Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20595

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,441,556	+		DZA65_RS20590	0.21	-0.3
4,441,574	+		DZA65_RS20590	0.23	-0.2
4,441,575	-		DZA65_RS20590	0.23	-0.6
4,441,575	-		DZA65_RS20590	0.23	+0.1
4,441,779	+		DZA65_RS20590	0.42	-1.2
4,441,780	-		DZA65_RS20590	0.42	-1.3
4,441,780	-		DZA65_RS20590	0.42	+1.8
4,442,036	+		DZA65_RS20590	0.67	-0.3
4,442,036	+		DZA65_RS20590	0.67	+1.1
4,442,036	+		DZA65_RS20590	0.67	+0.8
4,442,036	+		DZA65_RS20590	0.67	+0.5
4,442,036	+		DZA65_RS20590	0.67	-0.5
4,442,036	+		DZA65_RS20590	0.67	-1.9
4,442,036	+		DZA65_RS20590	0.67	+0.9
4,442,037	-		DZA65_RS20590	0.67	+1.1
4,442,037	-		DZA65_RS20590	0.67	-1.0
4,442,037	-		DZA65_RS20590	0.67	-0.6
4,442,082	+		DZA65_RS20590	0.71	-0.3
4,442,082	+		DZA65_RS20590	0.71	-0.3
4,442,082	+		DZA65_RS20590	0.71	-0.5
4,442,082	+		DZA65_RS20590	0.71	-0.5
4,442,082	+		DZA65_RS20590	0.71	-0.3
4,442,082	+		DZA65_RS20590	0.71	-0.1
4,442,082	+		DZA65_RS20590	0.71	+1.5
4,442,082	+		DZA65_RS20590	0.71	+1.1
4,442,082	+		DZA65_RS20590	0.71	-0.6
4,442,082	+		DZA65_RS20590	0.71	-0.6
4,442,083	-		DZA65_RS20590	0.71	+1.1
4,442,083	-		DZA65_RS20590	0.71	-0.9
4,442,083	-		DZA65_RS20590	0.71	+2.5
4,442,083	-		DZA65_RS20590	0.71	-0.9
4,442,087	+		DZA65_RS20590	0.72	-1.2
4,442,087	+		DZA65_RS20590	0.72	-0.2
4,442,087	+		DZA65_RS20590	0.72	-0.5
4,442,088	-		DZA65_RS20590	0.72	+0.3
4,442,125	-		DZA65_RS20590	0.75	+0.1
4,442,184	+		DZA65_RS20590	0.81	-0.9
4,442,184	+		DZA65_RS20590	0.81	-1.9
4,442,184	+		DZA65_RS20590	0.81	-0.5
4,442,184	+		DZA65_RS20590	0.81	-2.3
4,442,184	+		DZA65_RS20590	0.81	-1.7
4,442,185	-		DZA65_RS20590	0.81	+1.8
4,442,185	-		DZA65_RS20590	0.81	+1.1
4,442,185	-		DZA65_RS20590	0.81	-0.1
4,442,243	-		DZA65_RS20590	0.87	+0.8
4,442,254	+		DZA65_RS20590	0.88	+0.8
4,442,254	+		DZA65_RS20590	0.88	-0.1
4,442,254	+		DZA65_RS20590	0.88	-1.2
4,442,254	+		DZA65_RS20590	0.88	+1.1
4,442,254	+		DZA65_RS20590	0.88	-1.1
4,442,255	-		DZA65_RS20590	0.88	-0.5
4,442,255	-		DZA65_RS20590	0.88	+0.5
4,442,255	-		DZA65_RS20590	0.88	-0.1
4,442,255	-		DZA65_RS20590	0.88	-0.5
4,442,255	-		DZA65_RS20590	0.88	-0.5
4,442,255	-		DZA65_RS20590	0.88	+0.3
4,442,255	-		DZA65_RS20590	0.88	-0.5
4,442,255	-		DZA65_RS20590	0.88	-1.9
4,442,404	+				-0.5
4,442,404	+				+0.5
