Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19200

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,150,757	+		DZA65_RS19190	0.69	-0.2
4,150,757	+		DZA65_RS19190	0.69	-1.3
4,150,757	+		DZA65_RS19190	0.69	-2.1
4,150,757	+		DZA65_RS19190	0.69	-0.8
4,150,758	-		DZA65_RS19190	0.69	-1.3
4,150,759	+		DZA65_RS19190	0.69	+0.1
4,150,759	+		DZA65_RS19190	0.69	-0.3
4,150,759	+		DZA65_RS19190	0.69	-0.0
4,150,759	+		DZA65_RS19190	0.69	-0.3
4,150,759	+		DZA65_RS19190	0.69	+0.8
4,150,759	+		DZA65_RS19190	0.69	-0.9
4,150,759	+		DZA65_RS19190	0.69	-0.5
4,150,759	+		DZA65_RS19190	0.69	+1.1
4,150,759	+		DZA65_RS19190	0.69	-0.8
4,150,760	-		DZA65_RS19190	0.69	+0.9
4,150,760	-		DZA65_RS19190	0.69	+1.1
4,150,760	-		DZA65_RS19190	0.69	-1.3
4,150,760	-		DZA65_RS19190	0.69	+0.1
4,150,760	-		DZA65_RS19190	0.69	+1.1
4,150,760	-		DZA65_RS19190	0.69	+0.7
4,150,760	-		DZA65_RS19190	0.69	-0.7
4,150,760	-		DZA65_RS19190	0.69	-0.4
4,150,760	-		DZA65_RS19190	0.69	+2.9
4,151,012	+		DZA65_RS19190	0.83	+0.5
4,151,012	+		DZA65_RS19190	0.83	-0.2
4,151,044	+		DZA65_RS19190	0.84	+0.2
4,151,044	+		DZA65_RS19190	0.84	-1.6
4,151,102	+				+0.1
4,151,102	+		DZA65_RS19190	0.88	+1.5
4,151,103	-		DZA65_RS19190	0.88	+1.1
4,151,299	+				+0.9
4,151,299	+				+0.2
4,151,299	+				-0.3
4,151,299	+				-0.0
4,151,300	-				+0.1
4,151,300	-				+0.5
4,151,353	+				+1.1
4,151,354	-				+1.3
4,151,354	-				+1.4
4,151,355	+				-0.3
4,151,355	+				-1.1
4,151,381	+				+0.7
4,151,443	+				+2.4
4,151,444	-				-0.8
4,151,444	-				-0.9
4,151,468	+				+0.6
4,151,469	-				-1.1
4,151,506	+				-0.8
4,151,506	+				-0.7
4,151,506	+				-0.9
4,151,507	-				+0.1
4,151,512	+				+0.5
4,151,512	+				+0.7
4,151,512	+				-0.8
4,151,513	-				-0.7
4,151,513	-				-0.5
4,151,576	+		DZA65_RS19195	0.23	-0.8
4,151,577	-		DZA65_RS19195	0.24	+0.3
4,151,585	+		DZA65_RS19195	0.33	-1.1
4,151,586	-		DZA65_RS19195	0.35	+0.8
4,151,586	-		DZA65_RS19195	0.35	-0.9
4,151,586	-		DZA65_RS19195	0.35	+1.1
4,151,588	+		DZA65_RS19195	0.37	+0.7
4,151,588	+		DZA65_RS19195	0.37	-0.5
4,151,588	+		DZA65_RS19195	0.37	+0.4
4,151,589	-		DZA65_RS19195	0.38	+0.7
4,151,589	-		DZA65_RS19195	0.38	+0.7
4,151,591	+		DZA65_RS19195	0.40	-2.3
4,151,591	+		DZA65_RS19195	0.40	+1.1
4,151,658	+				-0.1
4,151,659	-				-0.4
4,151,659	-				+1.1
4,151,659	-				+1.1
4,151,660	+				-0.3
4,151,660	+				+0.1
4,151,660	+				-0.3
4,151,660	+				-0.0
4,151,661	-				-0.5
4,151,661	-				+0.8
4,151,749	+				-0.9
4,151,750	-				-0.3
4,151,750	-				+2.3
4,151,750	-				+0.1
