Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01685 and DZA65_RS01695 are separated by 598 nucleotides DZA65_RS01695 and DZA65_RS01700 are separated by 170 nucleotides
DZA65_RS01685: DZA65_RS01685 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 366,926 to 367,795
_RS01685
DZA65_RS01695: DZA65_RS01695 - 4,5-DOPA dioxygenase extradiol, at 368,394 to 369,182
_RS01695
DZA65_RS01700: DZA65_RS01700 - glutathionylspermidine synthase family protein, at 369,353 to 370,513
_RS01700
Position (kb) 368
369
370 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 367.456 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.542 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.794 kb on - strand at 367.794 kb on - strand at 368.252 kb on - strand at 368.321 kb on + strand at 368.335 kb on + strand at 368.335 kb on + strand at 368.336 kb on - strand at 368.336 kb on - strand at 368.336 kb on - strand at 368.341 kb on + strand at 368.341 kb on + strand at 368.342 kb on - strand at 368.342 kb on - strand at 368.346 kb on + strand at 368.346 kb on + strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.363 kb on + strand at 368.363 kb on + strand at 368.372 kb on + strand at 368.381 kb on + strand at 368.393 kb on + strand at 368.393 kb on + strand at 368.466 kb on + strand at 368.466 kb on + strand at 368.467 kb on - strand at 368.467 kb on - strand at 368.483 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.544 kb on - strand, within DZA65_RS01695 at 368.573 kb on + strand, within DZA65_RS01695 at 368.573 kb on + strand, within DZA65_RS01695 at 368.574 kb on - strand, within DZA65_RS01695 at 368.661 kb on - strand, within DZA65_RS01695 at 368.697 kb on + strand, within DZA65_RS01695 at 368.697 kb on + strand, within DZA65_RS01695 at 368.698 kb on - strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.818 kb on - strand, within DZA65_RS01695 at 368.818 kb on - strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.024 kb on - strand, within DZA65_RS01695 at 369.084 kb on + strand, within DZA65_RS01695 at 369.084 kb on + strand, within DZA65_RS01695 at 369.084 kb on + strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.211 kb on + strand at 369.211 kb on + strand at 369.212 kb on - strand at 369.212 kb on - strand at 369.212 kb on - strand at 369.212 kb on - strand at 369.229 kb on + strand at 369.230 kb on - strand at 369.247 kb on - strand at 369.247 kb on - strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.253 kb on + strand at 369.253 kb on + strand at 369.253 kb on + strand at 369.253 kb on + strand at 369.253 kb on + strand at 369.253 kb on + strand at 369.254 kb on - strand at 369.254 kb on - strand at 369.254 kb on - strand at 369.254 kb on - strand at 369.254 kb on - strand at 369.270 kb on - strand at 369.289 kb on - strand at 369.289 kb on - strand at 369.289 kb on - strand at 369.289 kb on - strand at 369.289 kb on - strand at 369.308 kb on - strand at 369.308 kb on - strand at 369.308 kb on - strand at 369.308 kb on - strand at 369.345 kb on + strand at 369.367 kb on + strand at 369.367 kb on + strand at 369.367 kb on + strand at 369.368 kb on - strand at 369.368 kb