Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11405

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS11400 and DZA65_RS11405 are separated by 47 nucleotidesDZA65_RS11405 and DZA65_RS11410 are separated by 209 nucleotidesDZA65_RS11410 and DZA65_RS11415 are separated by 3 nucleotides DZA65_RS11400: DZA65_RS11400 - peptide chain release factor 1, at 2,425,436 to 2,426,521 _RS11400 DZA65_RS11405: DZA65_RS11405 - glutamyl-tRNA reductase, at 2,426,569 to 2,427,825 _RS11405 DZA65_RS11410: DZA65_RS11410 - lipoprotein localization protein LolB, at 2,428,035 to 2,428,655 _RS11410 DZA65_RS11415: DZA65_RS11415 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 2,428,659 to 2,429,531 _RS11415 Position (kb) 2426 2427 2428Strain fitness (log2 ratio) -1 0 1 2at 2426.571 kb on - strandat 2426.571 kb on - strandat 2426.571 kb on - strandat 2426.571 kb on - strandat 2427.850 kb on - strandat 2427.850 kb on - strandat 2427.853 kb on - strandat 2427.853 kb on - strandat 2427.878 kb on - strandat 2427.878 kb on - strandat 2428.017 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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2,426,571 - -0.5
2,426,571 - +0.5
2,426,571 - +0.5
2,426,571 - +0.1
2,427,850 - -1.5
2,427,850 - +0.2
2,427,853 - +2.1
2,427,853 - -1.5
2,427,878 - -0.9
2,427,878 - -0.5
2,428,017 + -1.5

Or see this region's nucleotide sequence