Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22315

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Stem-Atlantic
				remove
4,826,015	-	DZA65_RS22310	0.35	-1.4
4,826,015	-	DZA65_RS22310	0.35	-2.4
4,826,016	+	DZA65_RS22310	0.35	+1.7
4,826,016	+	DZA65_RS22310	0.35	-0.4
4,826,016	+	DZA65_RS22310	0.35	-1.4
4,826,016	+	DZA65_RS22310	0.35	+1.2
4,826,016	+	DZA65_RS22310	0.35	+0.6
4,826,017	-	DZA65_RS22310	0.35	-1.4
4,826,017	-	DZA65_RS22310	0.35	-0.0
4,826,017	-	DZA65_RS22310	0.35	+1.2
4,826,050	+	DZA65_RS22310	0.37	-0.2
4,826,069	-	DZA65_RS22310	0.38	-0.0
4,826,069	-	DZA65_RS22310	0.38	-0.8
4,826,069	-	DZA65_RS22310	0.38	-1.9
4,826,134	+	DZA65_RS22310	0.42	+0.2
4,826,183	+	DZA65_RS22310	0.46	-0.4
4,826,184	-	DZA65_RS22310	0.46	+0.8
4,826,184	-	DZA65_RS22310	0.46	+0.8
4,826,271	+	DZA65_RS22310	0.51	-0.8
4,826,271	+	DZA65_RS22310	0.51	+0.0
4,826,272	-	DZA65_RS22310	0.52	-0.5
4,826,287	+	DZA65_RS22310	0.53	+1.2
4,826,287	+	DZA65_RS22310	0.53	-2.4
4,826,288	-	DZA65_RS22310	0.53	-0.2
4,826,288	-	DZA65_RS22310	0.53	-0.1
4,826,419	+	DZA65_RS22310	0.61	-0.4
4,826,419	+	DZA65_RS22310	0.61	-0.1
4,826,419	+	DZA65_RS22310	0.61	-1.4
4,826,419	+	DZA65_RS22310	0.61	-0.5
4,826,419	+	DZA65_RS22310	0.61	+1.2
4,826,419	+	DZA65_RS22310	0.61	+0.2
4,826,420	-	DZA65_RS22310	0.61	+0.4
4,826,420	-	DZA65_RS22310	0.61	+0.2
4,826,420	-	DZA65_RS22310	0.61	-0.8
4,826,420	-	DZA65_RS22310	0.61	+0.8
4,826,420	-			-1.4
4,826,420	-	DZA65_RS22310	0.61	-0.7
4,826,420	-	DZA65_RS22310	0.61	-1.8
4,826,420	-	DZA65_RS22310	0.61	-0.8
4,826,420	-	DZA65_RS22310	0.61	+0.2
4,826,420	-	DZA65_RS22310	0.61	+1.6
4,826,421	+	DZA65_RS22310	0.61	+0.9
4,826,421	+	DZA65_RS22310	0.61	-1.7
4,826,421	+	DZA65_RS22310	0.61	-0.0
4,826,421	+	DZA65_RS22310	0.61	-2.0
4,826,421	+	DZA65_RS22310	0.61	+2.8
4,826,421	+	DZA65_RS22310	0.61	-1.1
4,826,421	+	DZA65_RS22310	0.61	+0.1
4,826,421	+	DZA65_RS22310	0.61	-0.8
4,826,421	+	DZA65_RS22310	0.61	+0.6
4,826,421	+	DZA65_RS22310	0.61	-1.4
4,826,421	+	DZA65_RS22310	0.61	-0.5
4,826,421	+	DZA65_RS22310	0.61	-1.8
4,826,421	+	DZA65_RS22310	0.61	-0.5
4,826,421	+	DZA65_RS22310	0.61	-0.9
4,826,421	+	DZA65_RS22310	0.61	-0.4
4,826,421	+	DZA65_RS22310	0.61	+2.2
4,826,421	+	DZA65_RS22310	0.61	-1.1
4,826,421	+	DZA65_RS22310	0.61	+0.2
4,826,421	+	DZA65_RS22310	0.61	-0.2
4,826,421	+	DZA65_RS22310	0.61	+0.3
4,826,421	+	DZA65_RS22310	0.61	+0.5
4,826,421	+	DZA65_RS22310	0.61	+1.5
4,826,421	+	DZA65_RS22310	0.61	+0.3
4,826,421	+	DZA65_RS22310	0.61	-0.3
