Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02550 and DZA65_RS02555 are separated by 61 nucleotides DZA65_RS02555 and DZA65_RS02560 overlap by 4 nucleotides
DZA65_RS02550: DZA65_RS02550 - ABC transporter ATP-binding protein, at 548,486 to 549,301
_RS02550
DZA65_RS02555: DZA65_RS02555 - ABC transporter substrate-binding protein, at 549,363 to 550,304
_RS02555
DZA65_RS02560: DZA65_RS02560 - iron ABC transporter permease, at 550,301 to 551,299
_RS02560
Position (kb) 549
550
551 Strain fitness (log2 ratio) -2
-1
0
1
2 at 548.389 kb on - strand at 548.415 kb on - strand at 548.428 kb on - strand at 548.428 kb on - strand at 548.508 kb on + strand at 548.509 kb on - strand at 548.517 kb on + strand at 548.517 kb on + strand at 548.517 kb on + strand at 548.560 kb on + strand at 548.561 kb on - strand at 548.561 kb on - strand at 548.575 kb on + strand, within DZA65_RS02550 at 548.576 kb on - strand, within DZA65_RS02550 at 548.695 kb on + strand, within DZA65_RS02550 at 548.695 kb on + strand, within DZA65_RS02550 at 548.696 kb on - strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.796 kb on + strand, within DZA65_RS02550 at 549.072 kb on + strand, within DZA65_RS02550 at 549.072 kb on + strand, within DZA65_RS02550 at 549.073 kb on - strand, within DZA65_RS02550 at 549.073 kb on - strand, within DZA65_RS02550 at 549.073 kb on - strand, within DZA65_RS02550 at 549.073 kb on - strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.075 kb on + strand, within DZA65_RS02550 at 549.076 kb on - strand, within DZA65_RS02550 at 549.076 kb on - strand, within DZA65_RS02550 at 549.076 kb on - strand, within DZA65_RS02550 at 549.076 kb on - strand, within DZA65_RS02550 at 549.185 kb on + strand, within DZA65_RS02550 at 549.211 kb on + strand, within DZA65_RS02550 at 549.283 kb on + strand at 549.284 kb on - strand at 549.297 kb on + strand at 549.297 kb on + strand at 549.297 kb on + strand at 549.297 kb on + strand at 549.297 kb on + strand at 549.297 kb on + strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.298 kb on - strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.314 kb on + strand at 549.314 kb on + strand at 549.315 kb on - strand at 549.621 kb on + strand, within DZA65_RS02555 at 549.621 kb on + strand, within DZA65_RS02555 at 549.621 kb on + strand, within DZA65_RS02555 at 549.622 kb on - strand, within DZA65_RS02555 at 549.622 kb on - strand, within DZA65_RS02555 at 549.681 kb on + strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.730 kb on - strand, within DZA65_RS02555 at 549.730 kb on - strand, within DZA65_RS02555 at 549.745 kb on + strand, within DZA65_RS02555 at 549.746 kb on - strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.811 kb on - strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.945 kb on + strand, within DZA65_RS02555 at 549.945 kb on + strand, within DZA65_RS02555 at 549.946 kb on - strand, within DZA65_RS02555 at 549.946 kb on - strand, within DZA65_RS02555 at 549.962 kb on + strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.972 kb on - strand, within