Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS21530 and DZA65_RS21535 are separated by 132 nucleotides DZA65_RS21535 and DZA65_RS21540 are separated by 109 nucleotides DZA65_RS21540 and DZA65_RS21545 are separated by 13 nucleotides
DZA65_RS21530: DZA65_RS21530 - glycerol kinase GlpK, at 4,656,759 to 4,658,270
_RS21530
DZA65_RS21535: DZA65_RS21535 - class II fructose-bisphosphatase, at 4,658,403 to 4,659,413
_RS21535
DZA65_RS21540: DZA65_RS21540 - ferredoxin--NADP(+) reductase, at 4,659,523 to 4,660,269
_RS21540
DZA65_RS21545: DZA65_RS21545 - DUF805 domain-containing protein, at 4,660,283 to 4,660,708
_RS21545
Position (kb) 4658
4659
4660 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4657.435 kb on - strand, within DZA65_RS21530 at 4657.515 kb on + strand, within DZA65_RS21530 at 4657.515 kb on + strand, within DZA65_RS21530 at 4657.516 kb on - strand, within DZA65_RS21530 at 4657.516 kb on - strand, within DZA65_RS21530 at 4657.531 kb on + strand, within DZA65_RS21530 at 4657.532 kb on - strand, within DZA65_RS21530 at 4657.557 kb on + strand, within DZA65_RS21530 at 4657.557 kb on + strand, within DZA65_RS21530 at 4657.557 kb on + strand, within DZA65_RS21530 at 4657.558 kb on - strand, within DZA65_RS21530 at 4657.657 kb on + strand, within DZA65_RS21530 at 4657.657 kb on + strand, within DZA65_RS21530 at 4657.658 kb on - strand, within DZA65_RS21530 at 4657.658 kb on - strand, within DZA65_RS21530 at 4657.658 kb on - strand, within DZA65_RS21530 at 4657.658 kb on - strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.755 kb on + strand, within DZA65_RS21530 at 4657.791 kb on + strand, within DZA65_RS21530 at 4657.791 kb on + strand, within DZA65_RS21530 at 4657.791 kb on + strand, within DZA65_RS21530 at 4657.791 kb on + strand, within DZA65_RS21530 at 4657.791 kb on + strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.828 kb on - strand, within DZA65_RS21530 at 4657.921 kb on - strand, within DZA65_RS21530 at 4658.194 kb on + strand at 4658.194 kb on + strand at 4658.194 kb on + strand at 4658.195 kb on - strand at 4658.353 kb on + strand at 4658.354 kb on - strand at 4658.358 kb on + strand at 4658.358 kb on + strand at 4658.358 kb on + strand at 4658.358 kb on + strand at 4658.358 kb on + strand at 4658.358 kb on + strand at 4658.359 kb on - strand at 4658.359 kb on - strand at 4658.359 kb on - strand at 4658.359 kb on - strand at 4658.359 kb on - strand at 4658.359 kb on - strand at 4658.370 kb on + strand at 4658.370 kb on + strand at 4658.370 kb on + strand at 4658.371 kb on - strand at 4658.378 kb on + strand at 4658.378 kb on + strand at 4658.398 kb on + strand at 4658.399 kb on - strand at 4658.399 kb on - strand at 4658.416 kb on + strand at 4658.416 kb on + strand at 4658.416 kb on + strand