Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13110

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,811,325	+				-1.7
2,811,325	+				-0.1
2,811,325	+				-0.9
2,811,326	-				-1.9
2,811,326	-				-1.5
2,811,326	-				-1.4
2,811,329	-				+0.3
2,811,329	-				-1.4
2,811,360	+				-0.1
2,811,361	-				-0.4
2,811,372	-				-1.2
2,811,372	-				-1.4
2,811,447	+				-0.9
2,811,447	+				+1.3
2,811,447	+				+1.1
2,811,448	-				-0.1
2,811,448	-				-0.9
2,811,448	-				+0.2
2,811,452	+				+0.9
2,811,453	-				-0.1
2,811,453	-				+0.6
2,811,453	-				+0.6
2,811,453	-				-0.4
2,811,454	+				+0.5
2,811,454	+				+0.9
2,811,454	+				-0.1
2,811,454	+				-0.4
2,811,454	+				-0.4
2,811,454	+				+0.2
2,811,454	+				-1.4
2,811,454	+				+0.6
2,811,454	+				-1.4
2,811,454	+				+0.6
2,811,454	+				-0.9
2,811,454	+				+1.0
2,811,454	+				+1.5
2,811,454	+				-0.4
2,811,454	+				+0.8
2,811,454	+				+2.0
2,811,454	+				+1.3
2,811,454	+				-0.4
2,811,454	+				+0.7
2,811,455	-				-0.0
2,811,455	-				-0.7
2,811,455	-				-0.1
2,811,455	-				+0.4
2,811,455	-				+0.6
2,811,455	-				+0.8
2,811,455	-				-0.3
2,811,455	-				-0.1
2,811,455	-				+0.3
2,811,455	-				+1.6
2,811,455	-				-0.0
2,811,455	-				+1.0
2,811,455	-				+0.2
2,811,455	-				+0.6
2,811,455	-				+1.0
2,811,455	-				+1.3
2,811,455	-				+1.3
2,811,455	-				+0.6
2,811,455	-				+0.3
2,811,455	-				+0.3
2,811,455	-				+0.1
2,811,455	-				-1.2
2,811,456	+				-1.4
2,811,456	+				-0.2
2,811,456	+				-1.2
2,811,456	+				+0.2
2,811,456	+				-0.1
2,811,456	+				+0.1
2,811,456	+				-2.4
2,811,456	+				+2.0
2,811,456	+				-0.0
2,811,456	+				-0.9
2,811,456	+				-1.2
2,811,456	+				-0.4
2,811,456	+				+0.6
2,811,456	+				-0.2
2,811,456	+				-1.5
2,811,456	+				+0.1
2,811,457	-				+2.9
2,811,457	-				+0.6
2,811,457	-				+2.1
2,811,457	-				-0.9
2,811,457	-				+0.9
2,811,457	-				+0.9
2,811,457	-				+0.1
2,811,457	-				-1.5
2,811,457	-				+0.9
2,811,457	-				-1.1
2,811,457	-				+0.1
2,811,457	-				-0.2
2,811,457	-				+0.6
2,811,457	-				-0.1
2,811,457	-				-0.1
2,811,457	-				-0.6
2,811,457	-				-0.5
2,811,457	-				-0.4
2,811,457	-				+1.1
2,811,457	-				+0.4
2,811,457	-				+1.2
2,811,458	+				-0.4
2,811,458	+				+2.0
2,811,458	+				-0.9
2,811,458	+				+1.6
2,811,459	-				-0.7
2,811,459	-				-1.7
2,811,459	-				-1.9
2,811,459	-				-0.4
2,811,459	-				+0.6
2,811,466	-				-1.4
2,811,466	-				+0.9
2,811,466	-				+0.4
2,811,467	+				-0.4
2,811,467	+				-0.4
2,811,468	-				-1.7
2,811,484	+				-0.5
2,811,485	-				+2.3
2,811,485	-				-1.5
2,811,494	-				+2.2
2,811,587	+				+0.4
2,811,587	+				-0.7
2,811,587	+				+0.5
2,811,587	+				+1.1
2,811,587	+				+0.2
2,811,587	+				+0.6
2,811,587	+				+0.2
2,811,588	-				+2.2