on - strand at 369.368 kb on - strand at 369.375 kb on + strand at 369.375 kb on + strand at 369.376 kb on - strand at 369.398 kb on - strand at 369.398 kb on - strand at 369.398 kb on - strand at 369.398 kb on - strand at 369.471 kb on + strand, within DZA65_RS01700 at 369.471 kb on + strand, within DZA65_RS01700 at 369.471 kb on + strand, within DZA65_RS01700 at 369.471 kb on + strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.532 kb on - strand, within DZA65_RS01700 at 369.578 kb on + strand, within DZA65_RS01700 at 369.578 kb on + strand, within DZA65_RS01700 at 369.579 kb on - strand, within DZA65_RS01700 at 369.579 kb on - strand, within DZA65_RS01700 at 369.579 kb on - strand, within DZA65_RS01700 at 369.579 kb on - strand, within DZA65_RS01700 at 369.618 kb on + strand, within DZA65_RS01700 at 369.618 kb on + strand, within DZA65_RS01700 at 369.618 kb on + strand, within DZA65_RS01700 at 369.619 kb on - strand, within DZA65_RS01700 at 369.619 kb on - strand, within DZA65_RS01700 at 369.619 kb on - strand, within DZA65_RS01700 at 369.654 kb on + strand, within DZA65_RS01700 at 369.654 kb on + strand, within DZA65_RS01700 at 369.654 kb on + strand, within DZA65_RS01700 at 369.655 kb on - strand, within DZA65_RS01700 at 369.655 kb on - strand at 369.848 kb on + strand, within DZA65_RS01700 at 369.848 kb on + strand, within DZA65_RS01700 at 369.848 kb on + strand, within DZA65_RS01700 at 369.849 kb on - strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.895 kb on - strand, within DZA65_RS01700 at 369.895 kb on - strand, within DZA65_RS01700 at 369.895 kb on - strand, within DZA65_RS01700 at 369.942 kb on + strand, within DZA65_RS01700 at 369.942 kb on + strand, within DZA65_RS01700 at 369.942 kb on + strand, within DZA65_RS01700 at 369.942 kb on + strand, within DZA65_RS01700 at 369.943 kb on - strand, within DZA65_RS01700 at 369.943 kb on - strand, within DZA65_RS01700 at 369.995 kb on - strand, within DZA65_RS01700 at 370.024 kb on - strand, within DZA65_RS01700 at 370.024 kb on - strand, within DZA65_RS01700 at 370.024 kb on - strand, within DZA65_RS01700 at 370.024 kb on - strand, within DZA65_RS01700 at 370.057 kb on + strand, within DZA65_RS01700 at 370.057 kb on + strand, within DZA65_RS01700 at 370.057 kb on + strand, within DZA65_RS01700 at 370.058 kb on - strand, within DZA65_RS01700 at 370.058 kb on - strand, within DZA65_RS01700 at 370.058 kb on - strand, within DZA65_RS01700 at 370.062 kb on + strand, within DZA65_RS01700 at 370.062 kb on + strand, within DZA65_RS01700 at 370.062 kb on + strand, within DZA65_RS01700 at 370.062 kb on + strand, within DZA65_RS01700 at 370.063 kb on - strand, within DZA65_RS01700 at 370.063 kb on - strand, within DZA65_RS01700 at 370.063 kb on - strand, within DZA65_RS01700 at 370.140 kb on + strand, within DZA65_RS01700 at 370.140 kb on + strand, within DZA65_RS01700 at 370.141 kb on - strand, within DZA65_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 367,456 + DZA65_RS01685 0.61 +0.3 367,496 + DZA65_RS01685 0.66 +2.1 367,496 + DZA65_RS01685 0.66 -1.2 367,496 + DZA65_RS01685 0.66 -0.1 367,497 - DZA65_RS01685 0.66 -0.9 367,497 - DZA65_RS01685 