Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS18695 and DZA65_RS18700 are separated by 16 nucleotides DZA65_RS18700 and DZA65_RS18705 overlap by 4 nucleotides
DZA65_RS18695: DZA65_RS18695 - type I-F CRISPR-associated protein Csy3, at 4,026,266 to 4,027,273
_RS18695
DZA65_RS18700: DZA65_RS18700 - type I-F CRISPR-associated protein Csy2, at 4,027,290 to 4,028,243
_RS18700
DZA65_RS18705: DZA65_RS18705 - type I-F CRISPR-associated protein Csy1, at 4,028,240 to 4,029,577
_RS18705
Position (kb) 4027
4028
4029 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.318 kb on + strand at 4026.319 kb on - strand at 4026.319 kb on - strand at 4026.365 kb on - strand at 4026.378 kb on + strand, within DZA65_RS18695 at 4026.378 kb on + strand, within DZA65_RS18695 at 4026.379 kb on - strand, within DZA65_RS18695 at 4026.392 kb on - strand, within DZA65_RS18695 at 4026.552 kb on + strand, within DZA65_RS18695 at 4026.750 kb on + strand, within DZA65_RS18695 at 4026.778 kb on + strand, within DZA65_RS18695 at 4026.794 kb on + strand, within DZA65_RS18695 at 4026.795 kb on - strand, within DZA65_RS18695 at 4026.795 kb on - strand, within DZA65_RS18695 at 4026.904 kb on - strand, within DZA65_RS18695 at 4026.950 kb on - strand, within DZA65_RS18695 at 4026.950 kb on - strand, within DZA65_RS18695 at 4026.950 kb on - strand, within DZA65_RS18695 at 4026.991 kb on + strand, within DZA65_RS18695 at 4026.991 kb on + strand, within DZA65_RS18695 at 4026.991 kb on + strand, within DZA65_RS18695 at 4027.273 kb on + strand at 4027.273 kb on + strand at 4027.279 kb on + strand at 4027.279 kb on + strand at 4027.280 kb on - strand at 4027.280 kb on - strand at 4027.280 kb on - strand at 4027.280 kb on - strand at 4027.280 kb on - strand at 4027.294 kb on + strand at 4027.294 kb on + strand at 4027.295 kb on - strand at 4027.327 kb on - strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.366 kb on + strand at 4027.367 kb on - strand at 4027.367 kb on - strand at 4027.367 kb on - strand at 4027.367 kb on - strand at 4027.367 kb on - strand at 4027.393 kb on + strand, within DZA65_RS18700 at 4027.393 kb on + strand, within DZA65_RS18700 at 4027.462 kb on + strand, within DZA65_RS18700 at 4027.462 kb on + strand, within DZA65_RS18700 at 4027.462 kb on + strand, within DZA65_RS18700 at 4027.462 kb on + strand, within DZA65_RS18700 at 4027.463 kb on - strand, within DZA65_RS18700 at 4027.463 kb on - strand, within DZA65_RS18700 at 4027.463 kb on - strand, within DZA65_RS18700 at 4027.463 kb on - strand, within DZA65_RS18700 at 4027.463 kb on - strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.528 kb on + strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.529 kb on - strand, within DZA65_RS18700 at 4027.574 kb on - strand, within DZA65_RS18700 at 4027.639 kb on + strand, within DZA65_RS18700 at 4027.640 kb on - strand, within DZA65_RS18700 at 4027.640 kb on - strand, within DZA65_RS18700 at 4027.640 kb on - strand, within DZA65_RS18700 at 4027.740 kb on + strand, within DZA65_RS18700 at 4027.741 kb on - strand, within DZA65_RS18700 at 4027.819 kb on - strand, within DZA65_RS18700 at 4028.100 kb on + strand, within DZA65_RS18700 at 4028.101 kb