2,811,588	-				+0.5
2,811,588	-				+0.6
2,811,588	-				-0.8
2,811,588	-				+0.3
2,811,588	-				+1.5
2,811,588	-				-1.9
2,811,591	+				+2.6
2,811,591	+				+0.3
2,811,592	-				+1.2
2,811,592	-				+0.3
2,811,592	-				+0.1
2,811,592	-				+3.0
2,811,592	-				+0.6
2,811,595	+				+0.8
2,811,595	+				+0.1
2,811,596	-				+0.1
2,811,596	-				+0.5
2,811,596	-				+1.3
2,811,642	+				+0.6
2,811,643	-				+0.9
2,811,651	+				-0.6
2,811,652	-				+1.4
2,811,652	-				+0.6
2,811,652	-				+0.3
2,811,652	-				+1.8
2,811,652	-				+0.8
2,811,652	-				+2.2
2,811,653	+				+1.1
2,811,653	+				+1.2
2,811,653	+				+3.3
2,811,653	+				+2.1
2,811,653	+				-0.1
2,811,653	+				-0.6
2,811,653	+				+0.9
2,811,653	+				+0.9
2,811,653	+				+0.4
2,811,653	+				+2.0
2,811,654	-				+1.1
2,811,654	-				+1.1
2,811,654	-				-0.1
2,811,654	-				+0.8
2,811,654	-				+1.0
2,811,654	-				-0.5
2,811,654	-				+0.6
2,811,654	-				+0.4
2,811,654	-				+1.1
2,811,654	-				+2.4
2,811,654	-				-0.9
2,811,654	-				-0.7
2,811,692	-				+0.5
2,811,705	-				-0.1
2,811,708	+				+1.4
2,811,709	-				+0.4
2,811,757	+		DZA65_RS13105	0.11	+0.7
2,811,757	+		DZA65_RS13105	0.11	-0.1
2,811,758	-		DZA65_RS13105	0.12	+1.0
2,811,758	-		DZA65_RS13105	0.12	+2.1
2,811,758	-		DZA65_RS13105	0.12	-0.8
2,811,760	+		DZA65_RS13105	0.12	+0.6
2,811,761	-		DZA65_RS13105	0.12	+1.2
2,811,791	-		DZA65_RS13105	0.19	+1.0
2,811,793	+		DZA65_RS13105	0.20	+2.7
2,811,793	+		DZA65_RS13105	0.20	+0.9
2,811,794	-		DZA65_RS13105	0.20	+1.3
2,811,800	+		DZA65_RS13105	0.21	+2.8
2,811,800	+		DZA65_RS13105	0.21	+1.8
2,811,800	+		DZA65_RS13105	0.21	+0.9
2,811,851	-		DZA65_RS13105	0.33	-0.2
2,811,851	-		DZA65_RS13105	0.33	+2.4
2,811,877	+		DZA65_RS13105	0.39	+1.9
2,811,877	+		DZA65_RS13105	0.39	+1.6
2,811,878	-		DZA65_RS13105	0.39	+3.2
2,811,878	-		DZA65_RS13105	0.39	+1.6
2,811,878	-		DZA65_RS13105	0.39	+0.1
2,811,920	+		DZA65_RS13105	0.49	+1.3
2,811,920	+				+1.4
2,811,921	-		DZA65_RS13105	0.49	-0.1
2,811,921	-		DZA65_RS13105	0.49	+1.5
2,811,949	+		DZA65_RS13105	0.55	+1.4
2,811,950	-		DZA65_RS13105	0.55	+0.5
2,811,950	-		DZA65_RS13105	0.55	-0.9
2,811,950	-		DZA65_RS13105	0.55	+1.5
2,811,950	-		DZA65_RS13105	0.55	+1.1
2,811,978	-		DZA65_RS13105	0.62	+2.1
2,812,027	+		DZA65_RS13105	0.73	+0.3
2,812,027	+		DZA65_RS13105	0.73	+0.1
2,812,027	+		DZA65_RS13105	0.73	-0.6
2,812,028	-		DZA65_RS13105	0.73	+1.8
2,812,028	-		DZA65_RS13105	0.73	+2.6
2,812,028	-		DZA65_RS13105	0.73	-0.0
2,812,028	-		DZA65_RS13105	0.73	+1.6
2,812,028	-		DZA65_RS13105	0.73	+1.4
2,812,028	-		DZA65_RS13105	0.73	+0.4
2,812,028	-		DZA65_RS13105	0.73	+1.6
2,812,030	+		DZA65_RS13105	0.74	-0.1
2,812,030	+		DZA65_RS13105	0.74	+1.3
2,812,030	+		DZA65_RS13105	0.74	+0.9