4,826,421	+	DZA65_RS22310	0.61	-0.0
4,826,422	-	DZA65_RS22310	0.61	+0.0
4,826,422	-	DZA65_RS22310	0.61	-0.6
4,826,422	-	DZA65_RS22310	0.61	-0.0
4,826,422	-	DZA65_RS22310	0.61	-0.5
4,826,422	-	DZA65_RS22310	0.61	-1.2
4,826,422	-	DZA65_RS22310	0.61	-2.1
4,826,422	-	DZA65_RS22310	0.61	-1.6
4,826,422	-	DZA65_RS22310	0.61	+0.1
4,826,422	-	DZA65_RS22310	0.61	-0.4
4,826,422	-	DZA65_RS22310	0.61	-2.2
4,826,422	-	DZA65_RS22310	0.61	-0.4
4,826,422	-	DZA65_RS22310	0.61	+0.2
4,826,422	-	DZA65_RS22310	0.61	-0.0
4,826,422	-	DZA65_RS22310	0.61	+0.8
4,826,422	-	DZA65_RS22310	0.61	-0.8
4,826,422	-	DZA65_RS22310	0.61	-0.2
4,826,422	-	DZA65_RS22310	0.61	-0.1
4,826,422	-	DZA65_RS22310	0.61	-0.1
4,826,422	-	DZA65_RS22310	0.61	+0.6
4,826,455	+	DZA65_RS22310	0.64	-1.1
4,826,610	+	DZA65_RS22310	0.74	+0.2
4,826,652	+	DZA65_RS22310	0.77	+0.2
4,826,652	+	DZA65_RS22310	0.77	-0.4
4,826,652	+	DZA65_RS22310	0.77	-0.0
4,826,652	+	DZA65_RS22310	0.77	-1.9
4,826,652	+	DZA65_RS22310	0.77	+0.3
4,826,652	+	DZA65_RS22310	0.77	+0.2
4,826,652	+	DZA65_RS22310	0.77	-1.1
4,826,653	-	DZA65_RS22310	0.77	-0.8
4,826,653	-	DZA65_RS22310	0.77	-0.7
4,826,653	-	DZA65_RS22310	0.77	+1.1
4,826,653	-	DZA65_RS22310	0.77	+0.7
4,826,653	-	DZA65_RS22310	0.77	-2.4
4,826,689	+	DZA65_RS22310	0.79	-0.1
4,826,690	-	DZA65_RS22310	0.79	-3.1
4,826,690	-	DZA65_RS22310	0.79	+0.6
4,826,690	-	DZA65_RS22310	0.79	+0.6
4,826,711	-	DZA65_RS22310	0.80	-1.7
4,826,759	-	DZA65_RS22310	0.84	-0.3
4,826,847	+	DZA65_RS22310	0.89	-1.0
4,826,861	+			-0.8
4,826,861	+			+2.8
4,826,861	+			-0.5
4,826,861	+			+1.9
4,826,861	+			+0.2
4,826,862	-			-0.4
4,826,862	-			+0.9
4,826,862	-			+0.2
4,826,925	+			-1.1
4,826,996	+			+3.5
4,826,996	+			-2.4
4,826,997	-			-1.1
4,826,997	-			-0.9
4,826,997	-			-1.6
4,827,012	-			-0.9
4,827,012	-			-0.2
4,827,052	+			+0.3
4,827,052	+			+0.4
4,827,077	+	DZA65_RS22315	0.15	+0.5
4,827,078	-			+0.9
4,827,127	+			+0.2
4,827,127	+	DZA65_RS22315	0.27	+0.2
4,827,127	+	DZA65_RS22315	0.27	+1.2
4,827,127	+	DZA65_RS22315	0.27	+0.2
4,827,127	+	DZA65_RS22315	0.27	-0.4
4,827,127	+	DZA65_RS22315	0.27	+0.2
4,827,127	+	DZA65_RS22315	0.27	+0.8
4,827,127	+	DZA65_RS22315	0.27	+0.2
4,827,127	+	DZA65_RS22315	0.27	+1.0
4,827,128	-	DZA65_RS22315	0.27	-2.1
4,827,128	-	DZA65_RS22315	0.27	-1.8
4,827,128	-	DZA65_RS22315	0.27	+0.2
4,827,128	-	DZA65_RS22315	0.27	+0.7
4,827,128	-	DZA65_RS22315	0.27	+1.2
4,827,128	-	DZA65_RS22315	0.27	-0.4
4,827,128	-	DZA65_RS22315	0.27	-0.9
