Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS22200 and DZA65_RS22205 are separated by 204 nucleotides DZA65_RS22205 and DZA65_RS22210 are separated by 8 nucleotides
DZA65_RS22200: DZA65_RS22200 - glutamate--ammonia ligase, at 4,801,573 to 4,802,982
_RS22200
DZA65_RS22205: DZA65_RS22205 - nitrogen regulation protein NR(II), at 4,803,187 to 4,804,236
_RS22205
DZA65_RS22210: DZA65_RS22210 - nitrogen regulation protein NR(I), at 4,804,245 to 4,805,657
_RS22210
Position (kb) 4803
4804
4805 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4802.287 kb on + strand, within DZA65_RS22200 at 4802.980 kb on + strand at 4802.980 kb on + strand at 4802.980 kb on + strand at 4802.980 kb on + strand at 4802.980 kb on + strand at 4802.980 kb on + strand at 4802.980 kb on + strand at 4802.981 kb on - strand at 4802.981 kb on - strand at 4802.981 kb on - strand at 4802.981 kb on - strand at 4802.981 kb on - strand at 4802.983 kb on + strand at 4803.023 kb on + strand at 4803.023 kb on + strand at 4803.024 kb on - strand at 4803.024 kb on - strand at 4803.051 kb on + strand at 4803.052 kb on - strand at 4803.052 kb on - strand at 4803.052 kb on - strand at 4803.052 kb on - strand at 4803.057 kb on + strand at 4803.058 kb on - strand at 4803.058 kb on - strand at 4803.123 kb on + strand at 4803.123 kb on + strand at 4803.123 kb on + strand at 4803.123 kb on + strand at 4803.123 kb on + strand at 4803.123 kb on + strand at 4803.123 kb on + strand at 4803.123 kb on + strand at 4803.124 kb on - strand at 4803.124 kb on - strand at 4803.124 kb on - strand at 4803.124 kb on - strand at 4803.124 kb on - strand at 4803.124 kb on - strand at 4803.124 kb on - strand at 4803.124 kb on - strand at 4803.124 kb on - strand at 4803.132 kb on + strand at 4803.132 kb on + strand at 4803.132 kb on + strand at 4803.133 kb on - strand at 4803.133 kb on - strand at 4803.136 kb on + strand at 4803.136 kb on + strand at 4803.136 kb on + strand at 4803.136 kb on + strand at 4803.136 kb on + strand at 4803.136 kb on + strand at 4803.136 kb on + strand at 4803.136 kb on + strand at 4803.136 kb on + strand at 4803.136 kb on + strand at 4803.136 kb on + strand at 4803.136 kb on + strand at 4803.137 kb on - strand at 4803.137 kb on - strand at 4803.137 kb on - strand at 4803.137 kb on - strand at 4803.137 kb on - strand at 4803.137 kb on - strand at 4803.141 kb on + strand at 4803.142 kb on - strand at 4803.142 kb on - strand at 4803.142 kb on - strand at 4803.153 kb on + strand at 4803.153 kb on + strand at 4803.156 kb on + strand at 4803.156 kb on + strand at 4803.156 kb on + strand at 4803.157 kb on - strand at 4803.157 kb on - strand at 4803.157 kb on - strand at 4803.157 kb on - strand at 4803.157 kb on - strand at 4803.187 kb on - strand at 4803.277 kb on + strand at 4803.277 kb on + strand at 4803.278 kb on - strand at 4803.429 kb on + strand, within DZA65_RS22205 at 4803.429 kb on + strand, within DZA65_RS22205 at 4803.440 kb on + strand, within DZA65_RS22205 at 4803.440 kb on + strand, within DZA65_RS22205 