Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02680

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02675 and DZA65_RS02680 are separated by 140 nucleotidesDZA65_RS02680 and DZA65_RS02685 are separated by 69 nucleotidesDZA65_RS02685 and DZA65_RS02690 are separated by 29 nucleotides DZA65_RS02675: DZA65_RS02675 - Gfo/Idh/MocA family oxidoreductase, at 573,823 to 574,974 _RS02675 DZA65_RS02680: DZA65_RS02680 - heavy metal translocating P-type ATPase, at 575,115 to 577,451 _RS02680 DZA65_RS02685: DZA65_RS02685 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 577,521 to 577,952 _RS02685 DZA65_RS02690: DZA65_RS02690 - LacI family DNA-binding transcriptional regulator, at 577,982 to 579,004 _RS02690 Position (kb) 575 576 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 574.194 kb on - strand, within DZA65_RS02675at 574.202 kb on - strand, within DZA65_RS02675at 574.214 kb on - strand, within DZA65_RS02675at 574.214 kb on - strand, within DZA65_RS02675at 574.260 kb on + strand, within DZA65_RS02675at 574.260 kb on + strand, within DZA65_RS02675at 574.260 kb on + strand, within DZA65_RS02675at 574.261 kb on - strand, within DZA65_RS02675at 574.261 kb on - strand, within DZA65_RS02675at 574.284 kb on + strand, within DZA65_RS02675at 574.285 kb on - strand, within DZA65_RS02675at 574.295 kb on - strand, within DZA65_RS02675at 574.295 kb on - strand, within DZA65_RS02675at 574.311 kb on + strand, within DZA65_RS02675at 574.312 kb on - strand, within DZA65_RS02675at 574.331 kb on - strand, within DZA65_RS02675at 574.339 kb on + strand, within DZA65_RS02675at 574.339 kb on + strand, within DZA65_RS02675at 574.340 kb on - strand, within DZA65_RS02675at 574.340 kb on - strand, within DZA65_RS02675at 574.351 kb on + strand, within DZA65_RS02675at 574.351 kb on + strand, within DZA65_RS02675at 574.351 kb on + strand, within DZA65_RS02675at 574.351 kb on + strand, within DZA65_RS02675at 574.351 kb on + strand, within DZA65_RS02675at 574.351 kb on + strand, within DZA65_RS02675at 574.351 kb on + strand, within DZA65_RS02675at 574.351 kb on + strand, within DZA65_RS02675at 574.351 kb on + strand, within DZA65_RS02675at 574.351 kb on + strand, within DZA65_RS02675at 574.352 kb on - strand, within DZA65_RS02675at 574.352 kb on - strand, within DZA65_RS02675at 574.352 kb on - strand, within DZA65_RS02675at 574.352 kb on - strand, within DZA65_RS02675at 574.352 kb on - strand, within DZA65_RS02675at 574.353 kb on + strand, within DZA65_RS02675at 574.353 kb on + strand, within DZA65_RS02675at 574.353 kb on + strand, within DZA65_RS02675at 574.353 kb on + strand, within DZA65_RS02675at 574.353 kb on + strand, within DZA65_RS02675at 574.353 kb on + strand, within DZA65_RS02675at 574.353 kb on + strand, within DZA65_RS02675at 574.353 kb on + strand, within DZA65_RS02675at 574.354 kb on - strand, within DZA65_RS02675at 574.354 kb on - strand, within DZA65_RS02675at 574.354 kb on - strand, within DZA65_RS02675at 574.354 kb on - strand, within DZA65_RS02675at 574.354 kb on - strand, within DZA65_RS02675at 574.354 kb on - strand, within