Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20565

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,435,486	+				-1.2
4,435,491	+				-1.9
4,435,491	+				-1.9
4,435,492	-				+0.3
4,435,492	-				-0.9
4,435,492	-				-1.7
4,435,492	-				+0.7
4,435,492	-				+1.5
4,435,492	-				-1.7
4,435,492	-				-0.6
4,435,492	-				-0.5
4,435,492	-				+1.8
4,435,492	-				-2.0
4,435,498	-				-0.5
4,435,542	+				-2.6
4,435,542	+				+0.1
4,435,542	+				+0.9
4,435,542	+				-1.4
4,435,542	+				-1.3
4,435,542	+				-1.5
4,435,543	-				-0.5
4,435,543	-				-0.2
4,435,543	-				-0.5
4,435,543	-				-1.2
4,435,543	-				+0.9
4,435,549	-				-2.0
4,435,568	-				-0.2
4,435,616	-		DZA65_RS20560	0.17	-0.9
4,435,627	-		DZA65_RS20560	0.18	-0.5
4,435,627	-		DZA65_RS20560	0.18	+0.2
4,435,825	+		DZA65_RS20560	0.46	+0.1
4,435,826	-		DZA65_RS20560	0.46	-0.3
4,435,826	-		DZA65_RS20560	0.46	-0.1
4,435,826	-		DZA65_RS20560	0.46	+1.6
4,435,826	-		DZA65_RS20560	0.46	-0.2
4,435,896	-		DZA65_RS20560	0.55	+1.9
4,435,896	-		DZA65_RS20560	0.55	-0.6
4,435,920	+		DZA65_RS20560	0.59	-1.2
4,435,921	-		DZA65_RS20560	0.59	-0.9
4,436,002	+		DZA65_RS20560	0.70	-1.9
4,436,003	-		DZA65_RS20560	0.70	-1.7
4,436,125	-		DZA65_RS20560	0.87	-1.5
4,436,142	+		DZA65_RS20560	0.89	+0.1
4,436,143	-		DZA65_RS20560	0.89	+2.9
4,436,201	-				-2.3
4,436,212	+				-1.9
4,436,212	+				-0.5
4,436,213	-				-1.2
4,436,213	-				+0.4
4,436,213	-				+2.7
4,436,213	-				-0.2
4,436,213	-				+0.0
4,436,213	-				+0.5
4,436,213	-				+0.1
4,436,213	-				-1.5
4,436,213	-				-0.6
4,436,244	+				-1.1
4,436,245	-				+0.3
4,436,245	-				-0.9
4,436,245	-				+0.1
4,436,245	-				+1.0
4,436,272	+				-1.9
4,436,279	+				+0.5
4,436,279	+				-0.2
4,436,300	+				-0.1
4,436,300	+				+0.5
4,436,300	+				+0.7
4,436,301	-				+1.1
4,436,301	-				+0.1
4,436,301	-				-1.1
4,436,301	-				-0.5
4,436,331	+				+0.8
4,436,331	+				-0.0
4,436,343	-				-1.2
4,436,343	-				+0.1
4,436,343	-				-1.5
4,436,343	-				+0.1
4,436,348	-				-1.2
4,436,356	+				-0.2
4,436,356	+				-0.1
4,436,356	+				+0.1
4,436,357	-				-1.4
4,436,357	-				-0.3
4,436,357	-				+1.4
4,436,357	-				-0.5
4,436,373	+				+1.1
4,436,373	+				+0.2
4,436,373	+				+0.4
4,436,374	-				-0.5
4,436,374	-				+0.4
4,436,374	-				+0.7
4,436,374	-				-0.5
4,436,379	-				+0.7
4,436,414	-				-0.9
4,436,414	-				+0.3
4,436,446	+				+0.3
4,436,446	+				+1.1
4,436,447	-				-0.2
4,436,447	-				+1.1
4,436,447	-				-1.3
4,436,450	+				-0.6
4,436,451	-				-0.0
4,436,451	-				+0.4
4,436,451	-				-0.0
4,436,492	-				+2.4
4,436,498	+				+0.1
4,436,498	+				+1.1
4,436,499	-				+1.6
4,436,499	-				+0.6