4,442,405	-				+0.5
4,442,405	-				-3.3
4,442,405	-				+1.1
4,442,405	-				-1.1
4,442,452	+				+0.4
4,442,452	+				-1.1
4,442,564	+				-0.7
4,442,564	+				+0.1
4,442,564	+				+0.1
4,442,565	-				+0.9
4,442,732	+		DZA65_RS20595	0.20	-0.9
4,442,816	+		DZA65_RS20595	0.28	-1.2
4,442,817	-		DZA65_RS20595	0.28	+0.7
4,442,817	-		DZA65_RS20595	0.28	-0.5
4,442,823	+		DZA65_RS20595	0.29	-0.5
4,442,823	+		DZA65_RS20595	0.29	-1.5
4,442,824	-		DZA65_RS20595	0.29	-1.2
4,442,824	-		DZA65_RS20595	0.29	-0.9
4,442,824	-		DZA65_RS20595	0.29	-0.0
4,442,913	-		DZA65_RS20595	0.38	+1.5
4,442,913	-		DZA65_RS20595	0.38	-0.0
4,442,934	-		DZA65_RS20595	0.40	+1.1
4,442,953	+		DZA65_RS20595	0.41	-0.5
4,442,953	+		DZA65_RS20595	0.41	-0.3
4,442,954	-		DZA65_RS20595	0.42	-0.9
4,442,954	-		DZA65_RS20595	0.42	+1.5
4,443,286	-		DZA65_RS20595	0.74	-0.5
4,443,286	-		DZA65_RS20595	0.74	-0.7
4,443,350	+		DZA65_RS20595	0.80	-0.6
4,443,384	+		DZA65_RS20595	0.84	+0.7
4,443,407	+		DZA65_RS20595	0.86	+0.7
4,443,407	+		DZA65_RS20595	0.86	-0.5
4,443,408	-		DZA65_RS20595	0.86	-1.6
4,443,408	-		DZA65_RS20595	0.86	+1.2
4,443,472	+				+1.1
4,443,472	+				-1.5
4,443,472	+				+0.0
4,443,472	+				+0.0
4,443,507	+				-0.5
4,443,507	+				+0.9
4,443,507	+				+0.1
4,443,507	+				+0.3
4,443,508	-				+0.3
4,443,508	-				+0.1
4,443,508	-				-0.5
4,443,521	+				-2.3
4,443,522	-				+0.5
4,443,522	-				-0.2
4,443,522	-				+0.6
4,443,549	+				+1.6
4,443,549	+				+1.5
4,443,549	+				+2.5
4,443,550	-				+2.3
4,443,550	-				-1.5
4,443,550	-				+1.1
4,443,550	-				-0.2
4,443,550	-				+1.4
4,443,550	-				-2.5
4,443,550	-				+3.3
4,443,556	+				-0.7
4,443,556	+				-0.3
4,443,556	+				+0.1
4,443,557	-				-1.0
4,443,557	-				-2.3
4,443,557	-				-0.5
4,443,557	-				+0.1
4,443,598	+				-1.2
4,443,598	+				+1.4
4,443,598	+				-0.6
4,443,598	+				-0.1
4,443,598	+				-0.3
4,443,598	+				+0.9
4,443,598	+				-1.5
4,443,598	+				-0.0
4,443,598	+				+1.1
4,443,599	-				-0.5
4,443,599	-				-1.2
4,443,599	-				-0.9
4,443,599	-				+1.7
4,443,599	-				+0.5
4,443,599	-				+0.9
4,443,599	-				-0.2
4,443,614	+				-1.9
4,443,614	+				+1.0
4,443,614	+				-0.4
4,443,614	+				-2.3
4,443,615	-				-2.0
4,443,615	-				+1.1
4,443,615	-				-1.7
4,443,615	-				-0.2
4,443,630	+				+0.0
4,443,630	+				+0.7
4,443,630	+				-1.7
4,443,630	+				-1.7