4,151,752	+				-1.2
4,151,752	+				-0.9
4,151,752	+				-0.5
4,151,752	+				+2.1
4,151,753	-				-2.1
4,151,753	-				-0.7
4,151,753	-				+0.1
4,151,907	+		DZA65_RS19200	0.11	-0.3
4,151,907	+		DZA65_RS19200	0.11	-0.3
4,151,907	+		DZA65_RS19200	0.11	+0.2
4,151,907	+		DZA65_RS19200	0.11	+0.8
4,151,927	-		DZA65_RS19200	0.12	-0.8
4,151,935	+		DZA65_RS19200	0.13	-0.7
4,151,936	-		DZA65_RS19200	0.13	+0.2
4,151,975	-		DZA65_RS19200	0.15	-0.5
4,152,104	+		DZA65_RS19200	0.23	-0.2
4,152,104	+		DZA65_RS19200	0.23	+1.2
4,152,104	+		DZA65_RS19200	0.23	+0.5
4,152,104	+		DZA65_RS19200	0.23	+0.2
4,152,104	+		DZA65_RS19200	0.23	-0.8
4,152,104	+		DZA65_RS19200	0.23	-0.3
4,152,104	+		DZA65_RS19200	0.23	-2.4
4,152,104	+		DZA65_RS19200	0.23	+0.1
4,152,104	+		DZA65_RS19200	0.23	+1.1
4,152,104	+		DZA65_RS19200	0.23	-0.5
4,152,104	+		DZA65_RS19200	0.23	-1.3
4,152,104	+		DZA65_RS19200	0.23	-0.9
4,152,105	-		DZA65_RS19200	0.23	-0.9
4,152,105	-		DZA65_RS19200	0.23	+0.1
4,152,105	-		DZA65_RS19200	0.23	-1.1
4,152,105	-		DZA65_RS19200	0.23	-0.5
4,152,105	-		DZA65_RS19200	0.23	-1.0
4,152,105	-		DZA65_RS19200	0.23	-0.1
4,152,105	-		DZA65_RS19200	0.23	+0.6
4,152,105	-		DZA65_RS19200	0.23	-1.6
4,152,105	-		DZA65_RS19200	0.23	+1.1
4,152,105	-		DZA65_RS19200	0.23	+0.1
4,152,105	-		DZA65_RS19200	0.23	-0.3
4,152,125	-		DZA65_RS19200	0.25	-1.3
4,152,128	+		DZA65_RS19200	0.25	+0.5
4,152,128	+		DZA65_RS19200	0.25	-2.1
4,152,129	-		DZA65_RS19200	0.25	-1.2
4,152,198	+		DZA65_RS19200	0.29	-1.5
4,152,198	+		DZA65_RS19200	0.29	+0.1
4,152,198	+		DZA65_RS19200	0.29	-2.8
4,152,198	+		DZA65_RS19200	0.29	-0.5
4,152,199	-		DZA65_RS19200	0.29	-0.2
4,152,199	-		DZA65_RS19200	0.29	-0.3
4,152,199	-		DZA65_RS19200	0.29	-0.5
4,152,199	-		DZA65_RS19200	0.29	-0.9
4,152,199	-		DZA65_RS19200	0.29	+0.1
4,152,199	-		DZA65_RS19200	0.29	-1.3
4,152,199	-		DZA65_RS19200	0.29	-0.6
4,152,254	+		DZA65_RS19200	0.33	-0.6
4,152,255	-		DZA65_RS19200	0.33	-2.5
4,152,255	-		DZA65_RS19200	0.33	+1.3
4,152,296	+		DZA65_RS19200	0.36	+0.3
4,152,296	+		DZA65_RS19200	0.36	-0.6
4,152,296	+		DZA65_RS19200	0.36	-1.1
4,152,297	-		DZA65_RS19200	0.36	-0.5
4,152,297	-		DZA65_RS19200	0.36	+1.1
4,152,297	-		DZA65_RS19200	0.36	+0.3
4,152,319	+		DZA65_RS19200	0.37	+0.5
4,152,328	+		DZA65_RS19200	0.38	-0.3
4,152,329	-		DZA65_RS19200	0.38	+1.4
4,152,329	-		DZA65_RS19200	0.38	+0.1
4,152,388	-		DZA65_RS19200	0.41	-0.3
4,152,388	-		DZA65_RS19200	0.41	+0.3
4,152,476	-		DZA65_RS19200	0.47	+0.2
4,152,534	-		DZA65_RS19200	0.51	-0.5