DZA65_RS02675at 574.354 kb on - strandat 574.354 kb on - strand, within DZA65_RS02675at 574.354 kb on - strand, within DZA65_RS02675at 574.354 kb on - strand, within DZA65_RS02675at 574.354 kb on - strand, within DZA65_RS02675at 574.388 kb on - strand, within DZA65_RS02675at 574.388 kb on - strand, within DZA65_RS02675at 574.498 kb on + strand, within DZA65_RS02675at 574.498 kb on + strand, within DZA65_RS02675at 574.506 kb on + strand, within DZA65_RS02675at 574.506 kb on + strand, within DZA65_RS02675at 574.507 kb on - strand, within DZA65_RS02675at 574.507 kb on - strand, within DZA65_RS02675at 574.588 kb on + strandat 574.588 kb on + strand, within DZA65_RS02675at 574.588 kb on + strand, within DZA65_RS02675at 574.588 kb on + strand, within DZA65_RS02675at 574.589 kb on - strand, within DZA65_RS02675at 574.589 kb on - strand, within DZA65_RS02675at 574.753 kb on + strand, within DZA65_RS02675at 574.753 kb on + strand, within DZA65_RS02675at 574.754 kb on - strand, within DZA65_RS02675at 574.761 kb on + strand, within DZA65_RS02675at 574.768 kb on + strand, within DZA65_RS02675at 574.768 kb on + strand, within DZA65_RS02675at 574.768 kb on + strand, within DZA65_RS02675at 574.768 kb on + strand, within DZA65_RS02675at 574.768 kb on + strand, within DZA65_RS02675at 574.768 kb on + strand, within DZA65_RS02675at 574.791 kb on + strand, within DZA65_RS02675at 574.791 kb on + strand, within DZA65_RS02675at 574.994 kb on + strandat 574.995 kb on - strandat 574.995 kb on - strandat 574.995 kb on - strandat 574.995 kb on - strandat 574.995 kb on - strandat 575.001 kb on + strandat 575.001 kb on + strandat 575.001 kb on + strandat 575.001 kb on + strandat 575.001 kb on + strandat 575.116 kb on + strandat 575.116 kb on + strandat 575.116 kb on + strandat 575.116 kb on + strandat 575.116 kb on + strandat 575.116 kb on + strandat 575.117 kb on - strandat 575.117 kb on - strandat 575.148 kb on + strandat 575.149 kb on - strandat 575.200 kb on - strandat 575.200 kb on - strandat 575.312 kb on + strandat 575.313 kb on - strandat 575.313 kb on - strandat 575.502 kb on + strand, within DZA65_RS02680at 575.502 kb on + strand, within DZA65_RS02680at 575.502 kb on + strand, within DZA65_RS02680at 575.502 kb on + strand, within DZA65_RS02680at 575.547 kb on + strand, within DZA65_RS02680at 575.547 kb on + strand, within DZA65_RS02680at 575.547 kb on + strand, within DZA65_RS02680at 575.547 kb on + strand, within DZA65_RS02680at 575.547 kb on + strand, within DZA65_RS02680at 575.547 kb on + strand, within DZA65_RS02680at 575.547 kb on + strand, within DZA65_RS02680at 575.548 kb on - strand, within DZA65_RS02680at 575.548 kb on - strand, within DZA65_RS02680at 575.548 kb on - strand, within DZA65_RS02680at 575.548 kb on - strand, within DZA65_RS02680at 575.548 kb on - strand, within DZA65_RS02680at 575.548 kb on - strand, within DZA65_RS02680at 575.548 kb on - strand, within DZA65_RS02680at 575.562 kb on - strand, within DZA65_RS02680at 575.575 kb on + strand, within DZA65_RS02680at 575.576 kb on - strand, within DZA65_RS02680at 575.576 kb