on - strand, within DZA65_RS18700 at 4028.176 kb on + strand at 4028.176 kb on + strand at 4028.176 kb on + strand at 4028.177 kb on - strand at 4028.177 kb on - strand at 4028.177 kb on - strand at 4028.217 kb on - strand at 4028.217 kb on - strand at 4028.217 kb on - strand at 4028.217 kb on - strand at 4028.290 kb on + strand at 4028.290 kb on + strand at 4028.290 kb on + strand at 4028.291 kb on - strand at 4028.306 kb on - strand at 4028.306 kb on - strand at 4028.367 kb on - strand at 4028.482 kb on + strand, within DZA65_RS18705 at 4028.482 kb on + strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.483 kb on - strand, within DZA65_RS18705 at 4028.542 kb on - strand, within DZA65_RS18705 at 4028.542 kb on - strand, within DZA65_RS18705 at 4028.542 kb on - strand, within DZA65_RS18705 at 4028.574 kb on + strand, within DZA65_RS18705 at 4028.574 kb on + strand, within DZA65_RS18705 at 4028.645 kb on - strand, within DZA65_RS18705 at 4028.661 kb on + strand, within DZA65_RS18705 at 4028.661 kb on + strand, within DZA65_RS18705 at 4028.661 kb on + strand, within DZA65_RS18705 at 4028.661 kb on + strand, within DZA65_RS18705 at 4028.662 kb on - strand, within DZA65_RS18705 at 4028.662 kb on - strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.763 kb on + strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.764 kb on - strand, within DZA65_RS18705 at 4028.800 kb on + strand, within DZA65_RS18705 at 4028.801 kb on - strand, within DZA65_RS18705 at 4028.824 kb on + strand, within DZA65_RS18705 at 4028.840 kb on - strand, within DZA65_RS18705 at 4028.840 kb on - strand, within DZA65_RS18705 at 4028.840 kb on - strand, within DZA65_RS18705 at 4028.840 kb on - strand, within DZA65_RS18705 at 4028.847 kb on + strand, within DZA65_RS18705 at 4028.934 kb on - strand, within DZA65_RS18705 at 4028.934 kb on - strand, within DZA65_RS18705 at 4028.970 kb on + strand, within DZA65_RS18705 at 4028.970 kb on + strand, within DZA65_RS18705 at 4028.970 kb on + strand, within DZA65_RS18705 at 4028.970 kb on + strand, within DZA65_RS18705 at 4028.971 kb on - strand, within DZA65_RS18705 at 4028.971 kb on - strand, within DZA65_RS18705 at 4028.981 kb on + strand, within DZA65_RS18705 at 4028.981 kb on + strand, within DZA65_RS18705 at 4028.982 kb on - strand, within DZA65_RS18705 at 4028.982 kb on - strand, within DZA65_RS18705 at 4028.991 kb on + strand, within DZA65_RS18705 at 4028.991 kb on + strand, within DZA65_RS18705 at 4028.991 kb on + strand, within DZA65_RS18705 at 4028.992 kb on - strand, within DZA65_RS18705 at 4028.992 kb on - strand, within DZA65_RS18705 at 4028.992 kb on - strand, within DZA65_RS18705 at 4028.992 kb on - strand, within DZA65_RS18705 at 4028.992 kb on - strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.015 kb on + strand, within DZA65_RS18705 at 4029.016 kb on - strand, within DZA65_RS18705 at 4029.016 kb on - strand, within DZA65_RS18705 at 4029.016 kb on - strand, within DZA65_RS18705 at 4029.025 kb on + strand, within DZA65_RS18705 at 4029.026 kb on - strand, within DZA65_RS18705 at 4029.146 kb on + strand, within DZA65_RS18705 at 4029.146 kb on + strand, within DZA65_RS18705 at 4029.147 kb on - strand, within DZA65_RS18705 at 4029.230 kb on + strand, within DZA65_RS18705 at 4029.231 kb on - strand, within DZA65_RS18705 at 4029.231 kb on - strand, within DZA65_RS18705