4,443,631	-				-0.1
4,443,631	-				-0.1
4,443,631	-				-2.2
4,443,631	-				+1.5
4,443,647	-				-0.9
4,443,663	-				+0.1
4,443,663	-				+1.2
4,443,776	+				+1.1
4,443,777	-				-2.0
4,443,777	-				+1.1
4,443,890	+				+0.1
4,443,890	+				+0.8
4,443,890	+				+0.7
4,443,891	-				+0.1
4,443,891	-				+0.4
4,443,891	-				+0.1
4,443,891	-				-0.7
4,443,925	-				-0.3
4,443,927	-				+0.0
4,443,927	-				-0.2
4,443,970	+				-1.7
4,443,998	-				+0.1
4,443,998	-				-1.1
4,444,062	+				-0.5
4,444,063	-				-0.9
4,444,077	+				+1.1
4,444,077	+				+0.4
4,444,077	+				-0.5
4,444,077	+				-2.2
4,444,078	-				-0.5
4,444,078	-				+1.0
4,444,078	-				-0.5
4,444,078	-				+0.7
4,444,127	+		DZA65_RS20600	0.10	+1.1
4,444,127	+		DZA65_RS20600	0.10	-1.6
4,444,127	+		DZA65_RS20600	0.10	+0.9
4,444,128	-		DZA65_RS20600	0.11	+0.5
4,444,140	+		DZA65_RS20600	0.11	+0.1
4,444,140	+		DZA65_RS20600	0.11	+0.7
4,444,140	+		DZA65_RS20600	0.11	+1.1
4,444,140	+		DZA65_RS20600	0.11	-2.3
4,444,140	+		DZA65_RS20600	0.11	+0.4
4,444,140	+		DZA65_RS20600	0.11	+0.6
4,444,140	+		DZA65_RS20600	0.11	-1.3
4,444,140	+		DZA65_RS20600	0.11	+0.1
4,444,140	+		DZA65_RS20600	0.11	-1.3
4,444,140	+		DZA65_RS20600	0.11	+1.1
4,444,140	+		DZA65_RS20600	0.11	+0.7
4,444,140	+		DZA65_RS20600	0.11	-0.1
4,444,140	+		DZA65_RS20600	0.11	-0.1
4,444,140	+		DZA65_RS20600	0.11	-0.5
4,444,140	+		DZA65_RS20600	0.11	+0.3
4,444,140	+		DZA65_RS20600	0.11	+1.3
4,444,140	+		DZA65_RS20600	0.11	-1.5
4,444,140	+		DZA65_RS20600	0.11	+1.1
4,444,140	+		DZA65_RS20600	0.11	-0.3
4,444,140	+				-1.2
4,444,140	+		DZA65_RS20600	0.11	-0.5
4,444,140	+		DZA65_RS20600	0.11	-1.6
4,444,140	+		DZA65_RS20600	0.11	+0.1
4,444,140	+		DZA65_RS20600	0.11	+0.9
4,444,140	+		DZA65_RS20600	0.11	+0.4
4,444,140	+		DZA65_RS20600	0.11	-0.6
4,444,140	+		DZA65_RS20600	0.11	-0.5
4,444,140	+		DZA65_RS20600	0.11	-0.5
4,444,140	+		DZA65_RS20600	0.11	-0.7
4,444,140	+		DZA65_RS20600	0.11	-2.9
4,444,140	+		DZA65_RS20600	0.11	+0.9
4,444,140	+		DZA65_RS20600	0.11	-0.9
4,444,140	+		DZA65_RS20600	0.11	+0.8
4,444,140	+		DZA65_RS20600	0.11	-1.2
4,444,140	+		DZA65_RS20600	0.11	+0.8
4,444,140	+		DZA65_RS20600	0.11	-2.1
4,444,141	-		DZA65_RS20600	0.11	-1.3
4,444,141	-		DZA65_RS20600	0.11	+0.9
4,444,141	-		DZA65_RS20600	0.11	-0.5
4,444,141	-		DZA65_RS20600	0.11	-0.1
4,444,141	-		DZA65_RS20600	0.11	+0.4