on - strand, within DZA65_RS02680at 575.607 kb on + strand, within DZA65_RS02680at 575.633 kb on + strand, within DZA65_RS02680at 575.812 kb on + strandat 575.813 kb on - strand, within DZA65_RS02680at 575.813 kb on - strand, within DZA65_RS02680at 576.091 kb on - strand, within DZA65_RS02680at 576.211 kb on + strand, within DZA65_RS02680at 576.211 kb on + strand, within DZA65_RS02680at 576.211 kb on + strand, within DZA65_RS02680at 576.211 kb on + strand, within DZA65_RS02680at 576.212 kb on - strand, within DZA65_RS02680at 576.212 kb on - strand, within DZA65_RS02680at 576.239 kb on + strand, within DZA65_RS02680at 576.295 kb on + strand, within DZA65_RS02680at 576.295 kb on + strand, within DZA65_RS02680at 576.295 kb on + strand, within DZA65_RS02680at 576.295 kb on + strand, within DZA65_RS02680at 576.295 kb on + strand, within DZA65_RS02680at 576.295 kb on + strand, within DZA65_RS02680at 576.295 kb on + strand, within DZA65_RS02680at 576.296 kb on - strand, within DZA65_RS02680at 576.296 kb on - strand, within DZA65_RS02680at 576.296 kb on - strand, within DZA65_RS02680at 576.296 kb on - strand, within DZA65_RS02680at 576.296 kb on - strand, within DZA65_RS02680at 576.296 kb on - strand, within DZA65_RS02680at 576.296 kb on - strand, within DZA65_RS02680at 576.369 kb on - strand, within DZA65_RS02680at 576.369 kb on - strand, within DZA65_RS02680at 576.636 kb on + strand, within DZA65_RS02680at 576.637 kb on - strand, within DZA65_RS02680at 577.048 kb on - strand, within DZA65_RS02680at 577.479 kb on + strandat 577.479 kb on + strandat 577.483 kb on - strandat 577.493 kb on + strandat 577.501 kb on - strandat 577.503 kb on - strandat 577.503 kb on - strandat 577.594 kb on + strand, within DZA65_RS02685at 577.614 kb on - strand, within DZA65_RS02685at 577.626 kb on + strand, within DZA65_RS02685at 577.626 kb on + strand, within DZA65_RS02685at 577.635 kb on + strand, within DZA65_RS02685at 577.635 kb on + strand, within DZA65_RS02685at 577.635 kb on + strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.639 kb on - strand, within DZA65_RS02685at 577.639 kb on - strand, within DZA65_RS02685at 577.768 kb on + strand, within DZA65_RS02685at 577.768 kb on + strand, within DZA65_RS02685at 577.769 kb on - strand, within DZA65_RS02685at 577.813 kb on + strand, within DZA65_RS02685at 577.813 kb on + strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.956 kb on + strandat 577.957 kb on - strandat 578.002 kb on + strandat 578.066 kb on + strandat 578.067 kb on - strandat 578.067 kb on - strandat 578.113 kb on + strand, within DZA65_RS02690at 578.114 kb on - strand, within DZA65_RS02690at 578.114 kb on - strand, within DZA65_RS02690at 578.114 kb on - strandat 578.114 kb on - strand, within DZA65_RS02690at 578.215 kb on + strand, within DZA65_RS02690

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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574,194 - DZA65_RS02675 0.32 -1.0
574,202 - DZA65_RS02675 0.33 -0.4
574,214 - DZA65_RS02675 0.34 +0.5
574,214 - DZA65_RS02675 0.34 -1.0
574,260 + DZA65_RS02675 0.38 +0.5