4,152,604	+		DZA65_RS19200	0.55	-0.0
4,152,605	-		DZA65_RS19200	0.55	+0.2
4,152,605	-		DZA65_RS19200	0.55	-0.2
4,152,770	+		DZA65_RS19200	0.66	-0.8
4,152,770	+		DZA65_RS19200	0.66	-0.5
4,152,770	+		DZA65_RS19200	0.66	-0.2
4,152,771	-		DZA65_RS19200	0.66	-1.2
4,152,771	-		DZA65_RS19200	0.66	+0.5
4,152,772	+		DZA65_RS19200	0.66	-0.9
4,152,772	+		DZA65_RS19200	0.66	-0.2
4,152,772	+		DZA65_RS19200	0.66	-0.2
4,152,772	+		DZA65_RS19200	0.66	+0.1
4,152,772	+		DZA65_RS19200	0.66	-0.2
4,152,772	+		DZA65_RS19200	0.66	-0.4
4,152,772	+		DZA65_RS19200	0.66	-0.8
4,152,772	+		DZA65_RS19200	0.66	+0.4
4,152,772	+		DZA65_RS19200	0.66	-0.5
4,152,772	+		DZA65_RS19200	0.66	-1.8
4,152,772	+		DZA65_RS19200	0.66	+0.4
4,152,772	+		DZA65_RS19200	0.66	-0.7
4,152,772	+		DZA65_RS19200	0.66	+1.1
4,152,772	+		DZA65_RS19200	0.66	-0.5
4,152,773	-		DZA65_RS19200	0.66	-0.5
4,152,773	-		DZA65_RS19200	0.66	-0.3
4,152,773	-		DZA65_RS19200	0.66	+0.1
4,152,773	-		DZA65_RS19200	0.66	-1.9
4,152,773	-		DZA65_RS19200	0.66	-0.9
4,152,773	-		DZA65_RS19200	0.66	-0.4
4,152,773	-		DZA65_RS19200	0.66	-1.8
4,152,773	-		DZA65_RS19200	0.66	+0.8
4,152,786	-		DZA65_RS19200	0.67	+0.1
4,152,797	-		DZA65_RS19200	0.67	+2.1
4,152,803	+		DZA65_RS19200	0.68	+0.2
4,152,803	+		DZA65_RS19200	0.68	+0.7
4,152,851	+		DZA65_RS19200	0.71	-0.2
4,152,851	+		DZA65_RS19200	0.71	+3.1
4,152,852	-		DZA65_RS19200	0.71	+2.1
4,152,852	-		DZA65_RS19200	0.71	-2.1
4,152,852	-		DZA65_RS19200	0.71	+0.1
4,152,852	-		DZA65_RS19200	0.71	-0.6
4,152,852	-		DZA65_RS19200	0.71	+0.9
4,152,917	+		DZA65_RS19200	0.75	+0.3
4,152,917	+		DZA65_RS19200	0.75	+0.6
4,152,923	-		DZA65_RS19200	0.75	+0.2
4,152,923	-		DZA65_RS19200	0.75	-1.5
4,152,940	+		DZA65_RS19200	0.77	-1.9
4,152,940	+		DZA65_RS19200	0.77	-2.4
4,152,940	+		DZA65_RS19200	0.77	+1.4
4,152,940	+		DZA65_RS19200	0.77	+1.9
4,152,941	-		DZA65_RS19200	0.77	-0.4
4,152,941	-		DZA65_RS19200	0.77	-0.5
4,152,941	-		DZA65_RS19200	0.77	+0.2
4,152,941	-		DZA65_RS19200	0.77	-1.3
4,152,941	-		DZA65_RS19200	0.77	-0.8
4,152,941	-		DZA65_RS19200	0.77	-1.5
4,152,952	+		DZA65_RS19200	0.77	-0.2
4,152,952	+		DZA65_RS19200	0.77	+0.1
4,152,953	-		DZA65_RS19200	0.77	-2.4
4,152,953	-		DZA65_RS19200	0.77	+0.1
4,153,020	+		DZA65_RS19200	0.82	+1.1
4,153,031	+		DZA65_RS19200	0.82	+0.2
4,153,031	+		DZA65_RS19200	0.82	-0.5
4,153,031	+		DZA65_RS19200	0.82	-0.3
4,153,032	-		DZA65_RS19200	0.82	+0.6
4,153,032	-		DZA65_RS19200	0.82	+0.8
4,153,032	-		DZA65_RS19200	0.82	-1.1
4,153,079	+		DZA65_RS19200	0.85	+1.6