4,827,128	-	DZA65_RS22315	0.27	+0.7
4,827,128	-	DZA65_RS22315	0.27	+0.5
4,827,140	+	DZA65_RS22315	0.30	+1.0
4,827,140	+	DZA65_RS22315	0.30	+0.5
4,827,140	+	DZA65_RS22315	0.30	-0.5
4,827,140	+	DZA65_RS22315	0.30	-0.7
4,827,140	+	DZA65_RS22315	0.30	-0.8
4,827,140	+	DZA65_RS22315	0.30	-0.4
4,827,141	-	DZA65_RS22315	0.30	-0.2
4,827,141	-	DZA65_RS22315	0.30	-0.6
4,827,141	-	DZA65_RS22315	0.30	+1.5
4,827,141	-	DZA65_RS22315	0.30	-0.4
4,827,141	-	DZA65_RS22315	0.30	+1.1
4,827,141	-	DZA65_RS22315	0.30	+0.7
4,827,141	-	DZA65_RS22315	0.30	+0.5
4,827,141	-	DZA65_RS22315	0.30	+0.4
4,827,141	-	DZA65_RS22315	0.30	-1.2
4,827,143	+	DZA65_RS22315	0.30	-1.4
4,827,143	+	DZA65_RS22315	0.30	-0.0
4,827,143	+	DZA65_RS22315	0.30	-0.8
4,827,143	+	DZA65_RS22315	0.30	+1.4
4,827,143	+	DZA65_RS22315	0.30	-0.2
4,827,143	+	DZA65_RS22315	0.30	+1.2
4,827,143	+	DZA65_RS22315	0.30	+0.7
4,827,143	+			-0.8
4,827,144	-	DZA65_RS22315	0.31	+2.2
4,827,144	-	DZA65_RS22315	0.31	-0.1
4,827,144	-	DZA65_RS22315	0.31	-0.1
4,827,144	-	DZA65_RS22315	0.31	+1.2
4,827,171	+	DZA65_RS22315	0.37	-2.2
4,827,171	+	DZA65_RS22315	0.37	+0.9
4,827,171	+	DZA65_RS22315	0.37	+0.3
4,827,171	+	DZA65_RS22315	0.37	-1.1
4,827,172	-	DZA65_RS22315	0.37	+2.2
4,827,184	-	DZA65_RS22315	0.40	+0.2
4,827,203	+	DZA65_RS22315	0.45	+0.6
4,827,204	-	DZA65_RS22315	0.45	+1.1
4,827,204	-	DZA65_RS22315	0.45	-0.0
4,827,204	-	DZA65_RS22315	0.45	+0.7
4,827,204	-	DZA65_RS22315	0.45	+1.5
4,827,204	-	DZA65_RS22315	0.45	+1.6
4,827,296	+	DZA65_RS22315	0.67	-1.4
4,827,296	+	DZA65_RS22315	0.67	-1.6
4,827,297	-	DZA65_RS22315	0.67	+0.4
4,827,297	-	DZA65_RS22315	0.67	+1.2
4,827,374	+	DZA65_RS22315	0.85	-0.1
4,827,374	+	DZA65_RS22315	0.85	+0.9
4,827,374	+	DZA65_RS22315	0.85	+0.3
4,827,374	+	DZA65_RS22315	0.85	-0.0
4,827,375	-	DZA65_RS22315	0.86	-0.5
4,827,375	-	DZA65_RS22315	0.86	+0.4
4,827,405	-			+0.4
4,827,413	+			-0.3
4,827,414	-			-1.1
4,827,414	-			-0.1
4,827,417	+			+0.6
4,827,417	+			-0.1
4,827,417	+			+0.3
4,827,417	+			+0.6
4,827,417	+			-0.4
4,827,417	+			+2.2
4,827,417	+			+0.1
4,827,417	+			-0.1
4,827,417	+			-0.8
4,827,417	+			-0.7
4,827,417	+			+1.2
4,827,418	-			+0.2
4,827,418	-			-0.0
4,827,418	-			+0.8
4,827,418	-			-0.1
4,827,418	-			+1.7
4,827,418	-			-0.5
4,827,418	-			+0.9
4,827,418	-			+1.3
4,827,418	-			+0.5
4,827,418	-			+0.5
4,827,418	-			+1.0
4,827,418	-			-1.8
4,827,439	-			-0.0
4,827,439	-			+1.0
4,827,439	-			+1.0
4,827,442	+			-0.4
4,827,442	+			-0.1
4,827,443	-			+1.2
4,827,443	-			+0.4