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 4,026,318 + +0.3 4,026,318 + +0.5 4,026,318 + -1.6 4,026,318 + +0.3 4,026,318 + -1.6 4,026,318 + -0.2 4,026,318 + -0.6 4,026,318 + +0.7 4,026,318 + -0.2 4,026,318 + -1.4 4,026,318 + -1.8 4,026,318 + +0.8 4,026,318 + +0.2 4,026,318 + +0.9 4,026,319 - -1.6 4,026,319 - +0.6 4,026,365 - -0.6 4,026,378 + DZA65_RS18695 0.11 +1.0 4,026,378 + DZA65_RS18695 0.11 -1.0 4,026,379 - DZA65_RS18695 0.11 +1.5 4,026,392 - DZA65_RS18695 0.12 -0.6 4,026,552 + DZA65_RS18695 0.28 -2.1 4,026,750 + DZA65_RS18695 0.48 +0.4 4,026,778 + DZA65_RS18695 0.51 +1.5 4,026,794 + DZA65_RS18695 0.52 -0.8 4,026,795 - DZA65_RS18695 0.52 -0.6 4,026,795 - DZA65_RS18695 0.52 -0.8 4,026,904 - DZA65_RS18695 0.63 +1.3 4,026,950 - DZA65_RS18695 0.68 -0.3 4,026,950 - DZA65_RS18695 0.68 +0.0 4,026,950 - DZA65_RS18695 0.68 +0.9 4,026,991 + DZA65_RS18695 0.72 +0.4 4,026,991 + DZA65_RS18695 0.72 +0.9 4,026,991 + DZA65_RS18695 0.72 +0.7 4,027,273 + -1.0 4,027,273 + +4.0 4,027,279 + +1.0 4,027,279 + +0.4 4,027,280 - +0.6 4,027,280 - -0.6 4,027,280 - +0.0 4,027,280 - +0.0 4,027,280 - +0.5 4,027,294 + +0.2 4,027,294 + -0.3 4,027,295 - +0.2 4,027,327 - -1.3 4,027,366 + -0.7 4,027,366 + +0.3 4,027,366 + +0.0 4,027,366 + -1.6 4,027,366 + -2.0 4,027,366 + -1.6 4,027,366 + +0.2 4,027,367 - +0.6 4,027,367 - +1.0 4,027,367 - -0.6 4,027,367 - -2.3 4,027,367 - +0.1 4,027,393 + DZA65_RS18700 0.11 -0.6 4,027,393 + DZA65_RS18700 0.11 -1.0 4,027,462 + DZA65_RS18700 0.18 -0.3 4,027,462 + DZA65_RS18700 0.18 -0.6 4,027,462 + DZA65_RS18700 0.18 -0.8 4,027,462 + DZA65_RS18700 0.18 +1.0 4,027,463 - DZA65_RS18700 0.18 -1.0 4,027,463 - DZA65_RS18700 0.18 +2.6 4,027,463 - DZA65_RS18700 0.18 +0.7 4,027,463 - DZA65_RS18700 0.18 -0.2 4,027,463 - DZA65_RS18700 0.18 +0.7 4,027,528 + DZA65_RS18700 0.25 +0.6 4,027,528 + DZA65_RS18700 0.25 +0.2 4,027,528 + DZA65_RS18700 0.25 -2.0 4,027,528 + DZA65_RS18700 0.25 -2.0 4,027,528 + DZA65_RS18700 0.25 -0.5 4,027,528 + DZA65_RS18700 0.25 -0.7 4,027,528 + DZA65_RS18700 0.25 +1.0 4,027,528 + DZA65_RS18700 0.25 +1.0 4,027,528 + DZA65_RS18700 0.25 -1.0 4,027,528 + DZA65_RS18700 0.25 -1.8 4,027,529 - DZA65_RS18700 0.25 -0.7 4,027,529 - DZA65_RS18700 0.25 -2.3 4,027,529 - DZA65_RS18700 0.25 +0.4 4,027,529 - DZA65_RS18700 0.25 -0.8 4,027,529 - DZA65_RS18700 0.25 -0.1 4,027,529 - DZA65_RS18700 0.25 -0.3 4,027,529 - DZA65_RS18700 0.25 +0.0 4,027,529 - DZA65_RS18700 0.25 +0.5 4,027,529 - DZA65_RS18700 0.25 +1.4 4,027,529 - DZA65_RS18700 0.25 -1.3 4,027,529 - DZA65_RS18700 0.25 +1.0 4,027,529 - DZA65_RS18700 0.25 +0.4 4,027,529 - DZA65_RS18700 0.25 +0.2 4,027,529 - DZA65_RS18700 0.25 +0.0 4,027,574 - DZA65_RS18700 0.30 +1.4 4,027,639 + DZA65_RS18700 0.37 -1.2 4,027,640 - DZA65_RS18700 0.37 +1.0 4,027,640 - DZA65_RS18700 0.37 -2.0 4,027,640 - DZA65_RS18700 0.37 -0.2 4,027,740 + DZA65_RS18700 0.47 -0.1 4,027,741 - DZA65_RS18700 0.47 -0.3 4,027,819 - DZA65_RS18700 0.55 -1.2 4,028,100 + DZA65_RS18700 0.85 -1.0 4,028,101 - DZA65_RS18700 0.85 -0.2 4,028,176 + +0.2 