4,436,501	+				-1.7
4,436,501	+				-1.1
4,436,501	+				-0.1
4,436,501	+				+1.3
4,436,502	-				-0.2
4,436,502	-				+1.3
4,436,511	+				-0.4
4,436,511	+				-2.0
4,436,511	+				+0.6
4,436,512	-				+0.3
4,436,512	-				+0.5
4,436,512	-				-0.6
4,436,512	-				-1.7
4,436,512	-				-0.7
4,436,512	-				+0.4
4,436,512	-				-0.1
4,436,514	+				+1.1
4,436,514	+				+0.5
4,436,514	+				+0.0
4,436,514	+				+0.4
4,436,515	-				+0.7
4,436,550	+				+2.3
4,436,551	-				+0.7
4,436,551	-				-0.5
4,436,586	+		DZA65_RS20565	0.11	-0.4
4,436,593	+		DZA65_RS20565	0.12	-1.7
4,436,593	+		DZA65_RS20565	0.12	+1.1
4,436,594	-		DZA65_RS20565	0.12	-0.9
4,436,670	+		DZA65_RS20565	0.16	+2.0
4,436,675	+		DZA65_RS20565	0.17	+2.5
4,436,675	+		DZA65_RS20565	0.17	+2.7
4,436,675	+		DZA65_RS20565	0.17	-2.3
4,436,675	+		DZA65_RS20565	0.17	-1.2
4,436,675	+		DZA65_RS20565	0.17	-0.1
4,436,675	+		DZA65_RS20565	0.17	-0.2
4,436,675	+				-0.5
4,436,675	+		DZA65_RS20565	0.17	+0.8
4,436,675	+		DZA65_RS20565	0.17	+0.5
4,436,676	-		DZA65_RS20565	0.17	-0.5
4,436,676	-		DZA65_RS20565	0.17	+0.7
4,436,676	-		DZA65_RS20565	0.17	+0.1
4,436,676	-		DZA65_RS20565	0.17	-0.9
4,436,690	+				-1.9
4,436,690	+		DZA65_RS20565	0.18	-0.3
4,436,690	+		DZA65_RS20565	0.18	+0.4
4,436,691	-		DZA65_RS20565	0.18	+0.1
4,436,691	-		DZA65_RS20565	0.18	-2.3
4,436,691	-		DZA65_RS20565	0.18	-0.3
4,436,710	+		DZA65_RS20565	0.19	+0.1
4,436,774	+		DZA65_RS20565	0.23	+2.1
4,436,774	+		DZA65_RS20565	0.23	-0.1
4,436,774	+		DZA65_RS20565	0.23	+0.1
4,436,774	+		DZA65_RS20565	0.23	-0.9
4,436,774	+		DZA65_RS20565	0.23	+1.1
4,436,774	+		DZA65_RS20565	0.23	+0.4
4,436,775	-		DZA65_RS20565	0.23	+0.1
4,436,775	-		DZA65_RS20565	0.23	+0.5
4,436,775	-		DZA65_RS20565	0.23	+0.6
4,436,831	-		DZA65_RS20565	0.26	+0.0
4,436,851	-		DZA65_RS20565	0.27	+0.0
4,436,905	+		DZA65_RS20565	0.31	-0.1
4,436,906	-		DZA65_RS20565	0.31	+0.1
4,436,930	+		DZA65_RS20565	0.32	-0.5
4,436,930	+		DZA65_RS20565	0.32	-1.5
4,436,930	+		DZA65_RS20565	0.32	+0.3
4,436,931	-		DZA65_RS20565	0.32	+0.7
4,436,931	-		DZA65_RS20565	0.32	-1.9
4,436,932	+		DZA65_RS20565	0.32	-0.5
4,436,959	+		DZA65_RS20565	0.34	-0.2
4,436,959	+		DZA65_RS20565	0.34	+0.4
4,436,959	+		DZA65_RS20565	0.34	+1.5
4,436,959	+		DZA65_RS20565	0.34	-0.9
4,436,959	+		DZA65_RS20565	0.34	+1.5
4,436,959	+		DZA65_RS20565	0.34	+0.8
4,436,959	+		DZA65_RS20565	0.34	-0.1
4,436,959	+		DZA65_RS20565	0.34	+0.1
4,436,959	+		DZA65_RS20565	0.34	+0.6
4,436,959	+		DZA65_RS20565	0.34	+0.1
4,436,960	-		DZA65_RS20565	0.34	-0.3
4,436,960	-		DZA65_RS20565	0.34	-2.0
4,436,960	-		DZA65_RS20565	0.34	-0.1