4,827,443	-			+0.3
4,827,443	-			+0.9
4,827,470	-			+1.2
4,827,470	-			+1.2
4,827,470	-			-0.9
4,827,480	+			-0.7
4,827,508	+			+0.2
4,827,564	-			-1.8
4,827,568	+			-0.2
4,827,568	+			+0.2
4,827,576	+			-1.2
4,827,577	-			+1.1
4,827,643	+			-1.9
4,827,643	+			-0.1
4,827,643	+			-0.0
4,827,643	+			-1.8
4,827,643	+			+0.2
4,827,644	-			+0.2
4,827,689	+	DZA65_RS22320	0.12	+0.7
4,827,689	+	DZA65_RS22320	0.12	-0.9
4,827,689	+	DZA65_RS22320	0.12	+0.2
4,827,689	+	DZA65_RS22320	0.12	+1.2
4,827,690	-	DZA65_RS22320	0.12	-0.1
4,827,690	-	DZA65_RS22320	0.12	+0.1
4,827,690	-	DZA65_RS22320	0.12	+0.8
4,827,713	+	DZA65_RS22320	0.17	+0.9
4,827,713	+	DZA65_RS22320	0.17	+0.5
4,827,714	-	DZA65_RS22320	0.18	+1.5
4,827,714	-	DZA65_RS22320	0.18	-1.4
4,827,714	-	DZA65_RS22320	0.18	+0.8
4,827,721	-	DZA65_RS22320	0.19	+0.0
4,827,774	+	DZA65_RS22320	0.32	-1.1
4,827,774	+	DZA65_RS22320	0.32	-0.7
4,827,775	-	DZA65_RS22320	0.33	+0.8
4,827,775	-	DZA65_RS22320	0.33	-1.6
4,827,808	+	DZA65_RS22320	0.41	+0.9
4,827,808	+	DZA65_RS22320	0.41	-0.8
4,827,809	-	DZA65_RS22320	0.41	+1.6
4,827,809	-	DZA65_RS22320	0.41	-0.1
4,827,809	-	DZA65_RS22320	0.41	+0.1
4,827,836	+	DZA65_RS22320	0.48	+1.2
4,827,836	+	DZA65_RS22320	0.48	+0.2
4,827,836	+	DZA65_RS22320	0.48	-2.2
4,827,836	+	DZA65_RS22320	0.48	+0.4
4,827,836	+	DZA65_RS22320	0.48	-1.8
4,827,836	+	DZA65_RS22320	0.48	-1.5
4,827,836	+	DZA65_RS22320	0.48	+0.8
4,827,836	+	DZA65_RS22320	0.48	+0.6
4,827,836	+	DZA65_RS22320	0.48	+0.4
4,827,837	-	DZA65_RS22320	0.48	-1.5
4,827,837	-	DZA65_RS22320	0.48	-0.0
4,827,837	-	DZA65_RS22320	0.48	-1.8
4,827,837	-	DZA65_RS22320	0.48	+1.5
4,827,837	-	DZA65_RS22320	0.48	+2.8
4,827,837	-	DZA65_RS22320	0.48	+0.3
4,827,837	-	DZA65_RS22320	0.48	-0.9
4,827,837	-	DZA65_RS22320	0.48	-0.5
4,827,837	-	DZA65_RS22320	0.48	+0.1
4,827,837	-	DZA65_RS22320	0.48	+1.5
4,827,840	-	DZA65_RS22320	0.49	+0.2
4,827,840	-	DZA65_RS22320	0.49	+1.2
4,827,872	+	DZA65_RS22320	0.56	-0.3
4,827,872	+	DZA65_RS22320	0.56	-1.2
4,827,873	-	DZA65_RS22320	0.57	+0.7
4,827,873	-	DZA65_RS22320	0.57	-0.1
4,827,929	+	DZA65_RS22320	0.70	-2.1
4,827,930	-	DZA65_RS22320	0.71	+0.1
4,827,994	+	DZA65_RS22320	0.86	-0.9
4,827,994	+	DZA65_RS22320	0.86	-0.2
4,827,995	-	DZA65_RS22320	0.87	+1.2
4,827,995	-	DZA65_RS22320	0.87	-0.3
4,827,995	-	DZA65_RS22320	0.87	-0.6
4,828,011	+			-0.4
4,828,011	+			-0.0
4,828,011	+			-1.1
4,828,012	-			+0.2
4,828,032	+			+0.6
4,828,032	+			+0.4
4,828,032	+			+1.0
4,828,032	+			+0.1
4,828,033	-			+1.0
