Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01420 and DZA65_RS01425 are separated by 24 nucleotides DZA65_RS01425 and DZA65_RS01430 overlap by 11 nucleotides DZA65_RS01430 and DZA65_RS01435 are separated by 109 nucleotides
DZA65_RS01420: DZA65_RS01420 - rod shape-determining protein MreD, at 312,824 to 313,312
_RS01420
DZA65_RS01425: DZA65_RS01425 - septum formation inhibitor Maf, at 313,337 to 313,930
_RS01425
DZA65_RS01430: DZA65_RS01430 - ribonuclease G, at 313,920 to 315,389
_RS01430
DZA65_RS01435: DZA65_RS01435 - AsmA2 domain-containing protein, at 315,499 to 319,335
_RS01435
Position (kb) 313
314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 313.310 kb on + strand at 313.310 kb on + strand at 313.310 kb on + strand at 313.310 kb on + strand at 313.311 kb on - strand at 313.311 kb on - strand at 313.313 kb on + strand at 313.314 kb on - strand at 313.314 kb on - strand at 313.324 kb on + strand at 313.325 kb on - strand at 313.349 kb on + strand at 313.349 kb on + strand at 313.350 kb on - strand at 313.350 kb on - strand at 313.466 kb on + strand, within DZA65_RS01425 at 313.466 kb on + strand, within DZA65_RS01425 at 313.466 kb on + strand, within DZA65_RS01425 at 313.466 kb on + strand, within DZA65_RS01425 at 313.466 kb on + strand, within DZA65_RS01425 at 313.466 kb on + strand, within DZA65_RS01425 at 313.467 kb on - strand, within DZA65_RS01425 at 313.467 kb on - strand, within DZA65_RS01425 at 313.467 kb on - strand, within DZA65_RS01425 at 313.467 kb on - strand, within DZA65_RS01425 at 313.467 kb on - strand, within DZA65_RS01425 at 313.467 kb on - strand, within DZA65_RS01425 at 313.707 kb on + strand, within DZA65_RS01425 at 313.708 kb on - strand, within DZA65_RS01425 at 313.708 kb on - strand, within DZA65_RS01425 at 313.738 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.745 kb on + strand, within DZA65_RS01425 at 313.746 kb on - strand at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.746 kb on - strand, within DZA65_RS01425 at 313.784 kb on + strand, within DZA65_RS01425 at 313.835 kb on + strand, within DZA65_RS01425 at 313.835 kb on + strand, within DZA65_RS01425 at 313.835 kb on + strand, within DZA65_RS01425 at 313.835 kb on + strand, within DZA65_RS01425 at 313.836 kb on - strand at 313.836 kb on - strand, within DZA65_RS01425 at 313.904 kb on - strand at 313.971 kb on + strand at 314.040 kb on - strand at 314.043 kb on + strand at 314.043 kb on + strand at 314.147 kb on + strand, within DZA65_RS01430 at 314.304 kb on + strand, within DZA65_RS01430 at 314.352 kb on - strand, within DZA65_RS01430 at 314.423 kb on + strand, within DZA65_RS01430 at 314.424 kb on - strand, within DZA65_RS01430 at 314.424 kb on - strand, within DZA65_RS01430 at 314.634 kb on + strand, within DZA65_RS01430 at 314.634 kb on + strand, within DZA65_RS01430 