4,436,963	-		DZA65_RS20565	0.34	-1.7
4,436,963	-		DZA65_RS20565	0.34	-0.9
4,436,995	+		DZA65_RS20565	0.36	-0.3
4,436,995	+		DZA65_RS20565	0.36	+1.3
4,436,996	-		DZA65_RS20565	0.36	+0.3
4,436,996	-		DZA65_RS20565	0.36	-1.2
4,436,996	-		DZA65_RS20565	0.36	-0.5
4,436,998	+		DZA65_RS20565	0.36	+1.1
4,436,998	+		DZA65_RS20565	0.36	+0.3
4,436,998	+		DZA65_RS20565	0.36	-0.5
4,436,999	-		DZA65_RS20565	0.36	+0.3
4,436,999	-		DZA65_RS20565	0.36	-1.9
4,436,999	-		DZA65_RS20565	0.36	+1.5
4,437,017	+		DZA65_RS20565	0.37	+0.5
4,437,020	+		DZA65_RS20565	0.38	-0.3
4,437,021	-		DZA65_RS20565	0.38	-0.3
4,437,021	-		DZA65_RS20565	0.38	+0.3
4,437,046	-		DZA65_RS20565	0.39	+0.5
4,437,076	+		DZA65_RS20565	0.41	-0.1
4,437,076	+		DZA65_RS20565	0.41	+0.9
4,437,076	+		DZA65_RS20565	0.41	-0.1
4,437,077	-		DZA65_RS20565	0.41	+0.5
4,437,206	-		DZA65_RS20565	0.49	+0.1
4,437,206	-		DZA65_RS20565	0.49	-0.6
4,437,206	-		DZA65_RS20565	0.49	-1.7
4,437,215	+		DZA65_RS20565	0.49	+0.3
4,437,216	-		DZA65_RS20565	0.50	+1.1
4,437,216	-		DZA65_RS20565	0.50	-1.0
4,437,216	-		DZA65_RS20565	0.50	-0.7
4,437,216	-		DZA65_RS20565	0.50	-2.0
4,437,216	-		DZA65_RS20565	0.50	+0.6
4,437,297	-		DZA65_RS20565	0.54	+0.5
4,437,364	+		DZA65_RS20565	0.59	+1.7
4,437,503	+		DZA65_RS20565	0.67	+1.1
4,437,504	-		DZA65_RS20565	0.67	+0.7
4,437,504	-		DZA65_RS20565	0.67	+0.3
4,437,504	-		DZA65_RS20565	0.67	+0.4
4,437,504	-		DZA65_RS20565	0.67	-0.5
4,437,504	-		DZA65_RS20565	0.67	+2.6
4,437,504	-		DZA65_RS20565	0.67	-1.2
4,437,504	-				+1.3
4,437,508	+		DZA65_RS20565	0.67	+0.1
4,437,509	-		DZA65_RS20565	0.67	+0.3
4,437,509	-		DZA65_RS20565	0.67	+0.5
4,437,544	+		DZA65_RS20565	0.69	-1.0
4,437,544	+		DZA65_RS20565	0.69	+1.4
4,437,544	+		DZA65_RS20565	0.69	+0.7
4,437,545	-		DZA65_RS20565	0.70	-1.0
4,437,545	-		DZA65_RS20565	0.70	+0.4
4,437,545	-		DZA65_RS20565	0.70	-1.5
4,437,545	-		DZA65_RS20565	0.70	-2.2
4,437,545	-		DZA65_RS20565	0.70	-1.3
4,437,569	+		DZA65_RS20565	0.71	-0.0
4,437,570	-		DZA65_RS20565	0.71	+0.6
4,437,570	-		DZA65_RS20565	0.71	-0.2
4,437,572	+		DZA65_RS20565	0.71	-0.9
4,437,573	-		DZA65_RS20565	0.71	+0.1
4,437,573	-		DZA65_RS20565	0.71	+0.8
4,437,573	-		DZA65_RS20565	0.71	-0.7
4,437,655	-		DZA65_RS20565	0.76	-0.3
4,437,661	+		DZA65_RS20565	0.77	-0.3
4,437,661	+		DZA65_RS20565	0.77	-0.9
4,437,661	+		DZA65_RS20565	0.77	-1.9
4,437,661	+		DZA65_RS20565	0.77	-0.9
4,437,661	+		DZA65_RS20565	0.77	+1.2
4,437,662	-		DZA65_RS20565	0.77	-0.1
4,437,662	-		DZA65_RS20565	0.77	+0.4
4,437,665	+		DZA65_RS20565	0.77	+0.9
4,437,665	+		DZA65_RS20565	0.77	-1.0
4,437,666	-		DZA65_RS20565	0.77	-0.6
4,437,666	-		DZA65_RS20565	0.77	-0.4