4,444,141	-		DZA65_RS20600	0.11	-0.3
4,444,141	-		DZA65_RS20600	0.11	+1.0
4,444,141	-		DZA65_RS20600	0.11	-2.2
4,444,141	-		DZA65_RS20600	0.11	-1.9
4,444,141	-		DZA65_RS20600	0.11	-1.4
4,444,141	-		DZA65_RS20600	0.11	+0.9
4,444,141	-		DZA65_RS20600	0.11	-0.5
4,444,141	-		DZA65_RS20600	0.11	-0.2
4,444,141	-		DZA65_RS20600	0.11	+0.1
4,444,141	-		DZA65_RS20600	0.11	+1.1
4,444,141	-		DZA65_RS20600	0.11	+1.6
4,444,141	-		DZA65_RS20600	0.11	+0.5
4,444,141	-		DZA65_RS20600	0.11	+2.1
4,444,141	-		DZA65_RS20600	0.11	-0.5
4,444,141	-		DZA65_RS20600	0.11	+0.7
4,444,141	-		DZA65_RS20600	0.11	+3.1
4,444,141	-		DZA65_RS20600	0.11	-0.1
4,444,141	-		DZA65_RS20600	0.11	+0.1
4,444,141	-		DZA65_RS20600	0.11	-0.3
4,444,141	-		DZA65_RS20600	0.11	+0.0
4,444,141	-		DZA65_RS20600	0.11	+0.3
4,444,141	-		DZA65_RS20600	0.11	+0.4
4,444,141	-		DZA65_RS20600	0.11	-1.9
4,444,141	-		DZA65_RS20600	0.11	+0.5
4,444,141	-		DZA65_RS20600	0.11	-1.5
4,444,141	-		DZA65_RS20600	0.11	+0.1
4,444,141	-		DZA65_RS20600	0.11	+0.1
4,444,141	-		DZA65_RS20600	0.11	+1.4
4,444,141	-		DZA65_RS20600	0.11	+0.7
4,444,141	-		DZA65_RS20600	0.11	+0.9
4,444,141	-		DZA65_RS20600	0.11	+0.4
4,444,141	-		DZA65_RS20600	0.11	+0.6
4,444,141	-		DZA65_RS20600	0.11	+1.9
4,444,141	-		DZA65_RS20600	0.11	+1.4
4,444,142	+		DZA65_RS20600	0.12	-0.2
4,444,142	+		DZA65_RS20600	0.12	-0.1
4,444,142	+		DZA65_RS20600	0.12	+1.1
4,444,142	+		DZA65_RS20600	0.12	+1.1
4,444,143	-		DZA65_RS20600	0.12	-0.5
4,444,143	-		DZA65_RS20600	0.12	-0.9
4,444,143	-		DZA65_RS20600	0.12	+1.5
4,444,143	-		DZA65_RS20600	0.12	-0.3
4,444,143	-		DZA65_RS20600	0.12	+1.9
4,444,143	-		DZA65_RS20600	0.12	-1.0
4,444,314	+				+0.3
4,444,314	+		DZA65_RS20600	0.24	-0.2
4,444,314	+		DZA65_RS20600	0.24	-0.0
4,444,315	-		DZA65_RS20600	0.24	-0.9
4,444,368	+		DZA65_RS20600	0.28	+0.1
4,444,368	+		DZA65_RS20600	0.28	-1.5
4,444,369	-		DZA65_RS20600	0.28	-0.5
4,444,369	-		DZA65_RS20600	0.28	+1.4
4,444,369	-		DZA65_RS20600	0.28	+1.5
4,444,392	-		DZA65_RS20600	0.30	-0.7
4,444,392	-		DZA65_RS20600	0.30	+0.6
4,444,438	+		DZA65_RS20600	0.33	+0.1
4,444,439	-		DZA65_RS20600	0.33	+2.7
4,444,439	-		DZA65_RS20600	0.33	-1.2
4,444,456	+		DZA65_RS20600	0.35	-1.1
4,444,457	-		DZA65_RS20600	0.35	-0.5
4,444,457	-		DZA65_RS20600	0.35	-2.0
4,444,457	-		DZA65_RS20600	0.35	+0.1