at 314.635 kb on - strand, within DZA65_RS01430 at 314.635 kb on - strand, within DZA65_RS01430 at 314.664 kb on + strand, within DZA65_RS01430 at 314.697 kb on + strand, within DZA65_RS01430 at 314.697 kb on + strand, within DZA65_RS01430 at 314.698 kb on - strand, within DZA65_RS01430 at 315.022 kb on + strand, within DZA65_RS01430 at 315.109 kb on + strand, within DZA65_RS01430 at 315.109 kb on + strand, within DZA65_RS01430 at 315.109 kb on + strand, within DZA65_RS01430 at 315.110 kb on - strand at 315.110 kb on - strand, within DZA65_RS01430 at 315.110 kb on - strand, within DZA65_RS01430 at 315.110 kb on - strand, within DZA65_RS01430 at 315.183 kb on + strand, within DZA65_RS01430 at 315.183 kb on + strand, within DZA65_RS01430 at 315.222 kb on + strand, within DZA65_RS01430 at 315.222 kb on + strand, within DZA65_RS01430 at 315.222 kb on + strand, within DZA65_RS01430 at 315.222 kb on + strand, within DZA65_RS01430 at 315.222 kb on + strand, within DZA65_RS01430 at 315.223 kb on - strand, within DZA65_RS01430 at 315.246 kb on + strand at 315.247 kb on - strand at 315.247 kb on - strand at 315.355 kb on - strand at 315.355 kb on - strand at 315.355 kb on - strand at 315.387 kb on + strand at 315.387 kb on + strand at 315.387 kb on + strand at 315.387 kb on + strand at 315.387 kb on + strand at 315.387 kb on + strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.388 kb on - strand at 315.436 kb on + strand at 315.437 kb on - strand at 315.437 kb on - strand at 315.500 kb on + strand at 315.500 kb on + strand at 315.518 kb on + strand at 315.518 kb on + strand at 315.518 kb on + strand at 315.529 kb on - strand at 315.600 kb on + strand at 315.600 kb on + strand at 315.601 kb on - strand at 315.601 kb on - strand at 315.721 kb on - strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.827 kb on - strand at 315.839 kb on + strand at 315.839 kb on + strand at 315.839 kb on + strand at 315.840 kb on - strand at 315.840 kb on - strand at 316.054 kb on - strand, within DZA65_RS01435 at 316.145 kb on - strand, within DZA65_RS01435 at 316.263 kb on + strand, within DZA65_RS01435 at 316.263 kb on + strand, within DZA65_RS01435 at 316.264 kb on - strand, within DZA65_RS01435 at 316.264 kb on - strand, within DZA65_RS01435 at 316.264 kb on - strand, within DZA65_RS01435 at 316.264 kb on - strand, within DZA65_RS01435 at 316.265 kb on + strand, within DZA65_RS01435 at 316.265 kb on + strand, within DZA65_RS01435 at 316.265 kb on + strand, within DZA65_RS01435 at 316.265 kb on + strand, within DZA65_RS01435 at 316.265 kb on + strand, within DZA65_RS01435 at 316.265 kb on + strand, within DZA65_RS01435 at 316.265 kb on + strand, within DZA65_RS01435 at 316.265 kb on + strand, within DZA65_RS01435 at 316.265 kb on + strand, within DZA65_RS01435 at 316.265 kb on + strand, within