0.66 +0.8 367,542 - DZA65_RS01685 0.71 +0.7 367,618 - DZA65_RS01685 0.80 +0.1 367,618 - DZA65_RS01685 0.80 -3.0 367,669 + DZA65_RS01685 0.85 -1.7 367,669 + DZA65_RS01685 0.85 -0.9 367,669 + DZA65_RS01685 0.85 -2.6 367,670 - DZA65_RS01685 0.86 -2.2 367,670 - DZA65_RS01685 0.86 +0.7 367,670 - DZA65_RS01685 0.86 +0.8 367,670 - DZA65_RS01685 0.86 +0.4 367,670 - DZA65_RS01685 0.86 -0.5 367,670 - DZA65_RS01685 0.86 -1.5 367,670 - DZA65_RS01685 0.86 -2.6 367,670 - DZA65_RS01685 0.86 +1.1 367,794 - -0.5 367,794 - +0.1 368,252 - +1.5 368,321 + -0.7 368,335 + +1.4 368,335 + -0.3 368,336 - +0.1 368,336 - -1.2 368,336 - +1.4 368,341 + -2.0 368,341 + -2.0 368,342 - -1.1 368,342 - -0.3 368,346 + +1.1 368,346 + -0.2 368,347 - +1.1 368,347 - +3.7 368,347 - -1.2 368,347 - -0.5 368,347 - -0.5 368,347 - +1.1 368,347 - +0.3 368,347 - +1.5 368,347 - -1.5 368,347 - -2.0 368,363 + -1.5 368,363 + -0.7 368,372 + +0.1 368,381 + -0.6 368,393 + -1.9 368,393 + +1.8 368,466 + -0.9 368,466 + -0.4 368,467 - +0.4 368,467 - -0.9 368,483 + DZA65_RS01695 0.11 -0.7 368,541 + DZA65_RS01695 0.19 -0.2 368,541 + DZA65_RS01695 0.19 +2.1 368,541 + DZA65_RS01695 0.19 -0.5 368,541 + DZA65_RS01695 0.19 -0.5 368,541 + DZA65_RS01695 0.19 -1.2 368,541 + DZA65_RS01695 0.19 -1.2 368,542 - DZA65_RS01695 0.19 -1.2 368,542 - DZA65_RS01695 0.19 -0.5 368,542 - DZA65_RS01695 0.19 +0.5 368,542 - DZA65_RS01695 0.19 -1.5 368,544 - DZA65_RS01695 0.19 +0.5 368,573 + DZA65_RS01695 0.23 -1.8 368,573 + DZA65_RS01695 0.23 -0.9 368,574 - DZA65_RS01695 0.23 +2.0 368,661 - DZA65_RS01695 0.34 +0.7 368,697 + DZA65_RS01695 0.38 +0.7 368,697 + DZA65_RS01695 0.38 -0.5 368,698 - DZA65_RS01695 0.39 -0.1 368,789 + DZA65_RS01695 0.50 +0.4 368,789 + DZA65_RS01695 0.50 +0.8 368,789 + DZA65_RS01695 0.50 +2.3 368,789 + DZA65_RS01695 0.50 -1.5 368,789 + DZA65_RS01695 0.50 +1.5 368,790 - DZA65_RS01695 0.50 +0.9 368,790 - DZA65_RS01695 0.50 +0.8 368,790 - DZA65_RS01695 0.50 -1.3 368,790 - DZA65_RS01695 0.50 +0.1 368,790 - DZA65_RS01695 0.50 +1.1 368,790 - DZA65_RS01695 0.50 +1.1 368,790 - DZA65_RS01695 0.50 +2.6 368,818 - DZA65_RS01695 0.54 +0.7 368,818 - DZA65_RS01695 0.54 -0.9 369,023 + DZA65_RS01695 0.80 +1.6 369,023 + DZA65_RS01695 0.80 -0.5 369,023 + DZA65_RS01695 0.80 +0.4 369,023 + DZA65_RS01695 0.80 +2.1 369,023 + DZA65_RS01695 0.80 +0.8 369,023 + DZA65_RS01695 0.80 +1.1 369,023 + DZA65_RS01695 0.80 +0.1 369,024 - DZA65_RS01695 0.80 +2.0 369,084 + DZA65_RS01695 0.87 -2.0 369,084 + DZA65_RS01695 0.87 -1.0 369,084 + DZA65_RS01695 0.87 -1.5 369,085 - DZA65_RS01695 0.88 +0.6 369,085 - DZA65_RS01695 0.88 +2.1 369,085 - DZA65_RS01695 0.88 +0.7 369,085 - DZA65_RS01695 0.88 +0.2 369,085 - DZA65_RS01695 0.88 +0.7 369,085 - DZA65_RS01695 0.88 +1.1 369,085 - DZA65_RS01695 0.88 -1.9 369,085 - DZA65_RS01695 0.88 -0.3 369,085 - DZA65_RS01695 0.88 +0.7 369,085 - DZA65_RS01695 0.88 -0.0 369,085 - DZA65_RS01695 0.88 +0.1 369,085 - DZA65_RS01695 0.88 -1.7 369,085 - DZA65_RS01695 0.88 -0.9 369,085 - DZA65_RS01695 0.88 +0.7 369,211 + +0.1 369,211 + -1.5 369,212 - +0.1 369,212 - +0.1 369,212 - +0.1 369,212 - +2.3 369,229 + -0.5 369,230 - -0.0 369,247 - -0.1 369,247 - -0.3 369,250 + -2.0 369,250 + -1.7 369,250 + +2.0 369,250 + -0.5 369,250 + -0.7 369,250 + -3.0 369,251 - -1.5 369,251 - -1.2 369,251 - +2.1 369,251 - -2.3 369,251 - -0.9 369,251 - -0.7 369,251 - +1.3 369,251 - +0.5 369,251 - +0.8 369,253 + +2.9 369,253 + +0.2 369,253 + -1.0 369,253 + -0.0 369,253 + +0.6 369,253 + -3.3 369,254 - -1.9 369,254 - -2.7 369,254 - +0.3 369,254 - -0.2 369,254 - -0.7 369,270 - -1.0 369,289 - +2.4 369,289 - -1.7 369,289 - +1.5 369,289 - -1.9 369,289 - -0.2 369,308 - -0.1 369,308 - -0.5 369,308 - +1.3 369,308 - +0.1 369,345 + +1.0 369,367 + -0.1 369,367 + +2.4 369,367 + +1.1 369,368 - -0.0 369,368 - +0.5 369,368 - +0.1 369,375 + -0.9 369,375 + -0.1 369,376 - +0.9 369,398 - -1.5 369,398 - +0.1 369,398 - -1.1 369,398 - -1.7 369,471 + DZA65_RS01700 0.10 +1.1 369,471 + DZA65_RS01700 0.10 -0.9 369,471 + DZA65_RS01700 0.10 -1.7 369,471 + DZA65_RS01700 0.10 -0.9 369,472 - DZA65_RS01700 0.10 -3.1 369,472 - DZA65_RS01700 0.10 -0.5 369,472 - DZA65_RS01700 0.10 +0.9 369,472 - DZA65_RS01700 0.10 +0.7 369,472 - DZA65_RS01700 0.10 -1.0 369,472 - DZA65_RS01700 0.10 -0.7 369,472 - DZA65_RS01700 0.10 -0.6 369,472 - DZA65_RS01700 0.10 -1.8 369,532 - DZA65_RS01700 0.15 +0.7 369,578 + DZA65_RS01700 0.19 +0.5 369,578 + DZA65_RS01700 0.19 +2.4 369,579 - DZA65_RS01700 0.19 +2.5 369,579 - DZA65_RS01700 0.19 +2.3 369,579 - DZA65_RS01700 0.19 +0.1 369,579 - DZA65_RS01700 0.19 +1.6 369,618 + DZA65_RS01700 0.23 +0.1 369,618 + DZA65_RS01700 0.23 -0.7 369,618 + DZA65_RS01700 0.23 -1.2 369,619 - DZA65_RS01700 0.23 -0.7 369,619 - DZA65_RS01700 0.23 -0.8 369,619 - DZA65_RS01700 0.23 +0.3 369,654 + DZA65_RS01700 0.26 -1.2 369,654 + DZA65_RS01700 0.26 +0.4 369,654 + DZA65_RS01700 0.26 +0.4 369,655 - DZA65_RS01700 0.26 +0.7 369,655 - +0.5 369,848 + DZA65_RS01700 0.43 +0.6 369,848 + DZA65_RS01700 0.43 -0.1 369,848 + DZA65_RS01700 0.43 +0.4 369,849 - DZA65_RS01700 0.43 -0.8 369,894 + DZA65_RS01700 0.47 +0.1 369,894 + DZA65_RS01700 0.47 +0.9 369,894 + DZA65_RS01700 0.47 +2.7 369,894 + DZA65_RS01700 0.47 +0.4 369,894 + DZA65_RS01700 0.47 -0.5 369,894 + DZA65_RS01700 0.47 +0.5 369,894 + DZA65_RS01700 0.47 +0.4 369,895 - DZA65_RS01700 0.47 +0.9 369,895 - DZA65_RS01700 0.47 -1.0 369,895 - DZA65_RS01700 0.47 -1.7 369,942 + DZA65_RS01700 0.51 -0.0 369,942 + DZA65_RS01700 0.51 +0.1 369,942 + DZA65_RS01700 0.51 +0.1 369,942 + DZA65_RS01700 0.51 +0.8 369,943 - DZA65_RS01700 0.51 -1.2 369,943 - DZA65_RS01700 0.51 +1.1 369,995 - DZA65_RS01700 0.55 -0.7 370,024 - DZA65_RS01700 0.58 -0.3 370,024 - DZA65_RS01700 0.58 +0.3 370,024 - DZA65_RS01700 0.58 -0.9 370,024 - DZA65_RS01700 0.58 -1.7 370,057 + DZA65_RS01700 0.61 -0.1 370,057 + DZA65_RS01700 0.61 -0.5 370,057 + DZA65_RS01700 0.61 -0.2 370,058 - DZA65_RS01700 0.61 -1.3 370,058 - DZA65_RS01700 0.61 -0.0 370,058 - DZA65_RS01700 0.61 +1.1 370,062 + DZA65_RS01700 0.61 -0.0 370,062 + DZA65_RS01700 0.61 -1.3 370,062 + DZA65_RS01700 0.61 -1.9 370,062 + DZA65_RS01700 0.61 +1.4 370,063 - DZA65_RS01700 0.61 +0.1 370,063 - DZA65_RS01700 0.61 -0.1 370,063 - DZA65_RS01700 0.61 +1.4 370,140 + DZA65_RS01700 0.68 -1.3 370,140 + DZA65_RS01700 0.68 -1.9 370,141 - DZA65_RS01700 0.68 -1.5
Or see this region's nucleotide sequence