4,153,080	-		DZA65_RS19200	0.85	+2.1
4,153,080	-		DZA65_RS19200	0.85	-0.9
4,153,080	-		DZA65_RS19200	0.85	-0.9
4,153,105	+		DZA65_RS19200	0.87	+0.4
4,153,105	+		DZA65_RS19200	0.87	+0.5
4,153,105	+		DZA65_RS19200	0.87	-0.5
4,153,106	-		DZA65_RS19200	0.87	+0.1
4,153,106	-		DZA65_RS19200	0.87	+0.8
4,153,106	-		DZA65_RS19200	0.87	-0.0
4,153,143	-		DZA65_RS19200	0.89	+1.4
4,153,218	+				+1.1
4,153,218	+				+1.1
4,153,218	+				-0.5
4,153,218	+				+3.4
4,153,218	+				+0.4
4,153,218	+				+1.5
4,153,218	+				-1.8
4,153,219	-				+0.6
4,153,219	-				+0.2
4,153,219	-				+0.5
4,153,219	-				+1.8
4,153,219	-				-0.3
4,153,219	-				-0.8
4,153,219	-				+0.1
4,153,219	-				+1.1
4,153,221	+				-1.3
4,153,221	+				-0.9
4,153,221	+				-0.5
4,153,222	-				+0.6
4,153,222	-				+0.9
4,153,222	-				-0.3
4,153,222	-				-1.0
4,153,321	+				+2.1
4,153,321	+				-0.5
4,153,321	+				-1.0
4,153,321	+				-0.9
4,153,321	+				-1.6
4,153,321	+				-0.3
4,153,321	+				-0.1
4,153,322	-				+1.4
4,153,322	-				-0.5
4,153,322	-				-0.5
4,153,322	-				-0.4
4,153,326	+				-0.3
4,153,326	+				+1.3
4,153,327	-				-1.3
4,153,364	+				+0.2
4,153,364	+				-0.5
4,153,364	+				+0.2
4,153,365	-				-0.7
4,153,365	-				+0.7
4,153,365	-				-1.0
4,153,365	-				+1.3
4,153,378	+				+0.1
4,153,378	+				-0.1
4,153,378	+				+1.1
4,153,378	+				-0.9
4,153,378	+				-0.1
4,153,379	-				-0.5
4,153,379	-				+0.3
4,153,379	-				+1.1
4,153,380	+				-1.3
4,153,380	+				+1.1
4,153,380	+				+1.4
4,153,380	+				+0.6
4,153,380	+				+1.5
4,153,380	+				+0.1
4,153,381	-				+0.1
4,153,381	-				-2.0
4,153,381	-				+0.7
4,153,381	-				+0.6
4,153,381	-				+0.9
4,153,381	-				-0.5
4,153,381	-				-0.5
4,153,385	+				-0.5
4,153,385	+				-2.1
4,153,386	-				-0.5
4,153,386	-				-1.1
4,153,436	-		DZA65_RS19205	0.12	+0.6
4,153,470	+		DZA65_RS19205	0.15	+0.1
4,153,648	+		DZA65_RS19205	0.31	+0.1
4,153,649	-		DZA65_RS19205	0.31	-0.4
4,153,649	-		DZA65_RS19205	0.31	+0.1
4,153,649	-		DZA65_RS19205	0.31	+0.7
4,153,741	+		DZA65_RS19205	0.40	+0.1
4,153,741	+		DZA65_RS19205	0.40	-0.8
4,153,742	-		DZA65_RS19205	0.40	-0.3
4,153,742	-				-0.4
4,153,780	+		DZA65_RS19205	0.43	-0.4
4,153,780	+		DZA65_RS19205	0.43	+1.1
4,153,780	+		DZA65_RS19205	0.43	+1.6
4,153,780	+		DZA65_RS19205	0.43	-0.6
4,153,780	+		DZA65_RS19205	0.43	-0.3
4,153,781	-		DZA65_RS19205	0.43	-0.3
4,153,781	-		DZA65_RS19205	0.43	+2.6
4,153,781	-		DZA65_RS19205	0.43	+1.5
4,153,781	-		DZA65_RS19205	0.43	+0.8
4,153,781	-		DZA65_RS19205	0.43	+0.2
4,153,781	-		DZA65_RS19205	0.43	+1.1