at 4658.417 kb on - strand at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.938 kb on + strand, within DZA65_RS21535 at 4658.939 kb on - strand, within DZA65_RS21535 at 4658.939 kb on - strand, within DZA65_RS21535 at 4658.951 kb on + strand, within DZA65_RS21535 at 4658.979 kb on - strand, within DZA65_RS21535 at 4658.979 kb on - strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.047 kb on + strand, within DZA65_RS21535 at 4659.048 kb on - strand, within DZA65_RS21535 at 4659.048 kb on - strand, within DZA65_RS21535 at 4659.238 kb on + strand, within DZA65_RS21535 at 4659.362 kb on + strand at 4659.362 kb on + strand at 4659.363 kb on - strand at 4659.363 kb on - strand at 4659.412 kb on - strand at 4659.446 kb on + strand at 4659.447 kb on - strand at 4659.464 kb on - strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.578 kb on + strand at 4659.578 kb on + strand at 4659.579 kb on - strand at 4659.676 kb on + strand, within DZA65_RS21540 at 4659.676 kb on + strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.719 kb on - strand, within DZA65_RS21540 at 4659.883 kb on + strand, within DZA65_RS21540 at 4659.941 kb on + strand, within DZA65_RS21540 at 4659.942 kb on - strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.245 kb on + strand at 4660.245 kb on + strand at 4660.245 kb on + strand at 4660.246 kb on - strand at 4660.246 kb on - strand at 4660.261 kb on + strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.267 kb on + strand at 4660.268 kb on - strand at 4660.277 kb on + strand at 4660.331 kb on + strand, within DZA65_RS21545 at 4660.332 kb on - strand, within DZA65_RS21545 at 4660.343 kb on - strand, within DZA65_RS21545 at 4660.382 kb on - strand, within DZA65_RS21545
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 4,657,435 - DZA65_RS21530 0.45 +0.4 4,657,515 + DZA65_RS21530 0.50 -0.3 4,657,515 + DZA65_RS21530 0.50 +0.6 4,657,516 - DZA65_RS21530 0.50 -0.1 4,657,516 - DZA65_RS21530 0.50 -0.4 4,657,531 + DZA65_RS21530 0.51 -0.2 4,657,532 - DZA65_RS21530 0.51 +0.2 4,657,557 + DZA65_RS21530 0.53 -1.4 4,657,557 + DZA65_RS21530 0.53 +1.2 4,657,557 + DZA65_RS21530 0.53 -1.8 4,657,558 - DZA65_RS21530 0.53 +0.0 4,657,657 + DZA65_RS21530 0.59 +2.2 4,657,657 + DZA65_RS21530 0.59 -0.1 4,657,658 - DZA65_RS21530 0.59 -0.8 4,657,658 - DZA65_RS21530 0.59 +0.5 4,657,658 - DZA65_RS21530 0.59 +0.2 4,657,658 - DZA65_RS21530 0.59 -0.8 4,657,662 + DZA65_RS21530 0.60 -3.0 4,657,662 + -0.1 4,657,662 + DZA65_RS21530 0.60 -0.0 4,657,662 + DZA65_RS21530 0.60 +1.2 4,657,662 + DZA65_RS21530 0.60 -1.4 4,657,662 + DZA65_RS21530 0.60 +0.6 4,657,662 + DZA65_RS21530 0.60 -0.1 4,657,662 + +1.8 4,657,662 + DZA65_RS21530 0.60 +0.8 4,657,662 + DZA65_RS21530 0.60 +0.1 4,657,662 + DZA65_RS21530 0.60 +0.3 4,657,662 + DZA65_RS21530 0.60 +1.2 4,657,663 - DZA65_RS21530 0.60 -0.6 4,657,663 - DZA65_RS21530 0.60 -1.8 4,657,663 - DZA65_RS21530 0.60 -1.6 4,657,663 - DZA65_RS21530 0.60 -0.7 4,657,663 - DZA65_RS21530 0.60 +1.3 4,657,663 - DZA65_RS21530 0.60 +0.4 4,657,663 - DZA65_RS21530 0.60 +1.4 4,657,663 - DZA65_RS21530 0.60 +1.2 4,657,663 - DZA65_RS21530 0.60 -0.4 4,657,663 - DZA65_RS21530 0.60 +0.7 4,657,663 - DZA65_RS21530 0.60 +0.2 4,657,755 + DZA65_RS21530 0.66 -1.6 4,657,791 + DZA65_RS21530 0.68 +0.6 4,657,791 + DZA65_RS21530 0.68 -0.4 4,657,791 + DZA65_RS21530 0.68 +1.2 4,657,791 + DZA65_RS21530 0.68 -0.4 4,657,791 + DZA65_RS21530 0.68 -2.2 4,657,792 - DZA65_RS21530 0.68 -0.8 4,657,792 - DZA65_RS21530 0.68 -0.2 4,657,792 - DZA65_RS21530 0.68 -0.4 4,657,792 - DZA65_RS21530 0.68 -2.8 4,657,792 - DZA65_RS21530 0.68 +0.2 4,657,792 - DZA65_RS21530 0.68 +0.8 4,657,792 - DZA65_RS21530 0.68 -0.6 4,657,792 - DZA65_RS21530 0.68 +0.5 4,657,792 - DZA65_RS21530 0.68 +1.0 4,657,792 - DZA65_RS21530 0.68 -1.2 4,657,828 - DZA65_RS21530 0.71 +0.1 4,657,921 - DZA65_RS21530 0.77 +0.7 4,658,194 + -1.0 4,658,194 + +1.2 4,658,194 + -0.8 4,658,195 - -0.8 4,658,353 + -0.8 4,658,354 - -0.2 4,658,358 + -0.4 4,658,358 + +1.2 4,658,358 + +0.5 4,658,358 + -1.4 4,658,358 + -0.2 4,658,358 + +0.7 4,658,359 - -0.1 4,658,359 - -0.3 4,658,359 - -0.4 4,658,359 - +1.3 4,658,359 - -0.8 4,658,359 - +2.0 4,658,370 + +0.4 4,658,370 + -2.1 4,658,370 + +0.5 4,658,371 - -0.3 4,658,378 + -0.8 4,658,378 + -0.0 4,658,398 + -0.4 4,658,399 - -0.4 4,658,399 - +1.0 4,658,416 + +1.2 4,658,416 + -1.1 4,658,416 + +0.2 4,658,417 - +1.0 4,658,601 + DZA65_RS21535 0.20 -0.8 4,658,601 + DZA65_RS21535 0.20 -0.8 4,658,601 + DZA65_RS21535 0.20 +0.0 4,658,601 + DZA65_RS21535 0.20 +1.6 4,658,601 + DZA65_RS21535 0.20 -1.1 4,658,601 + +0.8 4,658,602 - DZA65_RS21535 0.20 -0.4 4,658,602 - DZA65_RS21535 0.20 -0.1 4,658,602 - DZA65_RS21535 0.20 +1.1 4,658,602 - DZA65_RS21535 0.20 -0.6 4,658,602 - DZA65_RS21535 0.20 +0.9 4,658,602 - DZA65_RS21535 0.20 -1.8 4,658,602 - DZA65_RS21535 0.20 -1.1 4,658,602 - DZA65_RS21535 0.20 -1.6 4,658,602 - DZA65_RS21535 0.20 -1.5 4,658,757 + DZA65_RS21535 0.35 -0.4 4,658,757 + DZA65_RS21535 0.35 +0.7 4,658,757 + DZA65_RS21535 0.35 -0.8 4,658,757 + DZA65_RS21535 0.35 -0.0 4,658,757 + DZA65_RS21535 0.35 +0.7 4,658,757 + DZA65_RS21535 0.35 -1.6 4,658,757 + DZA65_RS21535 0.35 -0.3 4,658,757 + DZA65_RS21535 0.35 -0.4 4,658,757 + DZA65_RS21535 0.35 -1.4 4,658,757 + DZA65_RS21535 0.35 -1.0 4,658,757 + DZA65_RS21535 0.35 +1.2 4,658,757 + DZA65_RS21535 0.35 +3.0 4,658,757 + DZA65_RS21535 0.35 +0.8 4,658,757 + DZA65_RS21535 0.35 +1.0 4,658,757 + DZA65_RS21535 0.35 -1.9 4,658,757 + DZA65_RS21535 0.35 -0.0 4,658,757 + DZA65_RS21535 0.35 +0.9 4,658,757 + DZA65_RS21535 0.35 -1.8 4,658,757 + DZA65_RS21535 0.35 +0.8 4,658,757 + DZA65_RS21535 0.35 -0.7 4,658,758 - DZA65_RS21535 0.35 +1.4 4,658,758 - DZA65_RS21535 0.35 -1.0 4,658,758 - DZA65_RS21535 0.35 +0.1 4,658,758 - DZA65_RS21535 0.35 +1.7 4,658,758 - DZA65_RS21535 0.35 +0.1 4,658,758 - DZA65_RS21535 0.35 +0.2 4,658,758 - DZA65_RS21535 0.35 -0.4 4,658,758 - DZA65_RS21535 0.35 +0.9 4,658,758 - DZA65_RS21535 0.35 -1.4 4,658,758 - DZA65_RS21535 0.35 -2.0 4,658,758 - DZA65_RS21535 0.35 +1.4 4,658,758 - DZA65_RS21535 0.35 +0.6 4,658,758 - DZA65_RS21535 0.35 -0.0 4,658,938 + DZA65_RS21535 0.53 +0.6 4,658,939 - DZA65_RS21535 0.53 +1.2 4,658,939 - DZA65_RS21535 0.53 +0.5 4,658,951 + DZA65_RS21535 0.54 -1.3 4,658,979 - DZA65_RS21535 0.57 +0.2 4,658,979 - DZA65_RS21535 0.57 -1.1 4,659,018 + DZA65_RS21535 0.61 +0.4 4,659,018 + DZA65_RS21535 0.61 +1.1 4,659,018 + DZA65_RS21535 0.61 +0.8 4,659,018 + DZA65_RS21535 0.61 -2.5 4,659,019 - DZA65_RS21535 0.61 -0.2 4,659,019 - DZA65_RS21535 0.61 +1.2 4,659,019 - DZA65_RS21535 0.61 +2.3 4,659,019 - DZA65_RS21535 0.61 +0.5 4,659,047 + DZA65_RS21535 0.64 +0.7 4,659,048 - DZA65_RS21535 0.64 +1.8 4,659,048 - DZA65_RS21535 0.64 +1.2 4,659,238 + DZA65_RS21535 0.83 -0.6 4,659,362 + -0.1 4,659,362 + +0.5 4,659,363 - +0.2 4,659,363 - +0.5 4,659,412 - +1.4 4,659,446 + -0.7 4,659,447 - -1.8 4,659,464 - +1.4 4,659,516 + -1.1 4,659,516 + +0.2 4,659,516 + +0.2 4,659,516 + +2.5 4,659,516 + +0.0 4,659,516 + -1.9 4,659,517 - +0.5 4,659,517 - -2.7 4,659,517 - +0.8 4,659,517 - +1.2 4,659,517 - +0.5 4,659,517 - +0.6 4,659,578 + -0.5 4,659,578 + -1.0 4,659,579 - -0.4 4,659,676 + DZA65_RS21540 0.20 -0.8 4,659,676 + DZA65_RS21540 0.20 +1.0 4,659,677 - DZA65_RS21540 0.21 +0.8 4,659,677 - DZA65_RS21540 0.21 -1.5 4,659,677 - DZA65_RS21540 0.21 -1.1 4,659,682 + DZA65_RS21540 0.21 +0.7 4,659,682 + DZA65_RS21540 0.21 -0.9 4,659,682 + DZA65_RS21540 0.21 -0.5 4,659,682 + DZA65_RS21540 0.21 -0.4 4,659,683 - DZA65_RS21540 0.21 -1.9 4,659,683 - -1.8 4,659,683 - DZA65_RS21540 0.21 -0.8 4,659,683 - DZA65_RS21540 0.21 -0.4 4,659,683 - DZA65_RS21540 0.21 -0.7 4,659,683 - DZA65_RS21540 0.21 +0.6 4,659,683 - DZA65_RS21540 0.21 +0.8 4,659,719 - DZA65_RS21540 0.26 -1.8 4,659,883 + DZA65_RS21540 0.48 +0.2 4,659,941 + DZA65_RS21540 0.56 +1.1 4,659,942 - DZA65_RS21540 0.56 +1.2 4,660,006 + DZA65_RS21540 0.65 +1.2 4,660,006 + DZA65_RS21540 0.65 -0.1 4,660,006 + DZA65_RS21540 0.65 +0.3 4,660,245 + -3.0 4,660,245 + +1.2 4,660,245 + -0.0 4,660,246 - +1.0 4,660,246 - -0.5 4,660,261 + +0.4 4,660,262 - +0.6 4,660,262 - +0.0 4,660,262 - +1.0 4,660,262 - -0.8 4,660,267 + +1.8 4,660,268 - +1.2 4,660,277 + +0.0 4,660,331 + DZA65_RS21545 0.11 -3.0 4,660,332 - DZA65_RS21545 0.12 -0.9 4,660,343 - DZA65_RS21545 0.14 -0.1 4,660,382 - DZA65_RS21545 0.23 +0.2
Or see this region's nucleotide sequence