574,260 + DZA65_RS02675 0.38 +2.9
574,260 + DZA65_RS02675 0.38 -0.2
574,261 - DZA65_RS02675 0.38 +1.7
574,261 - DZA65_RS02675 0.38 -1.3
574,284 + DZA65_RS02675 0.40 -0.1
574,285 - DZA65_RS02675 0.40 +0.7
574,295 - DZA65_RS02675 0.41 +1.0
574,295 - DZA65_RS02675 0.41 +1.0
574,311 + DZA65_RS02675 0.42 -0.2
574,312 - DZA65_RS02675 0.42 -1.0
574,331 - DZA65_RS02675 0.44 +1.2
574,339 + DZA65_RS02675 0.45 +1.0
574,339 + DZA65_RS02675 0.45 -0.5
574,340 - DZA65_RS02675 0.45 +1.8
574,340 - DZA65_RS02675 0.45 +0.5
574,351 + DZA65_RS02675 0.46 -1.8
574,351 + DZA65_RS02675 0.46 +0.0
574,351 + DZA65_RS02675 0.46 -1.0
574,351 + DZA65_RS02675 0.46 -1.0
574,351 + DZA65_RS02675 0.46 +1.2
574,351 + DZA65_RS02675 0.46 +1.5
574,351 + DZA65_RS02675 0.46 +0.0
574,351 + DZA65_RS02675 0.46 -0.4
574,351 + DZA65_RS02675 0.46 +1.0
574,351 + DZA65_RS02675 0.46 +0.0
574,352 - DZA65_RS02675 0.46 +0.0
574,352 - DZA65_RS02675 0.46 -0.1
574,352 - DZA65_RS02675 0.46 +2.4
574,352 - DZA65_RS02675 0.46 -0.3
574,352 - DZA65_RS02675 0.46 -1.0
574,353 + DZA65_RS02675 0.46 +1.8
574,353 + DZA65_RS02675 0.46 +0.3
574,353 + DZA65_RS02675 0.46 -0.4
574,353 + DZA65_RS02675 0.46 +0.5
574,353 + DZA65_RS02675 0.46 +1.0
574,353 + DZA65_RS02675 0.46 -2.1
574,353 + DZA65_RS02675 0.46 -0.3
574,353 + DZA65_RS02675 0.46 -0.1
574,354 - DZA65_RS02675 0.46 +0.5
574,354 - DZA65_RS02675 0.46 +1.5
574,354 - DZA65_RS02675 0.46 +0.7
574,354 - DZA65_RS02675 0.46 -1.0
574,354 - DZA65_RS02675 0.46 -1.0
574,354 - DZA65_RS02675 0.46 -0.7
574,354 - -0.2
574,354 - DZA65_RS02675 0.46 +0.6
574,354 - DZA65_RS02675 0.46 +0.8
574,354 - DZA65_RS02675 0.46 -1.5
574,354 - DZA65_RS02675 0.46 -1.3
574,388 - DZA65_RS02675 0.49 -0.2
574,388 - DZA65_RS02675 0.49 -0.8
574,498 + DZA65_RS02675 0.59 +1.8
574,498 + DZA65_RS02675 0.59 -1.1
574,506 + DZA65_RS02675 0.59 +0.2
574,506 + DZA65_RS02675 0.59 -0.7
574,507 - DZA65_RS02675 0.59 +0.7
574,507 - DZA65_RS02675 0.59 -1.4
574,588 + -1.8
574,588 + DZA65_RS02675 0.66 +0.5
574,588 + DZA65_RS02675 0.66 -0.5
574,588 + DZA65_RS02675 0.66 +0.8
574,589 - DZA65_RS02675 0.66 +0.3
574,589 - DZA65_RS02675 0.66 -0.5
574,753 + DZA65_RS02675 0.81 -0.8
574,753 + DZA65_RS02675 0.81 +0.3
574,754 - DZA65_RS02675 0.81 +0.6
574,761 + DZA65_RS02675 0.81 +0.6
574,768 + DZA65_RS02675 0.82 +1.0
574,768 + DZA65_RS02675 0.82 +0.4
574,768 + DZA65_RS02675 0.82 +0.6
574,768 + DZA65_RS02675 0.82 +0.7
574,768 + DZA65_RS02675 0.82 -0.2
574,768 + DZA65_RS02675 0.82 -1.5
574,791 + DZA65_RS02675 0.84 -0.4
574,791 + DZA65_RS02675 0.84 +1.0
574,994 + +1.3
574,995 - +0.5
574,995 - -0.8
574,995 - +0.0
574,995 - +0.5
574,995 - -0.5
575,001 + +0.9
575,001 + +0.5
575,001 + -1.2
575,001 + -0.1
575,001 + +0.2
575,116 + -1.3
575,116 + -0.8
575,116 + -1.1
575,116 + -1.5
575,116 + +0.3
575,116 + +0.5
575,117 - -1.5
575,117 - -0.4
575,148 + +0.9
575,149 - +1.0
575,200 - +0.9
575,200 - +0.8
575,312 + -1.3
575,313 - +1.4
575,313 - -1.1
575,502 + DZA65_RS02680 0.17 +1.0
575,502 + DZA65_RS02680 0.17 +0.0
575,502 + DZA65_RS02680 0.17 -0.5
575,502 + DZA65_RS02680 0.17 +0.5
575,547 + DZA65_RS02680 0.18 -0.5