4,828,033	-			-0.4
4,828,033	-			+0.9
4,828,033	-			-0.0
4,828,033	-			-0.4
4,828,033	-			+0.9
4,828,033	-			+1.0
4,828,033	-			+2.0
4,828,067	+			-0.8
4,828,067	+			-0.7
4,828,067	+			+0.5
4,828,067	+			-1.1
4,828,067	+			-0.8
4,828,067	+			-1.6
4,828,067	+			+0.6
4,828,067	+			-1.4
4,828,067	+			-1.1
4,828,067	+			+1.1
4,828,067	+			-0.5
4,828,067	+			+0.2
4,828,067	+			-0.4
4,828,067	+			+2.5
4,828,067	+			+0.8
4,828,068	-			+2.8
4,828,068	-			-0.4
4,828,068	-			+1.2
4,828,068	-			-1.3
4,828,068	-			-1.8
4,828,068	-			-0.4
4,828,068	-			+1.5
4,828,068	-			+1.9
4,828,068	-			-0.8
4,828,104	+			-0.5
4,828,105	-			+0.3
4,828,105	-			-0.4
4,828,120	+			+0.8
4,828,120	+			-1.1
4,828,131	+			-1.1
4,828,132	-			-1.1
4,828,132	-			-1.7
4,828,154	+			+0.5
4,828,154	+			+0.6
4,828,154	+			+0.1
4,828,155	-			+0.3
4,828,155	-			+0.2
4,828,159	-			+0.7
4,828,200	+			-0.1
4,828,200	+			-0.4
4,828,200	+			-0.7
4,828,201	-			-0.9
4,828,201	-			-0.8
4,828,201	-			-0.1
4,828,219	+			+0.2
4,828,219	+			-0.4
4,828,219	+			+0.8
4,828,219	+			-1.1
4,828,219	+			+0.2
4,828,219	+			+1.6
4,828,220	-			-0.0
4,828,220	-			-0.9
4,828,220	-			+0.7
4,828,220	-			+0.8
4,828,220	-			-0.2
4,828,220	-			+0.5
4,828,224	+			+1.8
4,828,224	+			+0.9
4,828,224	+			-0.8
4,828,224	+			+0.2
4,828,224	+			+0.8
4,828,224	+			+1.2
4,828,224	+			+0.1
4,828,224	+			-0.4
4,828,224	+			-0.8
4,828,224	+			-2.2
4,828,224	+			-0.3
4,828,224	+			+0.7
4,828,224	+			-1.4
4,828,224	+			+0.5
4,828,224	+			+1.7
4,828,225	-			+0.9
4,828,225	-			-1.6
4,828,225	-			+1.8
4,828,225	-			+0.9
4,828,225	-			+0.1
4,828,225	-			-0.4
4,828,225	-			-1.3
4,828,225	-			+1.2
4,828,225	-			-0.0
4,828,225	-			+0.9
4,828,226	+			+0.3
4,828,226	+			-1.5
4,828,226	+			+1.9
4,828,226	+			-0.4
4,828,227	-			+1.0
4,828,227	-			+1.4
4,828,227	-			-0.2
4,828,227	-			+0.4
4,828,262	+			+0.1
4,828,262	+			-2.9
4,828,262	+			+1.2
4,828,262	+			+0.1
4,828,262	+			+1.0
4,828,262	+			+0.8
4,828,262	+			-0.9
4,828,262	+			-1.1
4,828,262	+			-0.8
4,828,263	-			+1.4
4,828,263	-			-0.5
4,828,263	-			-0.4
4,828,263	-			+0.5
4,828,263	-			+1.6
4,828,263	-			-0.4
4,828,263	-			-0.6
4,828,263	-			-0.4
4,828,314	+			+2.0
4,828,314	+			+0.4
4,828,315	-			+0.6
4,828,387	+	DZA65_RS22325	0.20	+0.5
4,828,387	+	DZA65_RS22325	0.20	-0.7
4,828,387	+	DZA65_RS22325	0.20	+0.8
4,828,387	+	DZA65_RS22325	0.20	-1.2
4,828,388	-	DZA65_RS22325	0.20	+1.5
4,828,388	-	DZA65_RS22325	0.20	+0.8

Or see this region's nucleotide sequence