Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13375

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,864,683	+		DZA65_RS13370	0.49	-1.9
2,864,684	-		DZA65_RS13370	0.49	+0.2
2,864,709	+		DZA65_RS13370	0.51	+1.0
2,864,709	+		DZA65_RS13370	0.51	+0.1
2,864,709	+		DZA65_RS13370	0.51	-0.7
2,864,710	-		DZA65_RS13370	0.51	-1.9
2,864,710	-		DZA65_RS13370	0.51	+0.9
2,864,941	+		DZA65_RS13370	0.63	+0.2
2,864,941	+		DZA65_RS13370	0.63	-1.3
2,864,941	+		DZA65_RS13370	0.63	+1.3
2,864,941	+		DZA65_RS13370	0.63	+0.1
2,864,942	-		DZA65_RS13370	0.63	-1.0
2,864,942	-		DZA65_RS13370	0.63	+0.9
2,864,975	+		DZA65_RS13370	0.64	+2.2
2,865,008	+		DZA65_RS13370	0.66	+0.7
2,865,008	+		DZA65_RS13370	0.66	+0.6
2,865,008	+		DZA65_RS13370	0.66	-2.3
2,865,009	-		DZA65_RS13370	0.66	-0.6
2,865,098	+		DZA65_RS13370	0.71	-1.5
2,865,099	-		DZA65_RS13370	0.71	-0.3
2,865,361	+		DZA65_RS13370	0.84	-0.0
2,865,361	+		DZA65_RS13370	0.84	+0.5
2,865,362	-		DZA65_RS13370	0.84	-0.3
2,865,362	-		DZA65_RS13370	0.84	-0.3
2,865,478	+				-0.9
2,865,479	-				+0.2
2,865,504	+				+1.1
2,865,567	+				-1.3
2,865,567	+				-1.9
2,865,567	+				-2.5
2,865,568	-				+2.3
2,865,587	+				+2.0
2,865,650	+				-0.2
2,865,650	+				-1.1
2,865,650	+				+1.3
2,865,650	+				-0.3
2,865,651	-				-1.8
2,865,651	-				+0.9
2,865,651	-				+0.4
2,865,665	+				-0.9
2,865,665	+				-0.3
2,865,665	+				-1.0
2,865,665	+				+0.4
2,865,666	-				-1.5
2,865,666	-				+1.2
2,865,666	-				-1.6
2,865,666	-				-1.6
2,865,666	-				-3.0
2,865,666	-				+1.0
2,865,666	-				-0.5
2,865,666	-				-2.1
2,865,666	-				-0.3
2,865,669	+				+0.4
2,865,669	+				+0.7
2,865,830	+				-0.3
2,865,830	+				-0.6
2,865,831	-				+0.7
2,865,896	+		DZA65_RS13375	0.11	+0.7
2,865,896	+		DZA65_RS13375	0.11	-0.8
2,865,896	+		DZA65_RS13375	0.11	-0.6
2,865,897	-		DZA65_RS13375	0.11	+0.2
2,865,897	-		DZA65_RS13375	0.11	-0.3
2,865,897	-		DZA65_RS13375	0.11	-1.3
2,865,897	-		DZA65_RS13375	0.11	-2.6
2,865,897	-		DZA65_RS13375	0.11	-0.1
2,866,071	+		DZA65_RS13375	0.19	+0.4
2,866,072	-		DZA65_RS13375	0.19	+1.0
2,866,072	-		DZA65_RS13375	0.19	-0.0
2,866,127	+		DZA65_RS13375	0.22	+2.3
2,866,127	+				-1.9
2,866,127	+		DZA65_RS13375	0.22	-0.2
2,866,128	-		DZA65_RS13375	0.22	+0.3
2,866,128	-		DZA65_RS13375	0.22	+0.3
2,866,146	+		DZA65_RS13375	0.22	+1.5
2,866,147	-		DZA65_RS13375	0.23	+0.9
2,866,195	+		DZA65_RS13375	0.25	-2.3
2,866,196	-		DZA65_RS13375	0.25	+1.1
2,866,196	-		DZA65_RS13375	0.25	+0.7
2,866,239	+		DZA65_RS13375	0.27	+0.7
2,866,240	-		DZA65_RS13375	0.27	+0.2
2,866,240	-		DZA65_RS13375	0.27	+0.3
2,866,281	-		DZA65_RS13375	0.29	-0.0
2,866,318	-		DZA65_RS13375	0.31	-0.3
2,866,458	+		DZA65_RS13375	0.37	+0.7
2,866,458	+		DZA65_RS13375	0.37	+0.9
2,866,506	+		DZA65_RS13375	0.39	+2.3
2,866,506	+		DZA65_RS13375	0.39	+0.0
2,866,506	+		DZA65_RS13375	0.39	+0.2
2,866,507	-		DZA65_RS13375	0.39	+0.7
