Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02195 and DZA65_RS02200 are separated by 149 nucleotides DZA65_RS02200 and DZA65_RS02205 are separated by 472 nucleotides
DZA65_RS02195: DZA65_RS02195 - hypothetical protein, at 476,944 to 478,332
_RS02195
DZA65_RS02200: DZA65_RS02200 - hypothetical protein, at 478,482 to 478,820
_RS02200
DZA65_RS02205: DZA65_RS02205 - hypothetical protein, at 479,293 to 480,096
_RS02205
Position (kb) 478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 477.504 kb on - strand, within DZA65_RS02195 at 477.504 kb on - strand, within DZA65_RS02195 at 477.539 kb on + strand, within DZA65_RS02195 at 477.540 kb on - strand, within DZA65_RS02195 at 477.838 kb on + strand, within DZA65_RS02195 at 477.838 kb on + strand, within DZA65_RS02195 at 477.839 kb on - strand, within DZA65_RS02195 at 477.839 kb on - strand, within DZA65_RS02195 at 477.839 kb on - strand, within DZA65_RS02195 at 477.839 kb on - strand, within DZA65_RS02195 at 477.839 kb on - strand, within DZA65_RS02195 at 477.946 kb on + strand, within DZA65_RS02195 at 477.946 kb on + strand, within DZA65_RS02195 at 477.946 kb on + strand, within DZA65_RS02195 at 477.947 kb on - strand, within DZA65_RS02195 at 477.947 kb on - strand, within DZA65_RS02195 at 477.957 kb on + strand, within DZA65_RS02195 at 477.998 kb on + strand, within DZA65_RS02195 at 478.008 kb on + strand, within DZA65_RS02195 at 478.008 kb on + strand, within DZA65_RS02195 at 478.008 kb on + strand, within DZA65_RS02195 at 478.008 kb on + strand, within DZA65_RS02195 at 478.041 kb on + strand, within DZA65_RS02195 at 478.042 kb on - strand, within DZA65_RS02195 at 478.042 kb on - strand, within DZA65_RS02195 at 478.064 kb on - strand, within DZA65_RS02195 at 478.082 kb on + strand, within DZA65_RS02195 at 478.132 kb on + strand, within DZA65_RS02195 at 478.133 kb on - strand, within DZA65_RS02195 at 478.171 kb on + strand, within DZA65_RS02195 at 478.172 kb on - strand, within DZA65_RS02195 at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.256 kb on - strand at 478.256 kb on - strand at 478.256 kb on - strand at 478.256 kb on - strand at 478.331 kb on - strand at 478.331 kb on - strand at 478.331 kb on - strand at 478.331 kb on - strand at 478.333 kb on + strand at 478.333 kb on + strand at 478.333 kb on + strand at 478.334 kb on - strand at 478.334 kb on - strand at 478.334 kb on - strand at 478.334 kb on - strand at 478.397 kb on + strand at 478.398 kb on - strand at 478.433 kb on + strand at 478.433 kb on + strand at 478.434 kb on - strand at 478.434 kb on - strand at 478.434 kb on - strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.459 kb on - strand at 478.459 kb on - strand at 478.492 kb on + strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.535 kb on - strand, within DZA65_RS02200 at 478.563 kb on + strand, within DZA65_RS02200 at 478.564 kb on - strand, within DZA65_RS02200 at 478.744 kb on + strand, within DZA65_RS02200 at 478.807 kb on + strand at 478.807 kb on + strand at 478.807 kb on + strand at 478.807 kb on + strand at 478.807 kb on + strand at 478.807 kb on + strand at 478.808 kb on - strand at 478.820 kb on + strand at 478.820 kb on + strand at 478.820 kb on + strand at 478.820 kb on + strand at 478.821 kb on - strand at 478.821 kb on - strand at 478.821 kb on - strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.825 kb on - strand at 478.825 kb on - strand at 478.825 kb on - strand at 478.825 kb on - strand at 478.825 kb on - strand at 478.839 kb on + strand at 478.839 kb on + strand at 478.839 kb on + strand at 478.839 kb on + strand at 478.840 kb on - strand at 478.840 kb on - strand at 478.840 kb on - strand at 478.840 kb on - strand at 478.840 kb on - strand at 478.840 kb on - strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.875 kb on + strand at 478.875 kb on + strand at 478.875 kb on + strand at 478.875 kb on + strand at 478.876 kb on - strand at 478.876 kb on - strand at 479.003 kb on + strand at 479.003 kb on + strand at 479.004 kb on - strand at 479.004 kb on - strand at 479.004 kb on - strand at 479.007 kb on + strand at 479.008 kb on - strand at 479.008 kb on - strand at 479.009 kb on + strand at 479.009 kb on + strand at 479.010 kb on - strand at 479.010 kb on - strand at 479.010 kb on - strand at 479.097 kb on + strand at 479.102 kb on + strand at 479.150 kb on + strand at 479.150 kb on + strand at 479.150 kb on + strand at 479.151 kb on - strand at 479.151 kb on - strand at 479.256 kb on + strand at 479.256 kb on + strand at 479.256 kb on + strand at 479.257 kb on - strand at 479.257 kb on - strand at 479.302 kb on + strand at 479.302 kb on + strand at 479.347 kb on - strand at 479.347 kb on - strand at 479.372 kb on + strand at 479.372 kb on + strand at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.380 kb on + strand, within DZA65_RS02205 at 479.380 kb on + strand, within DZA65_RS02205 at 479.380 kb on + strand, within DZA65_RS02205 at 479.381 kb on - strand, within DZA65_RS02205 at 479.381 kb on - strand, within DZA65_RS02205 at 479.381 kb on - strand, within DZA65_RS02205 at 479.440 kb on - strand, within DZA65_RS02205 at 479.612 kb on + strand, within DZA65_RS02205 at 479.612 kb on + strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.630 kb on - strand, within DZA65_RS02205 at 479.630 kb on - strand, within DZA65_RS02205 at 479.776 kb on + strand, within DZA65_RS02205 at 479.777 kb on - strand, within DZA65_RS02205 at 479.777 kb on - strand, within DZA65_RS02205 at 479.787 kb on - strand, within DZA65_RS02205 at 479.787 kb on - strand, within DZA65_RS02205 at 479.787 kb on - strand, within DZA65_RS02205