DZA65_RS01435 at 316.266 kb on - strand, within DZA65_RS01435 at 316.266 kb on - strand, within DZA65_RS01435 at 316.266 kb on - strand, within DZA65_RS01435 at 316.266 kb on - strand, within DZA65_RS01435 at 316.266 kb on - strand, within DZA65_RS01435 at 316.266 kb on - strand, within DZA65_RS01435 at 316.267 kb on + strand, within DZA65_RS01435 at 316.267 kb on + strand, within DZA65_RS01435 at 316.267 kb on + strand, within DZA65_RS01435 at 316.267 kb on + strand, within DZA65_RS01435 at 316.268 kb on - strand, within DZA65_RS01435 at 316.268 kb on - strand, within DZA65_RS01435 at 316.268 kb on - strand, within DZA65_RS01435 at 316.268 kb on - strand, within DZA65_RS01435
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 313,310 + -1.2 313,310 + +0.9 313,310 + -1.1 313,310 + +0.7 313,311 - +2.4 313,311 - +0.0 313,313 + +0.3 313,314 - +1.7 313,314 - +0.5 313,324 + +1.1 313,325 - -0.2 313,349 + -0.7 313,349 + +0.3 313,350 - -1.1 313,350 - -1.7 313,466 + DZA65_RS01425 0.22 -1.5 313,466 + DZA65_RS01425 0.22 -2.3 313,466 + DZA65_RS01425 0.22 +0.4 313,466 + DZA65_RS01425 0.22 -0.5 313,466 + DZA65_RS01425 0.22 -0.5 313,466 + DZA65_RS01425 0.22 -0.1 313,467 - DZA65_RS01425 0.22 -0.7 313,467 - DZA65_RS01425 0.22 -0.9 313,467 - DZA65_RS01425 0.22 +1.1 313,467 - DZA65_RS01425 0.22 +1.2 313,467 - DZA65_RS01425 0.22 +1.1 313,467 - DZA65_RS01425 0.22 -2.1 313,707 + DZA65_RS01425 0.62 -2.8 313,708 - DZA65_RS01425 0.62 +1.7 313,708 - DZA65_RS01425 0.62 -2.7 313,738 + DZA65_RS01425 0.68 -0.5 313,745 + DZA65_RS01425 0.69 +1.1 313,745 + DZA65_RS01425 0.69 +1.9 313,745 + DZA65_RS01425 0.69 +0.1 313,745 + DZA65_RS01425 0.69 +3.1 313,745 + DZA65_RS01425 0.69 +1.8 313,745 + DZA65_RS01425 0.69 +0.5 313,745 + DZA65_RS01425 0.69 +1.2 313,745 + DZA65_RS01425 0.69 -0.5 313,745 + DZA65_RS01425 0.69 +0.4 313,745 + DZA65_RS01425 0.69 -2.0 313,745 + DZA65_RS01425 0.69 -0.5 313,745 + DZA65_RS01425 0.69 +1.1 313,745 + DZA65_RS01425 0.69 -0.7 313,745 + DZA65_RS01425 0.69 +0.1 313,745 + DZA65_RS01425 0.69 +0.1 313,745 + DZA65_RS01425 0.69 -0.1 313,746 - -2.3 313,746 - DZA65_RS01425 0.69 -1.9 313,746 - DZA65_RS01425 0.69 +0.7 313,746 - DZA65_RS01425 0.69 -1.5 313,746 - DZA65_RS01425 0.69 -1.9 313,746 - DZA65_RS01425 0.69 +1.5 313,746 - DZA65_RS01425 0.69 +1.2 313,746 - DZA65_RS01425 0.69 +1.4 313,746 - DZA65_RS01425 0.69 +0.8 313,746 - DZA65_RS01425 0.69 -1.2 313,746 - DZA65_RS01425 0.69 -1.2 313,746 - DZA65_RS01425 0.69 +0.1 313,746 - DZA65_RS01425 0.69 -0.5 313,746 - DZA65_RS01425 0.69 -0.6 313,784 + DZA65_RS01425 0.75 +0.1 313,835 + DZA65_RS01425 0.84 +0.1 313,835 + DZA65_RS01425 0.84 -2.5 313,835 + DZA65_RS01425 0.84 +0.6 313,835 + DZA65_RS01425 0.84 -1.9 313,836 - +0.6 313,836 - DZA65_RS01425 0.84 -0.7 313,904 - +2.0 313,971 + -0.5 314,040 - +0.7 314,043 + +2.3 314,043 + +1.9 314,147 + DZA65_RS01430 0.15 -0.0 314,304 + DZA65_RS01430 0.26 +0.1 314,352 - DZA65_RS01430 0.29 +0.1 314,423 + DZA65_RS01430 0.34 -0.9 314,424 - DZA65_RS01430 0.34 -1.7 314,424 - DZA65_RS01430 0.34 +1.3 314,634 + DZA65_RS01430 0.49 -1.9 314,634 + DZA65_RS01430 0.49 +1.1 314,635 - DZA65_RS01430 0.49 -0.0 314,635 - DZA65_RS01430 0.49 -0.9 314,664 + DZA65_RS01430 0.51 -0.5 314,697 + DZA65_RS01430 0.53 +1.1 314,697 + DZA65_RS01430 0.53 -0.5 314,698 - DZA65_RS01430 0.53 -1.9 315,022 + DZA65_RS01430 0.75 -0.5 315,109 + DZA65_RS01430 0.81 +2.6 315,109 + DZA65_RS01430 0.81 -1.2 315,109 + DZA65_RS01430 0.81 +1.1 315,110 - -0.1 315,110 - DZA65_RS01430 0.81 +1.3 315,110 - DZA65_RS01430 0.81 +1.1 315,110 - DZA65_RS01430 0.81 -0.9 315,183 + DZA65_RS01430 0.86 -0.9 315,183 + DZA65_RS01430 0.86 -2.2 315,222 + DZA65_RS01430 0.89 +1.1 315,222 + DZA65_RS01430 0.89 -1.9 315,222 + DZA65_RS01430 0.89 -0.9 315,222 + DZA65_RS01430 0.89 -0.5 315,222 + DZA65_RS01430 0.89 +1.1 315,223 - DZA65_RS01430 0.89 -1.5 315,246 + -0.9 315,247 - -0.1 315,247 - -0.2 315,355 - -0.1 315,355 - +1.3 315,355 - -0.2 315,387 + -1.5 315,387 + +1.9 315,387 + +2.1 315,387 + +0.7 315,387 + -1.0 315,387 + -2.5 315,388 - -1.9 315,388 - -2.0 315,388 - +0.8 315,388 - -2.2 315,388 - -0.3 315,388 - +0.6 315,388 - -0.9 315,388 - -2.3 315,388 - -1.5 315,388 - +2.3 315,388 - -2.0 315,388 - -0.5 315,388 - -0.9 315,388 - +1.1 315,436 + +1.0 315,437 - -1.4 315,437 - +1.1 315,500 + -2.9 315,500 + -1.5 315,518 + -0.5 315,518 + -0.9 315,518 + +1.4 315,529 - +1.1 315,600 + -0.1 315,600 + +1.1 315,601 - +1.1 315,601 - +0.8 315,721 - -0.7 315,756 + +0.1 315,756 + -0.2 315,756 + -2.0 315,827 - -1.7 315,839 + -0.4 315,839 + -2.2 315,839 + -0.5 315,840 - -1.5 315,840 - -1.2 316,054 - DZA65_RS01435 0.14 -1.0 316,145 - DZA65_RS01435 0.17 -0.1 316,263 + DZA65_RS01435 0.20 -1.8 316,263 + DZA65_RS01435 0.20 +0.1 316,264 - DZA65_RS01435 0.20 +0.1 316,264 - DZA65_RS01435 0.20 -1.5 316,264 - DZA65_RS01435 0.20 -1.2 316,264 - DZA65_RS01435 0.20 +0.1 316,265 + DZA65_RS01435 0.20 +0.7 316,265 + DZA65_RS01435 0.20 +0.1 316,265 + DZA65_RS01435 0.20 +0.1 316,265 + DZA65_RS01435 0.20 +0.5 316,265 + DZA65_RS01435 0.20 -0.9 316,265 + DZA65_RS01435 0.20 -0.9 316,265 + DZA65_RS01435 0.20 -1.2 316,265 + DZA65_RS01435 0.20 -0.3 316,265 + DZA65_RS01435 0.20 +0.7 316,265 + DZA65_RS01435 0.20 -0.5 316,266 - DZA65_RS01435 0.20 -1.5 316,266 - DZA65_RS01435 0.20 -1.3 316,266 - DZA65_RS01435 0.20 -1.2 316,266 - DZA65_RS01435 0.20 -0.1 316,266 - DZA65_RS01435 0.20 -1.5 316,266 - DZA65_RS01435 0.20 +1.4 316,267 + DZA65_RS01435 0.20 -1.5 316,267 + DZA65_RS01435 0.20 -1.2 316,267 + DZA65_RS01435 0.20 +1.1 316,267 + DZA65_RS01435 0.20 -0.5 316,268 - DZA65_RS01435 0.20 -1.8 316,268 - DZA65_RS01435 0.20 -0.5 316,268 - DZA65_RS01435 0.20 -0.5 316,268 - DZA65_RS01435 0.20 -0.8
Or see this region's nucleotide sequence