Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04205 and DZA65_RS04215 are separated by 587 nucleotides DZA65_RS04215 and DZA65_RS04220 are separated by 155 nucleotides DZA65_RS04220 and DZA65_RS04225 overlap by 8 nucleotides DZA65_RS04225 and DZA65_RS04230 are separated by 58 nucleotides
DZA65_RS04205: DZA65_RS04205 - zinc ribbon domain-containing protein, at 880,162 to 880,665
_RS04205
DZA65_RS04215: DZA65_RS04215 - SsrA-binding protein SmpB, at 881,253 to 881,735
_RS04215
DZA65_RS04220: DZA65_RS04220 - type II toxin-antitoxin system RatA family toxin, at 881,891 to 882,325
_RS04220
DZA65_RS04225: DZA65_RS04225 - RnfH family protein, at 882,318 to 882,611
_RS04225
DZA65_RS04230: DZA65_RS04230 - outer membrane protein assembly factor BamE, at 882,670 to 883,014
_RS04230
Position (kb) 881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 880.367 kb on + strand, within DZA65_RS04205 at 880.367 kb on + strand, within DZA65_RS04205 at 880.368 kb on - strand, within DZA65_RS04205 at 880.384 kb on + strand, within DZA65_RS04205 at 880.516 kb on + strand, within DZA65_RS04205 at 880.517 kb on - strand, within DZA65_RS04205 at 880.519 kb on - strand, within DZA65_RS04205 at 880.535 kb on - strand, within DZA65_RS04205 at 880.578 kb on + strand, within DZA65_RS04205 at 880.579 kb on - strand, within DZA65_RS04205 at 880.579 kb on - strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.582 kb on - strand, within DZA65_RS04205 at 880.627 kb on + strand at 880.627 kb on + strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.638 kb on + strand at 880.677 kb on + strand at 880.678 kb on - strand at 880.678 kb on - strand at 880.695 kb on + strand at 880.695 kb on + strand at 880.696 kb on - strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.703 kb on - strand at 880.725 kb on - strand at 880.742 kb on + strand at 880.742 kb on + strand at 880.743 kb on - strand at 880.818 kb on + strand at 880.877 kb on - strand at 880.885 kb on - strand at 880.896 kb on + strand at 880.897 kb on - strand at 881.219 kb on - strand at 881.220 kb on + strand at 881.220 kb on + strand at 881.221 kb on - strand at 881.239 kb on + strand at 881.240 kb on - strand at 881.244 kb on + strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.410 kb on + strand, within DZA65_RS04215 at 881.410 kb on + strand, within DZA65_RS04215 at 881.411 kb on - strand, within DZA65_RS04215 at 881.471 kb on + strand, within DZA65_RS04215 at 881.572 kb on + strand, within DZA65_RS04215 at 881.572 kb on + strand, within DZA65_RS04215 at 881.573 kb on - strand, within DZA65_RS04215 at 881.573 kb on - strand, within DZA65_RS04215 at 881.666 kb on - strand, within DZA65_RS04215 at 881.666 kb on - strand, within DZA65_RS04215 at 881.666 kb on - strand, within DZA65_RS04215 at 881.714 kb on + strand at 881.747 kb on + strand at 881.748 kb on - strand at 881.748 kb on - strand at 881.748 kb on - strand at 881.748 kb on - strand at 881.749 kb on + strand at 881.749 kb on + strand at 881.750 kb on - strand at 881.750 kb on - strand at 881.791 kb on - strand at 881.791 kb on - strand at 881.854 kb on + strand at 881.857 kb on + strand at 881.857 kb on + strand at 881.857 kb on + strand at 881.858 kb on - strand at 881.858 kb on - strand at 881.858 kb on - strand at 881.858 kb on - strand at 881.872 kb on - strand at 881.890 kb on + strand at 881.891 kb on - strand at 881.943 kb on - strand, within DZA65_RS04220 at 881.945 kb on - strand, within DZA65_RS04220 at 881.945 kb on - strand, within DZA65_RS04220 at 881.945 kb on - strand at 882.089 kb on - strand, within DZA65_RS04220 at 882.109 kb on + strand, within DZA65_RS04220 at 882.167 kb on - strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.191 kb on - strand, within DZA65_RS04220 at 882.191 kb on - strand, within DZA65_RS04220 at 882.191 kb on - strand, within DZA65_RS04220 at 882.277 kb on + strand, within DZA65_RS04220 at 882.277 kb on + strand, within