DZA65_RS02555 at 549.985 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.221 kb on + strand at 550.222 kb on - strand at 550.284 kb on + strand at 550.284 kb on + strand at 550.319 kb on + strand at 550.319 kb on + strand at 550.319 kb on + strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.341 kb on + strand at 550.353 kb on + strand at 550.396 kb on + strand at 550.397 kb on - strand at 550.460 kb on + strand, within DZA65_RS02560 at 550.774 kb on + strand, within DZA65_RS02560 at 550.775 kb on - strand, within DZA65_RS02560 at 550.775 kb on - strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.806 kb on - strand, within DZA65_RS02560 at 550.806 kb on - strand, within DZA65_RS02560 at 551.298 kb on - strand at 551.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 548,389 - +0.5 548,415 - -0.5 548,428 - -0.5 548,428 - -0.6 548,508 + +0.2 548,509 - -1.5 548,517 + +0.1 548,517 + +1.2 548,517 + +2.2 548,560 + +1.1 548,561 - -0.9 548,561 - -1.1 548,575 + DZA65_RS02550 0.11 +0.3 548,576 - DZA65_RS02550 0.11 +1.1 548,695 + DZA65_RS02550 0.26 +0.9 548,695 + DZA65_RS02550 0.26 +0.5 548,696 - DZA65_RS02550 0.26 -0.5 548,792 + DZA65_RS02550 0.38 -0.5 548,792 + DZA65_RS02550 0.38 +0.8 548,792 + DZA65_RS02550 0.38 +0.8 548,792 + DZA65_RS02550 0.38 +0.1 548,792 + DZA65_RS02550 0.38 +0.2 548,792 + DZA65_RS02550 0.38 +1.1 548,792 + DZA65_RS02550 0.38 +0.6 548,792 + DZA65_RS02550 0.38 +0.3 548,792 + DZA65_RS02550 0.38 +0.5 548,792 + DZA65_RS02550 0.38 -1.9 548,793 - DZA65_RS02550 0.38 +0.3 548,793 - DZA65_RS02550 0.38 +1.6 548,793 - DZA65_RS02550 0.38 -0.4 548,793 - DZA65_RS02550 0.38 +0.1 548,793 - DZA65_RS02550 0.38 +0.2 548,793 - DZA65_RS02550 0.38 -2.2 548,793 - DZA65_RS02550 0.38 +0.5 548,793 - DZA65_RS02550 0.38 -0.3 548,796 + DZA65_RS02550 0.38 +1.1 549,072 + DZA65_RS02550 0.72 +0.7 549,072 + DZA65_RS02550 0.72 -1.7 549,073 - DZA65_RS02550 0.72 +0.7 549,073 - DZA65_RS02550 0.72 -0.2 549,073 - DZA65_RS02550 0.72 -1.2 549,073 - DZA65_RS02550 0.72 +0.1 549,075 + DZA65_RS02550 0.72 -1.3 549,075 + DZA65_RS02550 0.72 -0.9 549,075 + DZA65_RS02550 0.72 +0.7 549,075 + DZA65_RS02550 0.72 +0.1 549,075 + DZA65_RS02550 0.72 -0.4 549,075 + DZA65_RS02550 0.72 -0.1 549,075 + DZA65_RS02550 0.72 +2.2 549,076 - DZA65_RS02550 0.72 -0.3 549,076 - DZA65_RS02550 0.72 -1.3 549,076 - DZA65_RS02550 0.72 +1.1 549,076 - DZA65_RS02550 0.72 -1.9 549,185 + DZA65_RS02550 0.86 +1.8 549,211 + DZA65_RS02550 0.89 -0.2 549,283 + +1.1 549,284 - +0.6 549,297 + +2.2 549,297 + -0.8 549,297 + -1.3 549,297 + +0.2 549,297 + +1.3 549,297 + -0.9 549,298 - +0.3 549,298 - -1.3 549,298 - +0.5 549,298 - +0.1 549,298 - +1.1 549,298 - +0.9 549,298 - -0.8 549,310 + -0.0 549,310 + +0.6 549,310 + +0.3 549,310 + -0.5 549,310 + -0.1 549,310 + +1.1 549,310 + +1.6 549,310 + +0.9 549,310 + +0.3 549,310 + +0.8 549,310 + +0.4 549,310 + -0.7 549,310 + -0.7 549,310 + +0.1 549,310 + +0.7 549,311 - -0.9 549,311 - -1.1 549,311 - +1.4 549,311 - -2.3 549,311 - -1.7 549,311 - -1.6 549,311 - -0.3 549,311 - -0.9 549,311 - -1.5 549,311 - -2.4 549,311 - +0.5 549,311 - +0.8 