at 4803.440 kb on + strand, within DZA65_RS22205 at 4803.441 kb on - strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.456 kb on + strand, within DZA65_RS22205 at 4803.457 kb on - strand, within DZA65_RS22205 at 4803.457 kb on - strand, within DZA65_RS22205 at 4803.457 kb on - strand, within DZA65_RS22205 at 4803.457 kb on - strand, within DZA65_RS22205 at 4803.457 kb on - strand, within DZA65_RS22205 at 4803.685 kb on + strand, within DZA65_RS22205 at 4803.685 kb on + strand, within DZA65_RS22205 at 4803.685 kb on + strand, within DZA65_RS22205 at 4803.685 kb on + strand, within DZA65_RS22205 at 4803.685 kb on + strand, within DZA65_RS22205 at 4803.686 kb on - strand, within DZA65_RS22205 at 4803.723 kb on + strand, within DZA65_RS22205 at 4803.723 kb on + strand, within DZA65_RS22205 at 4803.723 kb on + strand, within DZA65_RS22205 at 4803.803 kb on + strand, within DZA65_RS22205 at 4803.804 kb on - strand, within DZA65_RS22205 at 4803.815 kb on + strand, within DZA65_RS22205 at 4803.856 kb on + strand, within DZA65_RS22205 at 4803.899 kb on + strand, within DZA65_RS22205 at 4803.899 kb on + strand, within DZA65_RS22205 at 4803.899 kb on + strand, within DZA65_RS22205 at 4803.899 kb on + strand, within DZA65_RS22205 at 4803.899 kb on + strand, within DZA65_RS22205 at 4803.899 kb on + strand, within DZA65_RS22205 at 4803.899 kb on + strand, within DZA65_RS22205 at 4803.900 kb on - strand, within DZA65_RS22205 at 4803.900 kb on - strand, within DZA65_RS22205 at 4804.080 kb on + strand, within DZA65_RS22205 at 4804.080 kb on + strand, within DZA65_RS22205 at 4804.080 kb on + strand at 4804.080 kb on + strand, within DZA65_RS22205 at 4804.080 kb on + strand, within DZA65_RS22205 at 4804.080 kb on + strand, within DZA65_RS22205 at 4804.080 kb on + strand, within DZA65_RS22205 at 4804.081 kb on - strand, within DZA65_RS22205 at 4804.081 kb on - strand, within DZA65_RS22205 at 4804.081 kb on - strand, within DZA65_RS22205 at 4804.081 kb on - strand, within DZA65_RS22205 at 4804.081 kb on - strand, within DZA65_RS22205 at 4804.081 kb on - strand, within DZA65_RS22205 at 4804.081 kb on - strand, within DZA65_RS22205 at 4804.090 kb on + strand, within DZA65_RS22205 at 4804.090 kb on + strand, within DZA65_RS22205 at 4804.090 kb on + strand, within DZA65_RS22205 at 4804.091 kb on - strand, within DZA65_RS22205 at 4804.153 kb on - strand at 4804.201 kb on - strand at 4804.216 kb on + strand at 4804.216 kb on + strand at 4804.217 kb on - strand at 4804.217 kb on - strand at 4804.259 kb on - strand at 4804.259 kb on - strand at 4804.281 kb on - strand at 4804.353 kb on - strand at 4804.353 kb on - strand at 4804.393 kb on + strand, within DZA65_RS22210 at 4804.393 kb on + strand, within DZA65_RS22210 at 4804.393 kb on + strand, within DZA65_RS22210 at 4804.393 kb on + strand, within DZA65_RS22210 at 4804.393 kb on + strand, within DZA65_RS22210 at 4804.393 kb on + strand, within DZA65_RS22210 at 4804.394 kb on - strand, within DZA65_RS22210 at 4804.394 kb on - strand, within