Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00560 and DZA65_RS00565 are separated by 157 nucleotides DZA65_RS00565 and DZA65_RS00570 are separated by 182 nucleotides
DZA65_RS00560: DZA65_RS00560 - hypothetical protein, at 128,600 to 130,171
_RS00560
DZA65_RS00565: DZA65_RS00565 - hypothetical protein, at 130,329 to 131,759
_RS00565
DZA65_RS00570: DZA65_RS00570 - IS3 family transposase, at 131,942 to 133,050
_RS00570
Position (kb) 130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 129.368 kb on - strand, within DZA65_RS00560 at 129.414 kb on + strand, within DZA65_RS00560 at 129.415 kb on - strand, within DZA65_RS00560 at 129.525 kb on + strand, within DZA65_RS00560 at 129.610 kb on + strand, within DZA65_RS00560 at 129.746 kb on - strand, within DZA65_RS00560 at 129.799 kb on - strand, within DZA65_RS00560 at 129.856 kb on - strand, within DZA65_RS00560 at 129.859 kb on - strand, within DZA65_RS00560 at 129.921 kb on - strand, within DZA65_RS00560 at 129.929 kb on + strand, within DZA65_RS00560 at 129.962 kb on - strand, within DZA65_RS00560 at 130.005 kb on - strand, within DZA65_RS00560 at 130.009 kb on - strand, within DZA65_RS00560 at 130.009 kb on - strand, within DZA65_RS00560 at 130.009 kb on - strand, within DZA65_RS00560 at 130.012 kb on + strand, within DZA65_RS00560 at 130.036 kb on + strand at 130.036 kb on + strand at 130.037 kb on - strand at 130.055 kb on - strand at 130.065 kb on + strand at 130.065 kb on + strand at 130.066 kb on - strand at 130.138 kb on - strand at 130.138 kb on - strand at 130.181 kb on + strand at 130.182 kb on - strand at 130.211 kb on - strand at 130.211 kb on - strand at 130.238 kb on + strand at 130.239 kb on - strand at 130.239 kb on - strand at 130.239 kb on - strand at 130.270 kb on + strand at 130.329 kb on - strand at 130.343 kb on - strand at 130.358 kb on + strand at 130.368 kb on - strand at 130.369 kb on + strand at 130.369 kb on + strand at 130.528 kb on + strand, within DZA65_RS00565 at 130.603 kb on + strand, within DZA65_RS00565 at 130.603 kb on + strand, within DZA65_RS00565 at 130.769 kb on + strand, within DZA65_RS00565 at 130.792 kb on + strand, within DZA65_RS00565 at 130.793 kb on - strand, within DZA65_RS00565 at 130.796 kb on - strand, within DZA65_RS00565 at 130.880 kb on + strand, within DZA65_RS00565 at 130.880 kb on + strand, within DZA65_RS00565 at 130.938 kb on - strand, within DZA65_RS00565 at 131.038 kb on + strand, within DZA65_RS00565 at 131.039 kb on - strand, within DZA65_RS00565 at 131.148 kb on - strand, within DZA65_RS00565 at 131.151 kb on + strand, within DZA65_RS00565 at 131.184 kb on - strand, within DZA65_RS00565 at 131.456 kb on - strand, within DZA65_RS00565 at 131.497 kb on - strand, within DZA65_RS00565 at 131.581 kb on + strand, within DZA65_RS00565 at 131.582 kb on - strand, within DZA65_RS00565 at 131.593 kb on + strand, within DZA65_RS00565 at 131.598 kb on - strand, within DZA65_RS00565 at 131.668 kb on + strand at 131.668 kb on + strand at 131.865 kb on + strand at 131.865 kb on + strand at 131.869 kb on + strand at 131.872 kb on + strand at 131.873 kb on - strand at 131.928 kb on - strand at 131.989 kb on - strand at 132.481 kb on + strand, within DZA65_RS00570 at 132.485 kb on + strand, within DZA65_RS00570 at 132.485 kb on + strand, within DZA65_RS00570
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 129,368 - DZA65_RS00560 0.49 +0.1 129,414 + DZA65_RS00560 0.52 -1.0 129,415 - DZA65_RS00560 0.52 +1.2 129,525 + DZA65_RS00560 0.59 +0.2 129,610 + DZA65_RS00560 0.64 +1.6 129,746 - DZA65_RS00560 0.73 -0.8 129,799 - DZA65_RS00560 0.76 +1.2 129,856 - DZA65_RS00560 0.80 +0.1 129,859 - DZA65_RS00560 0.80 +0.4 129,921 - DZA65_RS00560 0.84 -0.4 129,929 + DZA65_RS00560 0.85 +0.4 129,962 - DZA65_RS00560 0.87 +1.6 130,005 - DZA65_RS00560 0.89 -0.8 130,009 - DZA65_RS00560 0.90 -2.7 130,009 - DZA65_RS00560 0.90 -0.9 130,009 - DZA65_RS00560 0.90 -2.4 130,012 + DZA65_RS00560 0.90 -0.8 130,036 + +0.5 130,036 + -3.3 130,037 - -0.4 130,055 - +0.2 130,065 + +0.4 130,065 + -0.4 130,066 - +1.6 130,138 - +1.2 130,138 - -0.4 130,181 + +1.4 130,182 - -2.5 130,211 - +0.1 130,211 - +1.3 130,238 + -0.4 130,239 - +0.1 130,239 - +0.2 130,239 - -1.1 130,270 + -0.8 130,329 - -1.9 130,343 - -1.1 130,358 + -0.6 130,368 - +0.1 130,369 + +0.2 130,369 + -0.4 130,528 + DZA65_RS00565 0.14 +3.1 130,603 + DZA65_RS00565 0.19 -2.3 130,603 + DZA65_RS00565 0.19 -0.1 130,769 + DZA65_RS00565 0.31 +2.6 130,792 + DZA65_RS00565 0.32 -1.6 130,793 - DZA65_RS00565 0.32 +1.2 130,796 - DZA65_RS00565 0.33 -1.7 130,880 + DZA65_RS00565 0.39 +1.3 130,880 + DZA65_RS00565 0.39 -0.4 130,938 - DZA65_RS00565 0.43 -2.1 131,038 + DZA65_RS00565 0.50 +1.3 131,039 - DZA65_RS00565 0.50 -0.1 131,148 - DZA65_RS00565 0.57 +0.3 131,151 + DZA65_RS00565 0.57 -1.4 131,184 - DZA65_RS00565 0.60 +0.8 131,456 - DZA65_RS00565 0.79 -1.0 131,497 - DZA65_RS00565 0.82 -0.0 131,581 + DZA65_RS00565 0.87 -2.3 131,582 - DZA65_RS00565 0.88 +1.0 131,593 + DZA65_RS00565 0.88 +1.2 131,598 - DZA65_RS00565 0.89 +2.4 131,668 + +0.8 131,668 + +0.8 131,865 + -0.6 131,865 + -0.4 131,869 + -1.4 131,872 + +3.0 131,873 - -1.1 131,928 - +2.4 131,989 - +0.3 132,481 + DZA65_RS00570 0.49 -2.3 132,485 + DZA65_RS00570 0.49 +0.6 132,485 + DZA65_RS00570 0.49 +0.2
Or see this region's nucleotide sequence