549,311 - +0.5 549,311 - -0.5 549,314 + +0.3 549,314 + -0.1 549,315 - -0.9 549,621 + DZA65_RS02555 0.27 +0.1 549,621 + DZA65_RS02555 0.27 +0.3 549,621 + DZA65_RS02555 0.27 -0.4 549,622 - DZA65_RS02555 0.27 +1.1 549,622 - DZA65_RS02555 0.27 +0.5 549,681 + DZA65_RS02555 0.34 +0.1 549,682 - DZA65_RS02555 0.34 +0.1 549,682 - DZA65_RS02555 0.34 -0.4 549,682 - DZA65_RS02555 0.34 +0.7 549,682 - DZA65_RS02555 0.34 +0.3 549,682 - DZA65_RS02555 0.34 -0.9 549,682 - DZA65_RS02555 0.34 -0.1 549,682 - DZA65_RS02555 0.34 -0.8 549,682 - DZA65_RS02555 0.34 +0.2 549,729 + DZA65_RS02555 0.39 +0.2 549,729 + DZA65_RS02555 0.39 -0.9 549,729 + DZA65_RS02555 0.39 +0.5 549,730 - DZA65_RS02555 0.39 -0.3 549,730 - DZA65_RS02555 0.39 +0.8 549,745 + DZA65_RS02555 0.41 +0.1 549,746 - DZA65_RS02555 0.41 +1.1 549,764 + DZA65_RS02555 0.43 -1.7 549,764 + DZA65_RS02555 0.43 -0.5 549,764 + DZA65_RS02555 0.43 -0.7 549,764 + DZA65_RS02555 0.43 -0.3 549,765 - DZA65_RS02555 0.43 +0.8 549,765 - DZA65_RS02555 0.43 -0.9 549,765 - DZA65_RS02555 0.43 +0.5 549,765 - DZA65_RS02555 0.43 -0.3 549,805 + DZA65_RS02555 0.47 -2.1 549,805 + DZA65_RS02555 0.47 +1.8 549,805 + DZA65_RS02555 0.47 +0.3 549,805 + DZA65_RS02555 0.47 -0.3 549,805 + DZA65_RS02555 0.47 -0.5 549,806 - DZA65_RS02555 0.47 -0.5 549,806 - DZA65_RS02555 0.47 -1.3 549,806 - DZA65_RS02555 0.47 +0.6 549,806 - DZA65_RS02555 0.47 -0.5 549,806 - DZA65_RS02555 0.47 +1.2 549,806 - DZA65_RS02555 0.47 -0.1 549,806 - DZA65_RS02555 0.47 -0.9 549,806 - DZA65_RS02555 0.47 -1.9 549,806 - DZA65_RS02555 0.47 -0.3 549,811 - DZA65_RS02555 0.48 +0.3 549,937 + DZA65_RS02555 0.61 +1.1 549,937 + DZA65_RS02555 0.61 +1.4 549,937 + DZA65_RS02555 0.61 -0.9 549,937 + DZA65_RS02555 0.61 +0.3 549,937 + DZA65_RS02555 0.61 +0.1 549,938 - DZA65_RS02555 0.61 -0.2 549,938 - DZA65_RS02555 0.61 -0.9 549,938 - DZA65_RS02555 0.61 -0.5 549,938 - DZA65_RS02555 0.61 -1.7 549,938 - DZA65_RS02555 0.61 -0.5 549,945 + DZA65_RS02555 0.62 -1.7 549,945 + DZA65_RS02555 0.62 +0.1 549,946 - DZA65_RS02555 0.62 -2.1 549,946 - DZA65_RS02555 0.62 +0.3 549,962 + DZA65_RS02555 0.64 -0.9 549,963 - DZA65_RS02555 0.64 -0.9 549,963 - DZA65_RS02555 0.64 +0.3 549,963 - DZA65_RS02555 0.64 -0.2 549,972 - DZA65_RS02555 0.65 -0.3 549,985 - DZA65_RS02555 0.66 +0.1 550,207 - DZA65_RS02555 0.90 -0.5 550,207 - DZA65_RS02555 0.90 -1.0 550,207 - DZA65_RS02555 0.90 -1.9 550,221 + +1.1 550,222 - -0.1 550,284 + +0.9 550,284 + -0.1 550,319 + -0.9 550,319 + -0.3 550,319 + +0.1 550,320 - +0.7 550,320 - +0.1 550,320 - -0.5 550,320 - -1.5 550,320 - -1.3 550,341 + +0.8 550,353 + +0.1 550,396 + -0.5 550,397 - +0.6 550,460 + DZA65_RS02560 0.16 +0.5 550,774 + DZA65_RS02560 0.47 +1.1 550,775 - DZA65_RS02560 0.47 -0.3 550,775 - DZA65_RS02560 0.47 -0.1 550,805 + DZA65_RS02560 0.50 -0.1 550,805 + DZA65_RS02560 0.50 -1.5 550,805 + DZA65_RS02560 0.50 +0.6 550,805 + DZA65_RS02560 0.50 +0.3 550,805 + DZA65_RS02560 0.50 -1.4 550,805 + DZA65_RS02560 0.50 +0.9 550,806 - DZA65_RS02560 0.51 -1.4 550,806 - DZA65_RS02560 0.51 +0.1 551,298 - -0.9 551,302 - +0.5
Or see this region's nucleotide sequence