DZA65_RS22210 at 4804.394 kb on - strand, within DZA65_RS22210 at 4804.394 kb on - strand, within DZA65_RS22210 at 4804.394 kb on - strand, within DZA65_RS22210 at 4804.451 kb on + strand, within DZA65_RS22210 at 4804.451 kb on + strand, within DZA65_RS22210 at 4804.452 kb on - strand, within DZA65_RS22210 at 4804.525 kb on - strand, within DZA65_RS22210 at 4804.545 kb on + strand, within DZA65_RS22210 at 4804.545 kb on + strand, within DZA65_RS22210 at 4804.608 kb on + strand, within DZA65_RS22210 at 4804.608 kb on + strand, within DZA65_RS22210 at 4804.608 kb on + strand, within DZA65_RS22210 at 4804.608 kb on + strand, within DZA65_RS22210 at 4804.608 kb on + strand, within DZA65_RS22210 at 4804.608 kb on + strand, within DZA65_RS22210 at 4804.608 kb on + strand, within DZA65_RS22210 at 4804.608 kb on + strand, within DZA65_RS22210 at 4804.608 kb on + strand, within DZA65_RS22210 at 4804.609 kb on - strand, within DZA65_RS22210 at 4804.609 kb on - strand, within DZA65_RS22210 at 4804.609 kb on - strand, within DZA65_RS22210 at 4804.609 kb on - strand, within DZA65_RS22210 at 4804.609 kb on - strand, within DZA65_RS22210 at 4804.610 kb on + strand, within DZA65_RS22210 at 4804.610 kb on + strand, within DZA65_RS22210 at 4804.610 kb on + strand, within DZA65_RS22210 at 4804.610 kb on + strand, within DZA65_RS22210 at 4804.610 kb on + strand, within DZA65_RS22210 at 4804.610 kb on + strand, within DZA65_RS22210 at 4804.611 kb on - strand, within DZA65_RS22210 at 4804.611 kb on - strand, within DZA65_RS22210 at 4804.611 kb on - strand, within DZA65_RS22210 at 4804.611 kb on - strand, within DZA65_RS22210 at 4804.696 kb on + strand, within DZA65_RS22210 at 4804.696 kb on + strand, within DZA65_RS22210 at 4804.696 kb on + strand, within DZA65_RS22210 at 4804.696 kb on + strand, within DZA65_RS22210 at 4804.696 kb on + strand, within DZA65_RS22210 at 4804.697 kb on - strand, within DZA65_RS22210 at 4804.697 kb on - strand, within DZA65_RS22210 at 4804.969 kb on + strand, within DZA65_RS22210 at 4804.970 kb on - strand, within DZA65_RS22210 at 4805.047 kb on - strand, within DZA65_RS22210 at 4805.072 kb on + strand, within DZA65_RS22210 at 4805.073 kb on - strand, within DZA65_RS22210 at 4805.073 kb on - strand, within DZA65_RS22210 at 4805.155 kb on + strand, within DZA65_RS22210 at 4805.155 kb on + strand, within DZA65_RS22210 at 4805.198 kb on + strand, within DZA65_RS22210 at 4805.218 kb on - strand, within DZA65_RS22210
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 4,802,287 + DZA65_RS22200 0.51 +0.8 4,802,980 + -0.1 4,802,980 + -0.1 4,802,980 + +0.5 4,802,980 + +1.0 4,802,980 + -0.4 4,802,980 + -1.4 4,802,980 + +0.9 4,802,981 - -1.1 4,802,981 - -1.4 4,802,981 - -1.7 4,802,981 - -0.6 4,802,981 - -0.1 4,802,983 + -0.5 4,803,023 + +0.5 4,803,023 + -0.8 4,803,024 - +1.2 4,803,024 - +0.2 4,803,051 + +0.3 4,803,052 - +0.1 4,803,052 - -0.4 4,803,052 - +0.7 4,803,052 - -1.1 4,803,057 + -2.1 4,803,058 - -0.9 4,803,058 - +0.1 4,803,123 + -0.2 4,803,123 + +1.2 4,803,123 + -0.7 4,803,123 + -3.1 4,803,123 + -1.0 4,803,123 + -1.6 4,803,123 + +1.2 4,803,123 + -1.9 4,803,124 - +2.7 4,803,124 - -1.1 4,803,124 - +0.2 4,803,124 - +2.2 4,803,124 - -0.0 4,803,124 - -1.6 4,803,124 - +2.4 4,803,124 - -0.5 4,803,124 - +1.4 4,803,132 + +0.2 4,803,132 + -0.3 4,803,132 + -1.5 4,803,133 - +0.5 4,803,133 - +0.8 4,803,136 + +0.7 4,803,136 + -0.4 4,803,136 + -0.6 4,803,136 + -2.1 4,803,136 + -1.0 4,803,136 + -1.1 4,803,136 + +3.8 4,803,136 + +2.0 4,803,136 + -0.3 4,803,136 + +0.1 4,803,136 + +0.9 4,803,136 + +0.6 4,803,137 - -0.1 4,803,137 - -0.4 4,803,137 - -1.6 4,803,137 - -0.3 4,803,137 - -0.2 4,803,137 - -2.5 4,803,141 + +0.2 4,803,142 - +0.9 4,803,142 - -1.1 4,803,142 - -0.9 4,803,153 + -0.0 4,803,153 + -0.6 4,803,156 + +0.2 4,803,156 + +0.2 4,803,156 + -1.6 4,803,157 - +0.2 4,803,157 - -1.4 4,803,157 - -0.7 4,803,157 - -0.4 4,803,157 - +0.2 4,803,187 - -1.6 4,803,277 + -0.7 4,803,277 + +1.5 4,803,278 - -1.9 4,803,429 + DZA65_RS22205 0.23 -1.1 4,803,429 + DZA65_RS22205 0.23 +2.3 4,803,440 + DZA65_RS22205 0.24 -1.8 4,803,440 + DZA65_RS22205 0.24 -0.4 4,803,440 + DZA65_RS22205 0.24 +0.8 4,803,441 - DZA65_RS22205 0.24 -1.4 4,803,456 + DZA65_RS22205 0.26 -1.0 4,803,456 + DZA65_RS22205 0.26 +0.6 4,803,456 + DZA65_RS22205 0.26 +0.2 4,803,456 + DZA65_RS22205 0.26 +1.2 4,803,456 + DZA65_RS22205 0.26 -1.2 4,803,456 + DZA65_RS22205 0.26 -0.4 4,803,456 + DZA65_RS22205 0.26 -2.0 4,803,456 + DZA65_RS22205 0.26 -1.3 4,803,456 + DZA65_RS22205 0.26 -0.3 4,803,456 + DZA65_RS22205 0.26 -0.6 4,803,456 + DZA65_RS22205 0.26 +0.1 4,803,456 + DZA65_RS22205 0.26 -1.6 4,803,456 + DZA65_RS22205 0.26 +0.2 4,803,456 + DZA65_RS22205 0.26 -1.6 4,803,456 + DZA65_RS22205 0.26 -1.3 4,803,456 + DZA65_RS22205 0.26 -0.8 4,803,456 + DZA65_RS22205 0.26 +0.5 4,803,456 + DZA65_RS22205 0.26 +0.2 4,803,456 + DZA65_RS22205 0.26 +0.9 4,803,456 + DZA65_RS22205 0.26 +1.1 4,803,456 + DZA65_RS22205 0.26 -1.6 4,803,456 + DZA65_RS22205 0.26 -0.9 4,803,456 + DZA65_RS22205 0.26 -0.2 4,803,456 + DZA65_RS22205 0.26 -0.1 4,803,456 + DZA65_RS22205 0.26 -0.4 4,803,456 + DZA65_RS22205 0.26 -1.1 4,803,456 + DZA65_RS22205 0.26 -0.4 4,803,456 + DZA65_RS22205 0.26 -0.4 4,803,457 - DZA65_RS22205 0.26 -1.6 4,803,457 - DZA65_RS22205 0.26 -1.9 4,803,457 - DZA65_RS22205 0.26 -0.4 4,803,457 - DZA65_RS22205 0.26 -0.9 4,803,457 - DZA65_RS22205 0.26 -1.8 4,803,685 + DZA65_RS22205 0.47 -1.0 4,803,685 + DZA65_RS22205 0.47 +0.2 4,803,685 + DZA65_RS22205 0.47 -0.4 4,803,685 + DZA65_RS22205 0.47 +0.2 4,803,685 + DZA65_RS22205 0.47 +3.5 4,803,686 - DZA65_RS22205 0.48 -0.8 4,803,723 + DZA65_RS22205 0.51 -0.7 4,803,723 + DZA65_RS22205 0.51 -1.4 4,803,723 + DZA65_RS22205 0.51 -1.1 4,803,803 + DZA65_RS22205 0.59 -0.4 4,803,804 - DZA65_RS22205 0.59 +0.2 4,803,815 + DZA65_RS22205 0.60 -0.5 4,803,856 + DZA65_RS22205 0.64 +0.1 4,803,899 + DZA65_RS22205 0.68 -0.7 4,803,899 + DZA65_RS22205 0.68 +0.2 4,803,899 + DZA65_RS22205 0.68 -0.4 4,803,899 + DZA65_RS22205 0.68 -2.9 4,803,899 + DZA65_RS22205 0.68 +0.2 4,803,899 + DZA65_RS22205 0.68 -0.6 4,803,899 + DZA65_RS22205 