at 894.085 kb on - strand at 894.261 kb on + strand, within DZA65_RS04285 at 894.367 kb on + strand, within DZA65_RS04285 at 894.368 kb on - strand, within DZA65_RS04285 at 894.505 kb on + strand, within DZA65_RS04285 at 894.505 kb on + strand, within DZA65_RS04285 at 894.598 kb on + strand, within DZA65_RS04285 at 894.598 kb on + strand, within DZA65_RS04285 at 894.599 kb on - strand, within DZA65_RS04285 at 894.599 kb on - strand, within DZA65_RS04285 at 894.651 kb on + strand at 894.652 kb on - strand at 894.717 kb on + strand at 894.717 kb on + strand at 894.717 kb on + strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.805 kb on + strand at 894.806 kb on - strand at 894.806 kb on - strand at 894.837 kb on + strand at 894.838 kb on - strand at 894.838 kb on - strand at 894.853 kb on - strand at 894.884 kb on + strand at 894.884 kb on + strand at 894.887 kb on + strand at 894.887 kb on + strand at 894.888 kb on - strand at 894.945 kb on + strand at 894.946 kb on - strand at 894.946 kb on - strand at 894.946 kb on - strand at 894.959 kb on + strand at 894.959 kb on + strand at 894.960 kb on - strand at 894.960 kb on - strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.972 kb on - strand at 894.972 kb on - strand at 894.972 kb on - strand at 894.996 kb on + strand at 894.996 kb on + strand at 894.997 kb on - strand at 894.997 kb on - strand at 894.997 kb on - strand at 895.009 kb on - strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.074 kb on - strand at 895.082 kb on + strand at 895.083 kb on - strand at 895.083 kb on - strand at 895.143 kb on + strand at 895.143 kb on + strand at 895.143 kb on + strand at 895.144 kb on - strand at 895.144 kb on - strand at 895.144 kb on - strand at 895.200 kb on + strand at 895.200 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.235 kb on + strand at 895.235 kb on + strand at 895.235 kb on + strand at 895.236 kb on - strand at 895.307 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.434 kb on - strand, within DZA65_RS04290 at 895.513 kb on - strand, within DZA65_RS04290 at 895.513 kb on - strand, within DZA65_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 893,108 + +0.9 893,108 + +1.8 893,109 - -0.8 893,109 - +0.7 893,109 - -0.5 893,109 - +0.8 893,158 + +0.8 893,158 + +0.1 893,158 + -0.4 893,158 + +1.8 893,158 + -1.2 893,159 - -2.0 893,159 - -2.0 893,159 - +0.3 893,159 - +0.2 893,159 - +1.2 893,159 - +0.2 893,159 - +1.3 893,159 - -0.4 893,159 - +0.2 893,159 - -1.2 893,159 - -0.2 893,187 + -0.2 893,187 + -2.0 893,287 + DZA65_RS04280 0.27 -1.2 893,287 + DZA65_RS04280 0.27 -1.5 893,288 - DZA65_RS04280 0.27 -1.5 893,288 - DZA65_RS04280 0.27 +2.7 893,381 + DZA65_RS04280 0.49 +0.4 893,382 - DZA65_RS04280 0.49 -1.8 893,382 - -1.2 893,384 + DZA65_RS04280 0.49 -1.0 893,384 + DZA65_RS04280 0.49 -0.4 893,384 + DZA65_RS04280 0.49 +0.0 893,384 + DZA65_RS04280 0.49 +1.5 893,384 + DZA65_RS04280 0.49 -0.2 893,385 - DZA65_RS04280 0.50 +0.8 893,385 - DZA65_RS04280 0.50 +0.4 893,385 - DZA65_RS04280 0.50 +0.2 893,385 - DZA65_RS04280 0.50 -2.0 893,385 - DZA65_RS04280 0.50 -2.6 893,525 + DZA65_RS04280 0.82 -2.2 893,525 + DZA65_RS04280 0.82 -0.6 893,525 + DZA65_RS04280 0.82 -0.9 893,526 - DZA65_RS04280 0.83 +0.2 893,526 - DZA65_RS04280 0.83 +0.6 893,526 - DZA65_RS04280 0.83 -0.2 893,526 - DZA65_RS04280 0.83 -1.5 893,526 - DZA65_RS04280 0.83 +3.0 893,526 - DZA65_RS04280 0.83 -2.3 893,526 - DZA65_RS04280 0.83 -2.2 893,540 + DZA65_RS04280 0.86 -3.3 893,540 + DZA65_RS04280 0.86 +0.5 893,540 + DZA65_RS04280 0.86 -0.8 893,540 + -2.3 893,540 + DZA65_RS04280 0.86 -0.5 893,540 + DZA65_RS04280 0.86 -0.1 893,594 + -1.0 893,657 - +3.6 893,657 - +0.6 893,752 + -0.0 893,756 + -0.4 893,756 + +1.1 893,756 + -0.7 893,756 + -0.4 893,757 - +0.5 893,757 - -1.5 893,757 - -0.2 893,757 - +1.2 893,757 - -0.0 893,757 - +0.8 893,849 + -0.8 893,850 - +1.1 893,870 + -1.0 893,870 + -0.4 893,870 + +0.7 893,870 + +0.8 893,870 + +1.1 893,870 + -1.2 893,871 - +1.8 893,871 - +0.3 893,871 - -1.0 893,871 - -1.3 893,871 - -0.3 893,871 - -0.2 893,871 - +0.0 893,958 + -0.0 893,958 + -2.0 894,047 + -2.5 894,082 + -0.8 894,082 + -0.3 894,082 + -2.3 894,082 + +0.2 894,083 - -0.9 894,083 - -0.5 894,084 + +1.6 894,084 + +1.2 894,085 - -1.3 894,261 + DZA65_RS04285 0.26 +1.2 894,367 + DZA65_RS04285 0.44 +0.3 894,368 - DZA65_RS04285 0.44 -2.0 894,505 + DZA65_RS04285 0.67 -1.8 894,505 + DZA65_RS04285 0.67 -0.0 894,598 + DZA65_RS04285 0.82 -1.3 894,598 + DZA65_RS04285 0.82 +1.7 894,599 - DZA65_RS04285 0.82 +2.4 894,599 - DZA65_RS04285 0.82 +0.5 894,651 + +0.2 894,652 - -1.5 894,717 + +0.2 894,717 + +0.8 894,717 + -1.8 894,718 - -1.2 894,718 - +1.8 894,718 - -1.5 894,718 - -2.0 894,805 + +0.2 894,806 - -0.8 894,806 - -0.1 894,837 + -0.9 894,838 - +0.5 894,838 - -0.6 894,853 - +0.8 894,884 + -0.0 894,884 + +0.6 894,887 + -1.2 894,887 + -0.2 894,888 - -0.9 894,945 + -2.3 894,946 - -3.9 894,946 - -0.2 894,946 - +0.8 894,959 + +2.4 894,959 + +1.2 894,960 - +0.5 894,960 - -1.2 894,971 + -0.4 894,971 + +1.7 894,971 + +1.6 894,971 + +1.9 894,971 + -0.3 894,972 - +0.8 894,972 - -1.8 894,972 - +0.1 894,996 + +1.3 894,996 + -1.0 894,997 - +1.7 894,997 - +0.2 894,997 - -3.1 895,009 - -0.8 895,023 + -0.2 895,023 + -0.2 895,023 + +2.0 895,023 + +0.7 895,023 + -2.0 895,023 + -0.8 895,023 + +1.6 895,024 - +0.8 895,024 - -1.0 895,024 - -1.2 895,024 - +0.2 895,074 - -0.8 895,082 + -0.3 895,083 - -0.8 895,083 - +0.2 895,143 + +0.4 895,143 + +0.2 895,143 + -1.0 895,144 - +1.7 895,144 - -0.6 895,144 - +1.4 895,200 + +0.0 895,200 + +0.5 895,205 + -0.1 895,205 + +0.6 895,205 + +0.4 895,205 + -1.8 895,206 - -0.2 895,206 - +0.6 895,206 - -0.4 895,206 - +1.0 895,206 - +0.8 895,206 - +0.2 895,206 - -1.1 895,206 - +0.9 895,206 - -1.4 895,235 + -1.5 895,235 + +0.9 895,235 + +0.4 895,236 - +1.1 895,307 + DZA65_RS04290 0.12 +0.8 895,433 + DZA65_RS04290 0.22 +0.4 895,433 + DZA65_RS04290 0.22 -1.2 895,433 + DZA65_RS04290 0.22 -0.5 895,433 + DZA65_RS04290 0.22 +0.1 895,433 + DZA65_RS04290 0.22 +1.4 895,434 - DZA65_RS04290 0.22 -2.0 895,513 - DZA65_RS04290 0.28 -0.5 895,513 - DZA65_RS04290 0.28 +0.8
Or see this region's nucleotide sequence