2,866,507	-		DZA65_RS13375	0.39	-0.2
2,866,528	-		DZA65_RS13375	0.40	-0.9
2,866,536	+		DZA65_RS13375	0.41	+1.0
2,866,665	+		DZA65_RS13375	0.47	-0.7
2,866,816	+		DZA65_RS13375	0.54	+0.0
2,866,816	+		DZA65_RS13375	0.54	+1.0
2,866,816	+		DZA65_RS13375	0.54	+0.5
2,866,816	+		DZA65_RS13375	0.54	-0.1
2,866,816	+		DZA65_RS13375	0.54	+0.2
2,866,817	-		DZA65_RS13375	0.54	-1.3
2,866,817	-		DZA65_RS13375	0.54	+0.2
2,866,860	+				-0.9
2,867,246	+		DZA65_RS13375	0.74	+0.7
2,867,247	-		DZA65_RS13375	0.74	+0.3
2,867,247	-		DZA65_RS13375	0.74	+3.0
2,867,333	+		DZA65_RS13375	0.78	-1.6
2,867,333	+		DZA65_RS13375	0.78	-0.3
2,867,333	+				-2.1
2,867,334	-		DZA65_RS13375	0.78	-0.1
2,867,377	+		DZA65_RS13375	0.80	+0.3
2,867,377	+		DZA65_RS13375	0.80	-1.6
2,867,377	+		DZA65_RS13375	0.80	+0.5
2,867,377	+		DZA65_RS13375	0.80	+1.0
2,867,378	-		DZA65_RS13375	0.80	+2.0
2,867,378	-		DZA65_RS13375	0.80	-0.5
2,867,475	+		DZA65_RS13375	0.85	-0.3
2,867,475	+		DZA65_RS13375	0.85	-0.0
2,867,476	-		DZA65_RS13375	0.85	+0.9
2,867,476	-		DZA65_RS13375	0.85	+0.6
2,867,577	+		DZA65_RS13375	0.90	+0.7
2,867,577	+		DZA65_RS13375	0.90	+0.5
2,867,577	+		DZA65_RS13375	0.90	-1.3
2,867,578	-		DZA65_RS13375	0.90	+0.6
2,867,596	-				-0.9
2,867,596	-				-0.5
2,867,596	-				+2.0
2,867,602	+				+0.7
2,867,661	+				-0.9
2,867,662	-				+0.4
2,867,662	-				+0.1
2,867,702	+				+0.4
2,867,702	+				-0.1
2,867,703	-				-0.4
2,867,703	-				-0.1
2,867,703	-				+0.5
2,867,703	-				+1.2
2,867,710	+				-1.6
2,867,710	+				-0.3
2,867,711	-				+1.1
2,867,711	-				+1.7
2,867,711	-				+0.3
2,867,711	-				+0.5
2,867,711	-				-0.0
2,867,803	+				-0.9
2,867,803	+				+0.2
2,867,804	-				-0.9
2,867,827	+				+0.7
2,867,827	+				-1.4
2,867,827	+				+0.1
2,867,828	-				-1.3
2,867,830	+				+1.5
2,867,830	+				+1.5
2,867,830	+				+2.1
2,867,830	+				+0.5
2,867,831	-				+0.3
2,867,831	-				+0.3
2,867,831	-				+0.7
2,867,831	-				+0.4
2,867,831	-				+0.2
2,867,831	-				-0.1
2,867,831	-				-1.1
2,867,875	+				-0.0
2,867,876	-				+1.0
2,867,894	+				-0.9
2,867,914	+				+0.0
2,867,914	+				+0.2
2,867,914	+				-0.3
2,867,915	-				+1.4
2,867,915	-				-0.1
2,867,916	+				+0.9
2,867,916	+				+1.7
2,867,916	+				-1.9
2,867,916	+				-2.1
2,867,916	+				+0.6
2,867,916	+				-0.5
2,867,916	+				-0.1
2,867,917	-				+0.4
2,867,917	-				-0.4
2,867,917	-				-0.3
2,867,917	-				-0.7
2,867,917	-				+0.1
2,867,920	+				+1.7
2,867,920	+				+0.7
2,867,920	+				-0.5
2,867,920	+				-0.3
2,867,920	+				+0.5
2,867,920	+				-1.7
2,867,920	+				-0.0
2,867,921	-				+1.1
2,867,921	-				+1.2
2,867,953	+				+0.7
2,867,987	+				+0.1
2,867,987	+				-1.9
2,867,988	-				-1.9
2,868,313	+		DZA65_RS13380	0.30	+0.4
2,868,313	+		DZA65_RS13380	0.30	+1.3
2,868,478	-		DZA65_RS13380	0.45	+1.1
2,868,735	+		DZA65_RS13380	0.69	+0.5
2,868,787	+		DZA65_RS13380	0.73	+0.1
2,868,788	-		DZA65_RS13380	0.73	+1.3