0.68 +0.2 4,803,900 - DZA65_RS22205 0.68 -0.8 4,803,900 - DZA65_RS22205 0.68 -1.5 4,804,080 + DZA65_RS22205 0.85 +1.5 4,804,080 + DZA65_RS22205 0.85 -0.5 4,804,080 + +0.2 4,804,080 + DZA65_RS22205 0.85 -1.1 4,804,080 + DZA65_RS22205 0.85 -2.0 4,804,080 + DZA65_RS22205 0.85 -1.1 4,804,080 + DZA65_RS22205 0.85 +0.2 4,804,081 - DZA65_RS22205 0.85 -0.8 4,804,081 - DZA65_RS22205 0.85 -1.9 4,804,081 - DZA65_RS22205 0.85 -0.8 4,804,081 - DZA65_RS22205 0.85 -2.9 4,804,081 - DZA65_RS22205 0.85 -0.4 4,804,081 - DZA65_RS22205 0.85 -2.4 4,804,081 - DZA65_RS22205 0.85 -2.2 4,804,090 + DZA65_RS22205 0.86 -1.1 4,804,090 + DZA65_RS22205 0.86 +0.3 4,804,090 + DZA65_RS22205 0.86 -0.7 4,804,091 - DZA65_RS22205 0.86 -0.4 4,804,153 - -1.8 4,804,201 - -0.8 4,804,216 + +1.6 4,804,216 + +0.9 4,804,217 - -0.8 4,804,217 - -1.9 4,804,259 - -0.0 4,804,259 - -1.9 4,804,281 - -1.4 4,804,353 - -1.4 4,804,353 - -1.9 4,804,393 + DZA65_RS22210 0.10 -0.9 4,804,393 + DZA65_RS22210 0.10 -0.8 4,804,393 + DZA65_RS22210 0.10 -2.1 4,804,393 + DZA65_RS22210 0.10 -0.4 4,804,393 + DZA65_RS22210 0.10 +0.5 4,804,393 + DZA65_RS22210 0.10 -1.1 4,804,394 - DZA65_RS22210 0.11 -0.8 4,804,394 - DZA65_RS22210 0.11 -1.1 4,804,394 - DZA65_RS22210 0.11 -1.6 4,804,394 - DZA65_RS22210 0.11 -0.4 4,804,394 - DZA65_RS22210 0.11 -2.2 4,804,451 + DZA65_RS22210 0.15 -0.4 4,804,451 + DZA65_RS22210 0.15 -2.1 4,804,452 - DZA65_RS22210 0.15 -0.4 4,804,525 - DZA65_RS22210 0.20 +1.2 4,804,545 + DZA65_RS22210 0.21 -0.8 4,804,545 + DZA65_RS22210 0.21 -0.9 4,804,608 + DZA65_RS22210 0.26 -1.9 4,804,608 + DZA65_RS22210 0.26 -2.1 4,804,608 + DZA65_RS22210 0.26 -2.9 4,804,608 + DZA65_RS22210 0.26 -0.4 4,804,608 + DZA65_RS22210 0.26 -2.7 4,804,608 + DZA65_RS22210 0.26 -1.4 4,804,608 + DZA65_RS22210 0.26 -1.4 4,804,608 + DZA65_RS22210 0.26 -1.6 4,804,608 + DZA65_RS22210 0.26 -0.8 4,804,609 - DZA65_RS22210 0.26 -0.6 4,804,609 - DZA65_RS22210 0.26 -0.4 4,804,609 - DZA65_RS22210 0.26 -1.1 4,804,609 - DZA65_RS22210 0.26 -0.1 4,804,609 - DZA65_RS22210 0.26 -1.1 4,804,610 + DZA65_RS22210 0.26 +0.4 4,804,610 + DZA65_RS22210 0.26 +0.1 4,804,610 + DZA65_RS22210 0.26 -1.8 4,804,610 + DZA65_RS22210 0.26 -0.9 4,804,610 + DZA65_RS22210 0.26 +0.6 4,804,610 + DZA65_RS22210 0.26 -0.8 4,804,611 - DZA65_RS22210 0.26 -0.4 4,804,611 - DZA65_RS22210 0.26 -3.0 4,804,611 - DZA65_RS22210 0.26 -1.9 4,804,611 - DZA65_RS22210 0.26 -3.9 4,804,696 + DZA65_RS22210 0.32 -2.1 4,804,696 + DZA65_RS22210 0.32 -0.8 4,804,696 + DZA65_RS22210 0.32 -0.4 4,804,696 + DZA65_RS22210 0.32 -1.4 4,804,696 + DZA65_RS22210 0.32 -1.9 4,804,697 - DZA65_RS22210 0.32 -0.8 4,804,697 - DZA65_RS22210 0.32 -1.6 4,804,969 + DZA65_RS22210 0.51 -1.1 4,804,970 - DZA65_RS22210 0.51 -0.1 4,805,047 - DZA65_RS22210 0.57 -1.1 4,805,072 + DZA65_RS22210 0.59 +0.6 4,805,073 - DZA65_RS22210 0.59 -0.8 4,805,073 - DZA65_RS22210 0.59 -1.9 4,805,155 + DZA65_RS22210 0.64 -1.9 4,805,155 + DZA65_RS22210 0.64 -2.1 4,805,198 + DZA65_RS22210 0.67 -0.0 4,805,218 - DZA65_RS22210 0.69 -3.5
Or see this region's nucleotide sequence