4,028,176 + +0.3 4,028,176 + +0.3 4,028,177 - -0.1 4,028,177 - -1.6 4,028,177 - +0.4 4,028,217 - -0.6 4,028,217 - +1.6 4,028,217 - +0.0 4,028,217 - +1.0 4,028,290 + +0.0 4,028,290 + +0.4 4,028,290 + +0.0 4,028,291 - -1.8 4,028,306 - -0.6 4,028,306 - +0.2 4,028,367 - -0.8 4,028,482 + DZA65_RS18705 0.18 +0.8 4,028,482 + DZA65_RS18705 0.18 +0.4 4,028,483 - DZA65_RS18705 0.18 -1.9 4,028,483 - DZA65_RS18705 0.18 -1.0 4,028,483 - DZA65_RS18705 0.18 +0.4 4,028,483 - DZA65_RS18705 0.18 +0.1 4,028,483 - DZA65_RS18705 0.18 -0.6 4,028,483 - DZA65_RS18705 0.18 +0.4 4,028,483 - DZA65_RS18705 0.18 -1.1 4,028,483 - DZA65_RS18705 0.18 +0.8 4,028,542 - DZA65_RS18705 0.23 +0.0 4,028,542 - DZA65_RS18705 0.23 +2.4 4,028,542 - DZA65_RS18705 0.23 +0.8 4,028,574 + DZA65_RS18705 0.25 +0.4 4,028,574 + DZA65_RS18705 0.25 +0.4 4,028,645 - DZA65_RS18705 0.30 +2.6 4,028,661 + DZA65_RS18705 0.31 -2.8 4,028,661 + DZA65_RS18705 0.31 -0.6 4,028,661 + DZA65_RS18705 0.31 +0.4 4,028,661 + DZA65_RS18705 0.31 +0.8 4,028,662 - DZA65_RS18705 0.32 -0.6 4,028,662 - DZA65_RS18705 0.32 -1.3 4,028,763 + DZA65_RS18705 0.39 -2.1 4,028,763 + DZA65_RS18705 0.39 -0.4 4,028,763 + DZA65_RS18705 0.39 -1.1 4,028,763 + DZA65_RS18705 0.39 +0.3 4,028,763 + DZA65_RS18705 0.39 -0.5 4,028,763 + DZA65_RS18705 0.39 +2.4 4,028,764 - DZA65_RS18705 0.39 -1.2 4,028,764 - DZA65_RS18705 0.39 +0.0 4,028,764 - DZA65_RS18705 0.39 +0.3 4,028,764 - DZA65_RS18705 0.39 -1.3 4,028,764 - DZA65_RS18705 0.39 -2.8 4,028,764 - DZA65_RS18705 0.39 +0.6 4,028,800 + DZA65_RS18705 0.42 -0.5 4,028,801 - DZA65_RS18705 0.42 +0.2 4,028,824 + DZA65_RS18705 0.44 -4.1 4,028,840 - DZA65_RS18705 0.45 -0.3 4,028,840 - DZA65_RS18705 0.45 +0.4 4,028,840 - DZA65_RS18705 0.45 +0.4 4,028,840 - DZA65_RS18705 0.45 +2.0 4,028,847 + DZA65_RS18705 0.45 +0.7 4,028,934 - DZA65_RS18705 0.52 -1.0 4,028,934 - DZA65_RS18705 0.52 +0.8 4,028,970 + DZA65_RS18705 0.55 -2.0 4,028,970 + DZA65_RS18705 0.55 +0.4 4,028,970 + DZA65_RS18705 0.55 +0.5 4,028,970 + DZA65_RS18705 0.55 -1.3 4,028,971 - DZA65_RS18705 0.55 +0.4 4,028,971 - DZA65_RS18705 0.55 +0.4 4,028,981 + DZA65_RS18705 0.55 -2.3 4,028,981 + DZA65_RS18705 0.55 +1.6 4,028,982 - DZA65_RS18705 0.55 -1.0 4,028,982 - DZA65_RS18705 0.55 -0.3 4,028,991 + DZA65_RS18705 0.56 +0.4 4,028,991 + DZA65_RS18705 0.56 -1.2 4,028,991 + DZA65_RS18705 0.56 +0.7 4,028,992 - DZA65_RS18705 0.56 +0.0 4,028,992 - DZA65_RS18705 0.56 +1.0 4,028,992 - DZA65_RS18705 0.56 -0.9 4,028,992 - DZA65_RS18705 0.56 -1.1 4,028,992 - DZA65_RS18705 0.56 +1.0 4,029,015 + DZA65_RS18705 0.58 +1.0 4,029,015 + DZA65_RS18705 0.58 -2.1 4,029,015 + DZA65_RS18705 0.58 -1.1 4,029,015 + DZA65_RS18705 0.58 -1.8 4,029,015 + DZA65_RS18705 0.58 -0.0 4,029,015 + DZA65_RS18705 0.58 -1.0 4,029,015 + DZA65_RS18705 0.58 -0.3 4,029,016 - DZA65_RS18705 0.58 +0.3 4,029,016 - DZA65_RS18705 0.58 -0.2 4,029,016 - DZA65_RS18705 0.58 +0.5 4,029,025 + DZA65_RS18705 0.59 -2.6 4,029,026 - DZA65_RS18705 0.59 -1.3 4,029,146 + DZA65_RS18705 0.68 -1.3 4,029,146 + DZA65_RS18705 0.68 +1.7 4,029,147 - DZA65_RS18705 0.68 +0.5 4,029,230 + DZA65_RS18705 0.74 +1.0 4,029,231 - DZA65_RS18705 0.74 +0.2 4,029,231 - DZA65_RS18705 0.74 +0.4
Or see this region's nucleotide sequence