2,812,030	+		DZA65_RS13105	0.74	+0.4
2,812,031	-		DZA65_RS13105	0.74	-0.7
2,812,031	-		DZA65_RS13105	0.74	+1.3
2,812,031	-		DZA65_RS13105	0.74	+1.0
2,812,031	-		DZA65_RS13105	0.74	+0.8
2,812,073	+		DZA65_RS13105	0.84	-0.7
2,812,100	+		DZA65_RS13105	0.90	+1.3
2,812,100	+		DZA65_RS13105	0.90	+0.8
2,812,100	+		DZA65_RS13105	0.90	+3.2
2,812,100	+		DZA65_RS13105	0.90	-1.2
2,812,100	+		DZA65_RS13105	0.90	+1.5
2,812,100	+		DZA65_RS13105	0.90	+1.2
2,812,101	-				+2.2
2,812,101	-				+1.5
2,812,118	+				+1.0
2,812,119	-				+0.8
2,812,157	+				-0.4
2,812,204	+				-1.9
2,812,205	-				+1.2
2,812,215	+				+1.1
2,812,215	+				+0.3
2,812,216	-				-1.4
2,812,233	-				-1.2
2,812,233	-				+1.7
2,812,246	+				+0.7
2,812,247	-				-1.7
2,812,251	+				+1.3
2,812,258	+				-0.4
2,812,269	+				+1.3
2,812,288	-				-0.1
2,812,288	-				+0.2
2,812,294	+				-0.2
2,812,300	+				+0.5
2,812,300	+				-1.9
2,812,301	-				-0.6
2,812,304	+				+1.2
2,812,408	+		DZA65_RS13110	0.38	+0.5
2,812,408	+		DZA65_RS13110	0.38	-0.8
2,812,632	+				+0.2
2,812,632	+				+0.6
2,812,633	-				-0.5
2,812,636	+				-1.7
2,812,655	+				-1.4
2,812,655	+				-0.0
2,812,732	+				+1.2
2,812,732	+				+0.2
2,812,733	-				+0.4
2,812,734	+				-0.4
2,812,734	+				+0.6
2,812,735	-				+0.6
2,812,769	-				-1.7
2,812,809	+				-0.9
2,812,809	+				-0.4
2,812,819	+				-0.9
2,812,828	-				-0.1
2,812,835	-				-3.2
2,812,835	-				-0.1
2,812,843	-				+2.0
2,812,877	+		DZA65_RS13115	0.14	-1.4
2,812,878	-		DZA65_RS13115	0.14	-1.5
2,812,887	+		DZA65_RS13115	0.16	-0.6
2,812,887	+		DZA65_RS13115	0.16	+0.4
2,812,928	+		DZA65_RS13115	0.26	-0.7
2,812,929	-		DZA65_RS13115	0.27	-0.2
2,812,934	+		DZA65_RS13115	0.28	-1.7
2,812,935	-		DZA65_RS13115	0.28	+0.7
2,812,935	-		DZA65_RS13115	0.28	-0.9
2,812,935	-		DZA65_RS13115	0.28	+2.2
2,812,935	-		DZA65_RS13115	0.28	-2.4
2,812,955	+		DZA65_RS13115	0.33	+1.0
2,812,994	+		DZA65_RS13115	0.43	-2.4
2,812,994	+		DZA65_RS13115	0.43	-0.1
2,813,015	+		DZA65_RS13115	0.48	-0.1
2,813,015	+		DZA65_RS13115	0.48	+0.3
2,813,015	+		DZA65_RS13115	0.48	-2.9
2,813,015	+				-1.7
2,813,016	-		DZA65_RS13115	0.48	+2.4
2,813,016	-		DZA65_RS13115	0.48	-1.1
2,813,016	-		DZA65_RS13115	0.48	-0.4
2,813,016	-		DZA65_RS13115	0.48	+3.0
2,813,064	+		DZA65_RS13115	0.60	-1.4
2,813,064	+		DZA65_RS13115	0.60	-2.2
2,813,065	-		DZA65_RS13115	0.60	-0.2
2,813,065	-		DZA65_RS13115	0.60	+0.1
2,813,065	-		DZA65_RS13115	0.60	-0.1
2,813,065	-		DZA65_RS13115	0.60	+0.1
2,813,065	-		DZA65_RS13115	0.60	-1.1
2,813,065	-		DZA65_RS13115	0.60	-0.3
2,813,084	-		DZA65_RS13115	0.65	+0.2
2,813,108	-		DZA65_RS13115	0.71	-0.9
2,813,372	+				+0.3
2,813,372	+				-0.1
2,813,409	+				-1.6
2,813,409	+				-3.2