4,153,781	-		DZA65_RS19205	0.43	-2.1
4,153,781	-		DZA65_RS19205	0.43	+0.7
4,153,807	+		DZA65_RS19205	0.46	+0.8
4,153,807	+		DZA65_RS19205	0.46	-1.5
4,153,807	+		DZA65_RS19205	0.46	-0.5
4,153,807	+		DZA65_RS19205	0.46	+0.3
4,153,807	+		DZA65_RS19205	0.46	-3.5
4,153,808	-		DZA65_RS19205	0.46	+0.7
4,153,808	-		DZA65_RS19205	0.46	-1.6
4,153,808	-		DZA65_RS19205	0.46	-0.6
4,153,808	-		DZA65_RS19205	0.46	+1.1
4,153,830	+		DZA65_RS19205	0.48	+0.1
4,153,830	+		DZA65_RS19205	0.48	-1.3
4,153,830	+		DZA65_RS19205	0.48	-0.6
4,153,831	-		DZA65_RS19205	0.48	+0.2
4,153,831	-		DZA65_RS19205	0.48	-0.3
4,153,964	+		DZA65_RS19205	0.60	-0.9
4,153,964	+		DZA65_RS19205	0.60	+0.6
4,153,964	+		DZA65_RS19205	0.60	+1.6
4,153,964	+		DZA65_RS19205	0.60	+0.8
4,153,964	+		DZA65_RS19205	0.60	+0.5
4,153,964	+		DZA65_RS19205	0.60	-1.1
4,153,964	+		DZA65_RS19205	0.60	-0.9
4,153,964	+		DZA65_RS19205	0.60	+0.1
4,153,964	+		DZA65_RS19205	0.60	-2.2
4,153,964	+		DZA65_RS19205	0.60	-0.9
4,153,964	+		DZA65_RS19205	0.60	-0.5
4,153,964	+		DZA65_RS19205	0.60	-0.3
4,153,965	-		DZA65_RS19205	0.60	-0.6
4,153,965	-		DZA65_RS19205	0.60	-1.9
4,153,965	-		DZA65_RS19205	0.60	-1.3
4,153,965	-		DZA65_RS19205	0.60	-0.1
4,153,965	-		DZA65_RS19205	0.60	-0.9
4,153,965	-		DZA65_RS19205	0.60	+0.8
4,153,965	-		DZA65_RS19205	0.60	-0.8
4,153,965	-		DZA65_RS19205	0.60	-0.5
4,153,981	+		DZA65_RS19205	0.62	-1.5
4,153,981	+		DZA65_RS19205	0.62	+2.1
4,153,981	+		DZA65_RS19205	0.62	-1.9
4,153,981	+		DZA65_RS19205	0.62	-1.5
4,153,981	+		DZA65_RS19205	0.62	-1.2
4,153,981	+		DZA65_RS19205	0.62	+0.9
4,153,981	+		DZA65_RS19205	0.62	-0.3
4,153,981	+		DZA65_RS19205	0.62	+0.2
4,153,981	+		DZA65_RS19205	0.62	+0.6
4,153,981	+		DZA65_RS19205	0.62	+1.1
4,153,982	-		DZA65_RS19205	0.62	-0.4
4,153,982	-		DZA65_RS19205	0.62	+0.4
4,153,982	-		DZA65_RS19205	0.62	-1.3
4,153,982	-		DZA65_RS19205	0.62	-0.8
4,153,982	-		DZA65_RS19205	0.62	-1.5
4,153,982	-		DZA65_RS19205	0.62	+1.1
4,153,982	-		DZA65_RS19205	0.62	+1.7
4,153,982	-		DZA65_RS19205	0.62	+1.1
4,153,982	-		DZA65_RS19205	0.62	+0.2
4,153,982	-		DZA65_RS19205	0.62	-0.4
4,153,982	-				-2.8
4,153,982	-		DZA65_RS19205	0.62	-1.0
4,153,982	-		DZA65_RS19205	0.62	+0.2
4,153,982	-		DZA65_RS19205	0.62	+0.4
4,153,982	-		DZA65_RS19205	0.62	+1.2
4,153,982	-		DZA65_RS19205	0.62	+0.1
4,153,982	-		DZA65_RS19205	0.62	+0.1
4,154,146	+		DZA65_RS19205	0.77	-0.2
4,154,146	+		DZA65_RS19205	0.77	-0.3
4,154,146	+		DZA65_RS19205	0.77	+1.6
4,154,147	-		DZA65_RS19205	0.77	-0.7