Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19310 and DZA65_RS19315 are separated by 64 nucleotides DZA65_RS19315 and DZA65_RS19320 are separated by 64 nucleotides DZA65_RS19320 and DZA65_RS19325 are separated by 186 nucleotides
DZA65_RS19310: DZA65_RS19310 - RNA polymerase-associated protein RapA, at 4,174,136 to 4,177,081
_RS19310
DZA65_RS19315: DZA65_RS19315 - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 4,177,146 to 4,177,799
_RS19315
DZA65_RS19320: DZA65_RS19320 - co-chaperone DjlA, at 4,177,864 to 4,178,910
_RS19320
DZA65_RS19325: DZA65_RS19325 - LPS assembly protein LptD, at 4,179,097 to 4,181,472
_RS19325
Position (kb) 4177
4178
4179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4177.079 kb on + strand at 4177.080 kb on - strand at 4177.080 kb on - strand at 4177.097 kb on + strand at 4177.097 kb on + strand at 4177.097 kb on + strand at 4177.097 kb on + strand at 4177.097 kb on + strand at 4177.098 kb on - strand at 4177.098 kb on - strand at 4177.100 kb on + strand at 4177.100 kb on + strand at 4177.100 kb on + strand at 4177.101 kb on - strand at 4177.101 kb on - strand at 4177.155 kb on + strand at 4177.155 kb on + strand at 4177.155 kb on + strand at 4177.155 kb on + strand at 4177.155 kb on + strand at 4177.155 kb on + strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.181 kb on - strand at 4177.191 kb on + strand at 4177.191 kb on + strand at 4177.425 kb on + strand, within DZA65_RS19315 at 4177.471 kb on + strand, within DZA65_RS19315 at 4177.471 kb on + strand, within DZA65_RS19315 at 4177.472 kb on - strand, within DZA65_RS19315 at 4177.472 kb on - strand, within DZA65_RS19315 at 4177.556 kb on + strand, within DZA65_RS19315 at 4177.557 kb on - strand, within DZA65_RS19315 at 4177.557 kb on - strand, within DZA65_RS19315 at 4177.557 kb on - strand, within DZA65_RS19315 at 4177.630 kb on + strand, within DZA65_RS19315 at 4177.681 kb on - strand, within DZA65_RS19315 at 4177.681 kb on - strand, within DZA65_RS19315 at 4177.761 kb on - strand at 4177.887 kb on + strand at 4177.923 kb on + strand at 4177.923 kb on + strand at 4177.923 kb on + strand at 4177.924 kb on - strand at 4177.955 kb on - strand at 4178.001 kb on + strand, within DZA65_RS19320 at 4178.002 kb on - strand, within DZA65_RS19320 at 4178.002 kb on - strand, within DZA65_RS19320 at 4178.006 kb on + strand, within DZA65_RS19320 at 4178.112 kb on - strand, within DZA65_RS19320 at 4178.147 kb on + strand, within DZA65_RS19320 at 4178.148 kb on - strand, within DZA65_RS19320 at 4178.222 kb on + strand, within DZA65_RS19320 at 4178.222 kb on + strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.318 kb on + strand, within DZA65_RS19320 at 4178.318 kb on + strand, within DZA65_RS19320 at 4178.318 kb on + strand, within DZA65_RS19320 at 4178.318 kb on + strand, within DZA65_RS19320 at 4178.319 kb on - strand, within DZA65_RS19320 at 4178.319 kb on - strand, within DZA65_RS19320 at 4178.319 kb on - strand, within DZA65_RS19320 at 4178.386 kb on - strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.445 kb on - strand, within DZA65_RS19320 at 4178.445 kb on - strand, within DZA65_RS19320 at 4178.445 kb on - strand, within DZA65_RS19320 at 4178.445 kb on - strand, within DZA65_RS19320 at 4178.497 kb on + strand, within DZA65_RS19320 at 4178.541 kb on + strand, within DZA65_RS19320 at 4178.541 kb on + strand, within DZA65_RS19320 at 4178.910 kb on + strand at 4178.910 kb on + strand at 4178.911 kb on - strand at 4178.911 kb on - strand at 4178.911 kb on - strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.951 kb on + strand at 4178.951 kb on + strand at 4178.951 kb on + strand at 4178.952 kb on - strand at 4178.952 kb on - strand at 4178.967 kb on + strand at 