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 477,504 - DZA65_RS02195 0.40 -0.1 477,504 - DZA65_RS02195 0.40 +1.7 477,539 + DZA65_RS02195 0.43 +1.1 477,540 - DZA65_RS02195 0.43 -0.5 477,838 + DZA65_RS02195 0.64 -0.2 477,838 + DZA65_RS02195 0.64 -0.1 477,839 - DZA65_RS02195 0.64 -0.1 477,839 - DZA65_RS02195 0.64 +1.1 477,839 - DZA65_RS02195 0.64 +0.4 477,839 - DZA65_RS02195 0.64 +0.4 477,839 - DZA65_RS02195 0.64 +2.1 477,946 + DZA65_RS02195 0.72 +0.5 477,946 + DZA65_RS02195 0.72 +1.1 477,946 + DZA65_RS02195 0.72 -0.6 477,947 - DZA65_RS02195 0.72 +1.8 477,947 - DZA65_RS02195 0.72 +0.1 477,957 + DZA65_RS02195 0.73 +0.6 477,998 + DZA65_RS02195 0.76 -0.9 478,008 + DZA65_RS02195 0.77 -0.9 478,008 + DZA65_RS02195 0.77 -1.2 478,008 + DZA65_RS02195 0.77 +1.7 478,008 + DZA65_RS02195 0.77 +0.8 478,041 + DZA65_RS02195 0.79 -0.2 478,042 - DZA65_RS02195 0.79 -1.3 478,042 - DZA65_RS02195 0.79 -0.3 478,064 - DZA65_RS02195 0.81 +1.1 478,082 + DZA65_RS02195 0.82 -1.9 478,132 + DZA65_RS02195 0.86 -0.8 478,133 - DZA65_RS02195 0.86 -1.6 478,171 + DZA65_RS02195 0.88 +0.4 478,172 - DZA65_RS02195 0.88 -1.3 478,255 + -1.3 478,255 + +0.9 478,255 + +0.3 478,255 + -0.4 478,255 + -0.2 478,255 + -0.5 478,255 + -1.3 478,255 + -0.2 478,255 + -1.8 478,255 + +0.9 478,255 + +0.6 478,256 - +0.2 478,256 - -2.3 478,256 - -1.8 478,256 - +0.5 478,331 - +1.4 478,331 - -1.9 478,331 - +0.4 478,331 - +0.1 478,333 + +1.2 478,333 + -0.9 478,333 + -0.9 478,334 - +2.9 478,334 - +1.5 478,334 - +0.1 478,334 - +0.5 478,397 + +0.7 478,398 - -1.6 478,433 + -0.3 478,433 + -0.4 478,434 - +4.0 478,434 - -0.9 478,434 - -0.9 478,458 + +0.2 478,458 + -1.2 478,458 + +0.1 478,458 + +0.1 478,458 + -1.1 478,458 + -1.3 478,458 + +1.4 478,459 - +2.0 478,459 - +1.5 478,492 + +0.1 478,493 - +1.6 478,493 - +0.5 478,535 - DZA65_RS02200 0.16 -2.5 478,563 + DZA65_RS02200 0.24 +1.3 478,564 - DZA65_RS02200 0.24 -0.8 478,744 + DZA65_RS02200 0.77 -0.9 478,807 + -0.1 478,807 + +0.9 478,807 + +0.2 478,807 + -1.1 478,807 + -1.8 478,807 + -0.5 478,808 - +1.0 478,820 + +0.6 478,820 + -0.7 478,820 + -1.1 478,820 + +0.6 478,821 - -2.9 478,821 - +0.5 478,821 - +0.3 478,824 + -0.5 478,824 + +1.8 478,824 + +1.1 478,824 + -1.6 478,824 + +0.1 478,824 + +0.1 478,824 + -1.3 478,824 + -0.8 478,824 + -0.9 478,824 + -2.4 478,825 - -1.3 478,825 - +0.8 478,825 - +0.9 478,825 - +0.5 478,825 - -0.4 478,839 + -2.5 478,839 + +0.8 478,839 + -0.4 478,839 + +0.1 478,840 - -0.5 478,840 - +1.1 478,840 - +0.2 478,840 - -0.9 478,840 - +1.1 478,840 - +0.8 478,843 + -1.5 478,843 + -0.9 478,843 + +1.6 478,843 + -1.3 478,843 + +1.8 478,843 + +0.1 478,843 + +0.9 478,844 - +0.4 478,844 - +2.1 478,844 - -0.7 478,844 - -0.3 478,844 - -0.6 478,844 - +1.8 478,844 - +2.8 478,844 - +2.5 478,844 - -0.5 478,844 - +0.1 478,844 - -2.4 478,844 - +1.1 478,844 - +1.2 478,844 - -0.9 478,844 - -0.9 478,844 - -0.8 478,847 + -0.8 478,847 + -0.2 478,847 + +0.1 478,847 + +1.5 478,847 + +0.6 478,847 + -0.9 478,847 + +1.1 478,847 + -0.8 478,847 + -1.3 478,847 + +0.1 478,847 + -2.1 478,847 + -3.2 478,847 + -0.2 478,847 + -0.9 478,847 + +0.8 478,848 - -1.8 478,848 - +2.6 478,848 - -0.2 478,848 - +0.5 478,848 - +1.8 478,848 - +0.3 478,848 - +0.1 478,848 - +0.5 478,848 - +0.3 478,848 - +0.3 478,848 - -0.3 478,848 - -1.8 478,848 - +1.6 478,848 - +0.6 478,875 + +2.5 478,875 + -0.5 478,875 + -0.3 478,875 + +0.1 478,876 - -1.1 478,876 - -1.2 479,003 + -0.4 479,003 + -0.2 479,004 - -2.3 479,004 - +0.2 479,004 - -0.3 479,007 + -0.5 479,008 - +0.1 479,008 - -0.5 479,009 + -1.3 479,009 + +0.1 479,010 - -1.3 479,010 - -3.4 479,010 - -0.5 479,097 + -1.1 479,102 + +0.1 479,150 + +0.1 479,150 + +1.4 479,150 + -0.5 479,151 - -0.5 479,151 - +0.5 479,256 + -2.6 479,256 + +2.1 479,256 + +1.2 479,257 - -0.9 479,257 - +1.6 479,302 + +0.4 479,302 + +2.2 479,347 - +0.1 479,347 - +0.5 479,372 + +2.1 479,372 + -1.8 479,376 + DZA65_RS02205 0.10 +1.8 479,376 + DZA65_RS02205 0.10 -0.6 479,376 + DZA65_RS02205 0.10 +0.3 479,376 + DZA65_RS02205 0.10 -0.0 479,376 + DZA65_RS02205 0.10 -3.1 479,376 + DZA65_RS02205 0.10 -0.9 479,376 + DZA65_RS02205 0.10 +0.5 479,376 + DZA65_RS02205 0.10 +2.9 479,376 + DZA65_RS02205 0.10 -0.5 479,376 + DZA65_RS02205 0.10 -0.5 479,376 + DZA65_RS02205 0.10 -0.1 479,376 + DZA65_RS02205 0.10 +2.1 479,376 + DZA65_RS02205 0.10 -2.5 479,377 - DZA65_RS02205 0.10 +0.5 479,377 - DZA65_RS02205 0.10 +1.1 479,377 - DZA65_RS02205 0.10 -0.5 479,377 - DZA65_RS02205 0.10 -1.3 479,377 - DZA65_RS02205 0.10 -1.8 479,377 - DZA65_RS02205 0.10 +2.1 479,377 - DZA65_RS02205 0.10 +1.1 479,377 - DZA65_RS02205 0.10 +1.1 479,377 - DZA65_RS02205 0.10 -0.1 479,377 - DZA65_RS02205 0.10 -0.5 479,377 - DZA65_RS02205 0.10 +0.6 479,377 - DZA65_RS02205 0.10 +0.9 479,380 + DZA65_RS02205 0.11 -1.8 479,380 + DZA65_RS02205 0.11 -1.2 479,380 + DZA65_RS02205 0.11 -0.9 479,381 - DZA65_RS02205 0.11 -0.5 479,381 - DZA65_RS02205 0.11 -0.2 479,381 - DZA65_RS02205 0.11 -1.3 479,440 - DZA65_RS02205 0.18 +1.8 479,612 + DZA65_RS02205 0.40 +2.3 479,612 + DZA65_RS02205 0.40 +0.9 479,613 - DZA65_RS02205 0.40 -0.5 479,613 - -0.5 479,613 - DZA65_RS02205 0.40 +0.1 479,613 - DZA65_RS02205 0.40 -0.9 479,613 - DZA65_RS02205 0.40 -0.2 479,613 - DZA65_RS02205 0.40 -1.3 479,629 + DZA65_RS02205 0.42 +1.5 479,629 + DZA65_RS02205 0.42 +0.5 479,629 + DZA65_RS02205 0.42 +1.6 479,629 + DZA65_RS02205 0.42 -0.1 479,629 + DZA65_RS02205 0.42 +1.5 479,629 + DZA65_RS02205 0.42 -0.2 479,630 - DZA65_RS02205 0.42 +2.4 479,630 - DZA65_RS02205 0.42 -1.3 479,776 + DZA65_RS02205 0.60 -0.5 479,777 - DZA65_RS02205 0.60 +1.5 479,777 - DZA65_RS02205 0.60 +2.3 479,787 - DZA65_RS02205 0.61 +1.4 479,787 - DZA65_RS02205 0.61 -1.4 479,787 - DZA65_RS02205 0.61 -0.5
Or see this region's nucleotide sequence