DZA65_RS04220 at 882.314 kb on + strand at 882.314 kb on + strand at 882.314 kb on + strand at 882.315 kb on - strand at 882.315 kb on - strand at 882.346 kb on - strand at 882.366 kb on + strand at 882.367 kb on - strand, within DZA65_RS04225 at 882.414 kb on - strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.509 kb on - strand, within DZA65_RS04225 at 882.509 kb on - strand, within DZA65_RS04225 at 882.509 kb on - strand, within DZA65_RS04225 at 882.560 kb on + strand, within DZA65_RS04225 at 882.568 kb on + strand, within DZA65_RS04225 at 882.569 kb on - strand, within DZA65_RS04225 at 882.671 kb on + strand at 882.671 kb on + strand at 882.671 kb on + strand at 882.671 kb on + strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 880,367 + DZA65_RS04205 0.41 +0.4 880,367 + DZA65_RS04205 0.41 -0.4 880,368 - DZA65_RS04205 0.41 -0.4 880,384 + DZA65_RS04205 0.44 -0.2 880,516 + DZA65_RS04205 0.70 -0.2 880,517 - DZA65_RS04205 0.70 -1.9 880,519 - DZA65_RS04205 0.71 -0.9 880,535 - DZA65_RS04205 0.74 -2.4 880,578 + DZA65_RS04205 0.83 -1.4 880,579 - DZA65_RS04205 0.83 +1.5 880,579 - DZA65_RS04205 0.83 -0.5 880,581 + DZA65_RS04205 0.83 -0.1 880,581 + DZA65_RS04205 0.83 -0.9 880,581 + DZA65_RS04205 0.83 +1.9 880,582 - DZA65_RS04205 0.83 -2.3 880,627 + -1.4 880,627 + +0.2 880,628 - +0.5 880,628 - -1.1 880,628 - -1.3 880,628 - +0.3 880,628 - +1.9 880,628 - -1.1 880,638 + -0.7 880,677 + -2.9 880,678 - +0.2 880,678 - -0.2 880,695 + -0.4 880,695 + -0.4 880,696 - -1.7 880,699 + +0.3 880,699 + -1.0 880,699 + +1.0 880,699 + +1.3 880,699 + +1.2 880,699 + -0.3 880,700 - +1.5 880,700 - +1.4 880,700 - -1.3 880,700 - -2.3 880,703 - -0.5 880,725 - +0.1 880,742 + -0.1 880,742 + +1.9 880,743 - -0.3 880,818 + -0.1 880,877 - -2.3 880,885 - -0.5 880,896 + -1.7 880,897 - -0.4 881,219 - -1.4 881,220 + +0.9 881,220 + -1.8 881,221 - -0.9 881,239 + -1.7 881,240 - +1.1 881,244 + +1.5 881,245 - +0.4 881,245 - +0.3 881,245 - -1.4 881,245 - +1.7 881,245 - +2.1 881,410 + DZA65_RS04215 0.33 -1.7 881,410 + DZA65_RS04215 0.33 +0.7 881,411 - DZA65_RS04215 0.33 -1.1 881,471 + DZA65_RS04215 0.45 -0.1 881,572 + DZA65_RS04215 0.66 -1.1 881,572 + DZA65_RS04215 0.66 -2.3 881,573 - DZA65_RS04215 0.66 -2.3 881,573 - DZA65_RS04215 0.66 +0.9 881,666 - DZA65_RS04215 0.86 -1.1 881,666 - DZA65_RS04215 0.86 +1.7 881,666 - DZA65_RS04215 0.86 -0.1 881,714 + -1.7 881,747 + +0.7 881,748 - +0.2 881,748 - +0.9 881,748 - -1.2 881,748 - -2.4 881,749 + -1.4 881,749 + -1.1 881,750 - -0.3 881,750 - -0.1 881,791 - -1.7 881,791 - -0.1 881,854 + -1.7 881,857 + -0.8 881,857 + +0.9 881,857 + -0.7 881,858 - +0.7 881,858 - -1.1 881,858 - +0.7 881,858 - -0.9 881,872 - -1.3 881,890 + -0.8 881,891 - -1.3 881,943 - DZA65_RS04220 0.12 +1.9 881,945 - DZA65_RS04220 0.12 -0.7 881,945 - DZA65_RS04220 0.12 -1.1 881,945 - -0.1 882,089 - DZA65_RS04220 0.46 -0.9 882,109 + DZA65_RS04220 0.50 -0.8 882,167 - DZA65_RS04220 0.63 +1.9 882,190 + DZA65_RS04220 0.69 -0.7 882,190 + DZA65_RS04220 0.69 -1.1 882,190 + DZA65_RS04220 0.69 -0.1 882,190 + DZA65_RS04220 0.69 -0.2 882,191 - DZA65_RS04220 0.69 -0.4 882,191 - DZA65_RS04220 0.69 -0.9 882,191 - DZA65_RS04220 0.69 -1.9 882,277 + DZA65_RS04220 0.89 +0.5 882,277 + DZA65_RS04220 0.89 -0.3 882,314 + -1.5 882,314 + -1.1 882,314 + -1.1 882,315 - +2.9 882,315 - +0.2 882,346 - -1.9 882,366 + -1.1 882,367 - DZA65_RS04225 0.17 -0.7 882,414 - DZA65_RS04225 0.33 -0.4 882,508 + DZA65_RS04225 0.65 -1.9 882,508 + DZA65_RS04225 0.65 +0.6 882,508 + DZA65_RS04225 0.65 -2.4 882,508 + DZA65_RS04225 0.65 +1.3 882,508 + DZA65_RS04225 0.65 -0.5 882,509 - DZA65_RS04225 0.65 +0.5 882,509 - DZA65_RS04225 0.65 -1.7 882,509 - DZA65_RS04225 0.65 +1.5 882,560 + DZA65_RS04225 0.82 +0.6 882,568 + DZA65_RS04225 0.85 -0.7 882,569 - DZA65_RS04225 0.85 -1.4 882,671 + +0.1 882,671 + -0.9 882,671 + -0.8 882,671 + +0.3 882,672 - +0.2 882,672 - -0.7 882,672 - -2.2 882,672 - +0.8 882,672 - -0.1 882,672 - +0.9
Or see this region's nucleotide sequence