4178.967 kb on + strand at 4178.967 kb on + strand at 4178.968 kb on - strand at 4178.968 kb on - strand at 4178.968 kb on - strand at 4178.980 kb on - strand at 4178.992 kb on + strand at 4179.037 kb on + strand at 4179.037 kb on + strand at 4179.037 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 4,177,079 + -1.7 4,177,080 - +0.7 4,177,080 - -0.9 4,177,097 + +0.1 4,177,097 + +0.6 4,177,097 + -1.2 4,177,097 + +0.3 4,177,097 + +0.1 4,177,098 - +0.7 4,177,098 - +0.1 4,177,100 + -0.9 4,177,100 + +0.6 4,177,100 + -0.2 4,177,101 - +0.5 4,177,101 - -1.5 4,177,155 + -1.7 4,177,155 + +0.7 4,177,155 + +1.1 4,177,155 + +0.5 4,177,155 + +0.3 4,177,155 + -0.2 4,177,156 - -2.1 4,177,156 - -1.2 4,177,156 - +0.1 4,177,156 - -0.6 4,177,156 - +0.3 4,177,156 - -1.5 4,177,156 - -0.3 4,177,156 - -0.3 4,177,181 - -1.6 4,177,191 + -1.3 4,177,191 + +1.3 4,177,425 + DZA65_RS19315 0.43 +0.3 4,177,471 + DZA65_RS19315 0.50 -0.6 4,177,471 + DZA65_RS19315 0.50 -0.2 4,177,472 - DZA65_RS19315 0.50 +1.1 4,177,472 - DZA65_RS19315 0.50 +0.1 4,177,556 + DZA65_RS19315 0.63 -0.7 4,177,557 - DZA65_RS19315 0.63 -0.6 4,177,557 - DZA65_RS19315 0.63 +0.5 4,177,557 - DZA65_RS19315 0.63 +0.1 4,177,630 + DZA65_RS19315 0.74 +0.1 4,177,681 - DZA65_RS19315 0.82 -2.6 4,177,681 - DZA65_RS19315 0.82 +0.1 4,177,761 - +0.1 4,177,887 + -1.9 4,177,923 + -0.9 4,177,923 + -0.8 4,177,923 + -0.1 4,177,924 - -0.1 4,177,955 - -0.7 4,178,001 + DZA65_RS19320 0.13 -0.4 4,178,002 - DZA65_RS19320 0.13 -1.9 4,178,002 - DZA65_RS19320 0.13 -0.1 4,178,006 + DZA65_RS19320 0.14 +1.6 4,178,112 - DZA65_RS19320 0.24 +0.6 4,178,147 + DZA65_RS19320 0.27 -0.3 4,178,148 - DZA65_RS19320 0.27 -0.9 4,178,222 + DZA65_RS19320 0.34 +0.4 4,178,222 + DZA65_RS19320 0.34 -0.8 4,178,223 - DZA65_RS19320 0.34 -1.5 4,178,223 - DZA65_RS19320 0.34 +0.1 4,178,223 - DZA65_RS19320 0.34 -2.1 4,178,223 - DZA65_RS19320 0.34 +0.1 4,178,223 - DZA65_RS19320 0.34 +1.1 4,178,223 - DZA65_RS19320 0.34 -0.7 4,178,318 + DZA65_RS19320 0.43 -1.3 4,178,318 + DZA65_RS19320 0.43 +0.1 4,178,318 + DZA65_RS19320 0.43 -0.2 4,178,318 + DZA65_RS19320 0.43 -0.7 4,178,319 - DZA65_RS19320 0.43 -0.3 4,178,319 - DZA65_RS19320 0.43 -0.2 4,178,319 - DZA65_RS19320 0.43 -0.3 4,178,386 - DZA65_RS19320 0.50 -1.4 4,178,444 + DZA65_RS19320 0.55 +0.3 4,178,444 + DZA65_RS19320 0.55 +0.5 4,178,444 + DZA65_RS19320 0.55 +0.1 4,178,444 + DZA65_RS19320 0.55 -1.7 4,178,444 + DZA65_RS19320 0.55 -1.7 4,178,444 + DZA65_RS19320 0.55 +1.6 4,178,444 + DZA65_RS19320 0.55 -0.9 4,178,445 - DZA65_RS19320 0.55 -1.5 4,178,445 - DZA65_RS19320 0.55 -1.3 4,178,445 - DZA65_RS19320 0.55 -0.9 4,178,445 - DZA65_RS19320 0.55 +0.1 4,178,497 + DZA65_RS19320 0.60 +0.7 4,178,541 + DZA65_RS19320 0.65 -0.4 4,178,541 + DZA65_RS19320 0.65 -0.9 4,178,910 + -0.9 4,178,910 + -1.3 4,178,911 - +0.7 4,178,911 - -1.1 4,178,911 - -1.0 4,178,912 + +2.1 4,178,912 + +0.1 4,178,912 + -1.6 4,178,912 + -0.3 4,178,912 + -1.6 4,178,912 + -0.7 4,178,912 + -0.7 4,178,912 + -0.3 4,178,912 + -1.9 4,178,913 - -0.9 4,178,913 - +0.1 4,178,913 - -0.5 4,178,913 - +1.2 4,178,913 - +1.3 4,178,913 - -0.5 4,178,913 - -2.8 4,178,913 - -0.9 4,178,913 - -0.4 4,178,913 - -1.3 4,178,913 - -0.7 4,178,913 - -1.3 4,178,913 - +0.9 4,178,913 - +1.4 4,178,913 - -1.3 4,178,913 - +0.3 4,178,913 - -0.3 4,178,913 - -0.4 4,178,913 - -2.1 4,178,913 - -0.8 4,178,951 + -0.9 4,178,951 + -0.9 4,178,951 + -1.4 4,178,952 - -1.9 4,178,952 - +0.1 4,178,967 + -1.5 4,178,967 + +0.5 4,178,967 + +1.1 4,178,968 - -2.4 4,178,968 - -2.5 4,178,968 - -0.9 4,178,980 - +0.1 4,178,992 + +1.5 4,179,037 + -0.0 4,179,037 + +0.1 4,179,037 + +2.1 4,179,039 + -2.4 4,179,039 + -2.4 4,179,039 + +0.5 4,179,039 + +0.4 4,179,039 + +0.8 4,179,039 + -1.2 4,179,039 + -0.0
Or see this region's nucleotide sequence