4,437,666	-		DZA65_RS20565	0.77	-0.9
4,437,670	+		DZA65_RS20565	0.77	+1.1
4,437,673	+		DZA65_RS20565	0.77	+0.9
4,437,673	+		DZA65_RS20565	0.77	-1.3
4,437,674	-		DZA65_RS20565	0.77	-0.8
4,437,674	-		DZA65_RS20565	0.77	+1.3
4,437,674	-				-1.2
4,437,687	+		DZA65_RS20565	0.78	-1.2
4,437,687	+		DZA65_RS20565	0.78	-1.5
4,437,687	+		DZA65_RS20565	0.78	+2.3
4,437,688	-		DZA65_RS20565	0.78	-0.2
4,437,688	-		DZA65_RS20565	0.78	-0.5
4,437,688	-		DZA65_RS20565	0.78	-1.7
4,437,688	-		DZA65_RS20565	0.78	+0.7
4,437,692	+		DZA65_RS20565	0.78	-0.9
4,437,692	+		DZA65_RS20565	0.78	-0.3
4,437,692	+		DZA65_RS20565	0.78	-0.4
4,437,692	+		DZA65_RS20565	0.78	+0.5
4,437,692	+		DZA65_RS20565	0.78	+1.5
4,437,692	+		DZA65_RS20565	0.78	+0.2
4,437,693	-		DZA65_RS20565	0.79	+1.1
4,437,693	-		DZA65_RS20565	0.79	-0.2
4,437,693	-		DZA65_RS20565	0.79	-0.6
4,437,693	-		DZA65_RS20565	0.79	-0.6
4,437,693	-		DZA65_RS20565	0.79	-0.9
4,437,693	-		DZA65_RS20565	0.79	-0.7
4,437,693	-		DZA65_RS20565	0.79	+0.2
4,437,694	+		DZA65_RS20565	0.79	-0.5
4,437,695	-		DZA65_RS20565	0.79	+1.5
4,437,695	-		DZA65_RS20565	0.79	-1.5
4,437,695	-		DZA65_RS20565	0.79	-1.3
4,437,736	+		DZA65_RS20565	0.81	-0.9
4,437,743	-		DZA65_RS20565	0.82	+0.4
4,437,758	+		DZA65_RS20565	0.82	+1.1
4,437,758	+		DZA65_RS20565	0.82	+0.9
4,437,759	-		DZA65_RS20565	0.83	+1.1
4,437,800	+		DZA65_RS20565	0.85	-0.6
4,437,800	+		DZA65_RS20565	0.85	+0.5
4,437,800	+		DZA65_RS20565	0.85	+2.1
4,437,800	+		DZA65_RS20565	0.85	-1.2
4,437,800	+		DZA65_RS20565	0.85	-0.2
4,437,800	+		DZA65_RS20565	0.85	+0.1
4,437,801	-		DZA65_RS20565	0.85	+0.5
4,437,801	-		DZA65_RS20565	0.85	+0.5
4,437,801	-		DZA65_RS20565	0.85	-1.7
4,437,801	-				-1.5
4,437,962	-				+1.1
4,437,979	+				+1.6
4,437,979	+				+0.1
4,437,979	+				-0.2
4,437,998	+				-0.9
4,437,999	-				+1.9
4,437,999	-				+3.4
4,437,999	-				-0.5
4,438,016	-				-0.8
4,438,016	-				+0.1
4,438,016	-				+0.4
4,438,068	+				-2.6
4,438,068	+				+0.1
4,438,068	+				-1.2
4,438,068	+				+1.1
4,438,068	+				-1.5
4,438,068	+				+1.5
4,438,069	-				-1.2
4,438,069	-				-0.2
4,438,069	-				+2.0
4,438,069	-				-0.1
4,438,069	-				+0.5
4,438,069	-				+2.3
4,438,069	-				+0.1
4,438,076	+				-0.5
4,438,076	+				-3.0
4,438,077	-				+1.1
4,438,088	+				+0.9
4,438,114	+		DZA65_RS20570	0.11	+0.7
4,438,114	+		DZA65_RS20570	0.11	+0.1
4,438,114	+		DZA65_RS20570	0.11	+1.4
4,438,114	+		DZA65_RS20570	0.11	-0.9
4,438,115	-		DZA65_RS20570	0.11	-2.2
4,438,115	-		DZA65_RS20570	0.11	+0.1
4,438,115	-		DZA65_RS20570	0.11	-1.0
4,438,115	-		DZA65_RS20570	0.11	-0.9
4,438,115	-		DZA65_RS20570	0.11	-2.2