575,547 + DZA65_RS02680 0.18 -2.0
575,547 + DZA65_RS02680 0.18 +1.5
575,547 + DZA65_RS02680 0.18 +0.0
575,547 + DZA65_RS02680 0.18 +1.9
575,547 + DZA65_RS02680 0.18 +0.6
575,547 + DZA65_RS02680 0.18 +2.4
575,548 - DZA65_RS02680 0.19 -0.8
575,548 - DZA65_RS02680 0.19 +0.0
575,548 - DZA65_RS02680 0.19 +2.6
575,548 - DZA65_RS02680 0.19 -0.2
575,548 - DZA65_RS02680 0.19 +0.2
575,548 - DZA65_RS02680 0.19 +1.6
575,548 - DZA65_RS02680 0.19 -1.0
575,562 - DZA65_RS02680 0.19 -0.2
575,575 + DZA65_RS02680 0.20 +0.0
575,576 - DZA65_RS02680 0.20 +2.0
575,576 - DZA65_RS02680 0.20 -1.2
575,607 + DZA65_RS02680 0.21 -0.5
575,633 + DZA65_RS02680 0.22 +0.5
575,812 + -1.5
575,813 - DZA65_RS02680 0.30 +0.5
575,813 - DZA65_RS02680 0.30 -0.5
576,091 - DZA65_RS02680 0.42 -1.3
576,211 + DZA65_RS02680 0.47 +0.3
576,211 + DZA65_RS02680 0.47 +0.7
576,211 + DZA65_RS02680 0.47 -0.4
576,211 + DZA65_RS02680 0.47 +1.7
576,212 - DZA65_RS02680 0.47 -0.8
576,212 - DZA65_RS02680 0.47 -1.0
576,239 + DZA65_RS02680 0.48 -0.2
576,295 + DZA65_RS02680 0.50 -1.8
576,295 + DZA65_RS02680 0.50 -1.1
576,295 + DZA65_RS02680 0.50 -0.5
576,295 + DZA65_RS02680 0.50 -1.5
576,295 + DZA65_RS02680 0.50 -0.5
576,295 + DZA65_RS02680 0.50 -0.5
576,295 + DZA65_RS02680 0.50 -0.3
576,296 - DZA65_RS02680 0.51 -0.5
576,296 - DZA65_RS02680 0.51 +0.5
576,296 - DZA65_RS02680 0.51 -0.3
576,296 - DZA65_RS02680 0.51 -1.5
576,296 - DZA65_RS02680 0.51 -0.4
576,296 - DZA65_RS02680 0.51 -0.3
576,296 - DZA65_RS02680 0.51 +1.5
576,369 - DZA65_RS02680 0.54 +0.2
576,369 - DZA65_RS02680 0.54 +0.8
576,636 + DZA65_RS02680 0.65 -1.0
576,637 - DZA65_RS02680 0.65 +0.3
577,048 - DZA65_RS02680 0.83 -1.6
577,479 + -1.9
577,479 + +0.8
577,483 - -0.6
577,493 + -0.1
577,501 - -0.8
577,503 - -0.1
577,503 - +0.3
577,594 + DZA65_RS02685 0.17 +1.2
577,614 - DZA65_RS02685 0.22 -0.9
577,626 + DZA65_RS02685 0.24 +0.6
577,626 + DZA65_RS02685 0.24 +1.1
577,635 + DZA65_RS02685 0.26 -0.4
577,635 + DZA65_RS02685 0.26 -2.6
577,635 + DZA65_RS02685 0.26 -0.1
577,636 - DZA65_RS02685 0.27 +0.1
577,636 - DZA65_RS02685 0.27 -0.0
577,636 - DZA65_RS02685 0.27 +0.9
577,636 - DZA65_RS02685 0.27 +1.8
577,636 - DZA65_RS02685 0.27 +1.1
577,638 + DZA65_RS02685 0.27 -1.8
577,638 + DZA65_RS02685 0.27 +1.1
577,638 + DZA65_RS02685 0.27 +1.5
577,638 + DZA65_RS02685 0.27 +1.1
577,638 + DZA65_RS02685 0.27 -0.3
577,638 + DZA65_RS02685 0.27 -2.1
577,639 - DZA65_RS02685 0.27 -0.5
577,639 - DZA65_RS02685 0.27 +2.4
577,768 + DZA65_RS02685 0.57 -0.5
577,768 + DZA65_RS02685 0.57 -0.8
577,769 - DZA65_RS02685 0.57 +1.6
577,813 + DZA65_RS02685 0.68 +0.2
577,813 + DZA65_RS02685 0.68 +1.1
577,814 - DZA65_RS02685 0.68 +0.8
577,814 - DZA65_RS02685 0.68 -2.8
577,814 - DZA65_RS02685 0.68 -1.8
577,814 - DZA65_RS02685 0.68 +2.9
577,814 - DZA65_RS02685 0.68 +2.6
577,956 + -0.8
577,957 - +0.5
578,002 + +0.1
578,066 + -1.3
578,067 - -2.1
578,067 - -1.3
578,113 + DZA65_RS02690 0.13 -0.4
578,114 - DZA65_RS02690 0.13 +2.5
578,114 - DZA65_RS02690 0.13 -1.0
578,114 - +0.1
578,114 - DZA65_RS02690 0.13 +0.1
578,215 + DZA65_RS02690 0.23 -1.1

Or see this region's nucleotide sequence