4,438,175	-		DZA65_RS20570	0.20	-0.9
4,438,175	-		DZA65_RS20570	0.20	+0.3
4,438,252	+		DZA65_RS20570	0.31	-0.5
4,438,268	+		DZA65_RS20570	0.34	-0.0
4,438,268	+		DZA65_RS20570	0.34	+2.1
4,438,269	-		DZA65_RS20570	0.34	-0.0
4,438,333	+		DZA65_RS20570	0.43	+0.6
4,438,333	+		DZA65_RS20570	0.43	-0.5
4,438,333	+		DZA65_RS20570	0.43	+0.1
4,438,333	+		DZA65_RS20570	0.43	+0.4
4,438,333	+		DZA65_RS20570	0.43	+1.1
4,438,333	+		DZA65_RS20570	0.43	+0.3
4,438,333	+		DZA65_RS20570	0.43	-0.5
4,438,333	+		DZA65_RS20570	0.43	-1.2
4,438,333	+		DZA65_RS20570	0.43	-1.2
4,438,333	+		DZA65_RS20570	0.43	-1.3
4,438,333	+		DZA65_RS20570	0.43	-2.6
4,438,334	-		DZA65_RS20570	0.44	-0.9
4,438,334	-		DZA65_RS20570	0.44	+2.1
4,438,334	-		DZA65_RS20570	0.44	-1.7
4,438,334	-		DZA65_RS20570	0.44	-2.3
4,438,334	-		DZA65_RS20570	0.44	-0.4
4,438,334	-		DZA65_RS20570	0.44	+0.7
4,438,334	-		DZA65_RS20570	0.44	-0.9
4,438,334	-		DZA65_RS20570	0.44	-1.1
4,438,334	-		DZA65_RS20570	0.44	-0.2
4,438,340	+		DZA65_RS20570	0.45	-0.5
4,438,340	+		DZA65_RS20570	0.45	+0.9
4,438,340	+		DZA65_RS20570	0.45	-1.2
4,438,340	+				+0.1
4,438,341	-		DZA65_RS20570	0.45	-1.0
4,438,341	-		DZA65_RS20570	0.45	+0.4
4,438,341	-		DZA65_RS20570	0.45	+0.4
4,438,427	+		DZA65_RS20570	0.58	-0.7
4,438,476	+		DZA65_RS20570	0.65	+0.1
4,438,547	+		DZA65_RS20570	0.75	-0.9
4,438,547	+		DZA65_RS20570	0.75	+0.1
4,438,547	+		DZA65_RS20570	0.75	-1.3
4,438,548	-		DZA65_RS20570	0.76	-2.2
4,438,548	-		DZA65_RS20570	0.76	+0.1
4,438,576	+		DZA65_RS20570	0.80	+0.3
4,438,576	+		DZA65_RS20570	0.80	-2.8
4,438,577	-		DZA65_RS20570	0.80	-0.3
4,438,577	-		DZA65_RS20570	0.80	+1.5
4,438,577	-		DZA65_RS20570	0.80	+0.3
4,438,577	-		DZA65_RS20570	0.80	-0.9
4,438,577	-		DZA65_RS20570	0.80	-0.2
4,438,577	-		DZA65_RS20570	0.80	-2.9
4,438,577	-		DZA65_RS20570	0.80	+0.7
4,438,620	+		DZA65_RS20570	0.86	+0.5
4,438,620	+		DZA65_RS20570	0.86	+0.0
4,438,620	+		DZA65_RS20570	0.86	+1.1
4,438,659	+				+0.1
4,438,659	+				+1.1
4,438,660	-				+0.5
4,438,660	-				-0.5
4,438,681	+				-1.2
4,438,681	+				-0.3
4,438,682	-				-0.6
4,438,682	-				-0.7
4,438,814	+				-1.5
4,438,814	+				-0.9
4,438,814	+				-1.2
4,438,814	+				-0.7
4,438,814	+				+0.8
4,438,815	-				-2.3
4,438,815	-				+1.0
4,438,815	-				-1.2
4,438,815	-				-0.5
4,438,957	+		DZA65_RS20575	0.22	+0.5
4,438,957	+		DZA65_RS20575	0.22	+1.1
4,438,988	-		DZA65_RS20575	0.25	+0.8
4,439,014	+		DZA65_RS20575	0.27	-0.9
4,439,014	+		DZA65_RS20575	0.27	+1.5
4,439,014	+		DZA65_RS20575	0.27	-1.2
4,439,015	-		DZA65_RS20575	0.27	+0.1
4,439,015	-		DZA65_RS20575	0.27	-0.6
4,439,015	-		DZA65_RS20575	0.27	+0.3