Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02130 and DZA65_RS02135 overlap by 17 nucleotides DZA65_RS02135 and DZA65_RS02140 are separated by 286 nucleotides
DZA65_RS02130: DZA65_RS02130 - type II toxin-antitoxin system RelE/ParE family toxin, at 468,747 to 469,098
_RS02130
DZA65_RS02135: DZA65_RS02135 - DNA-binding transcriptional regulator, at 469,082 to 469,405
_RS02135
DZA65_RS02140: DZA65_RS02140 - RNA-directed DNA polymerase, at 469,692 to 471,419
_RS02140
Position (kb) 469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 468.087 kb on + strand at 468.108 kb on + strand at 468.108 kb on + strand at 468.108 kb on + strand at 468.108 kb on + strand at 468.108 kb on + strand at 468.109 kb on - strand at 468.109 kb on - strand at 468.163 kb on + strand at 468.163 kb on + strand at 468.163 kb on + strand at 468.164 kb on - strand at 468.164 kb on - strand at 468.164 kb on - strand at 468.171 kb on + strand at 468.171 kb on + strand at 468.182 kb on + strand at 468.183 kb on - strand at 468.183 kb on - strand at 468.183 kb on - strand at 468.191 kb on + strand at 468.192 kb on - strand at 468.192 kb on - strand at 468.194 kb on + strand at 468.194 kb on + strand at 468.194 kb on + strand at 468.194 kb on + strand at 468.194 kb on + strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.207 kb on + strand at 468.207 kb on + strand at 468.207 kb on + strand at 468.229 kb on - strand at 468.229 kb on - strand at 468.229 kb on - strand at 468.274 kb on + strand at 468.274 kb on + strand at 468.275 kb on - strand at 468.276 kb on + strand at 468.276 kb on + strand at 468.276 kb on + strand at 468.276 kb on + strand at 468.276 kb on + strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.279 kb on + strand at 468.279 kb on + strand at 468.279 kb on + strand at 468.279 kb on + strand at 468.279 kb on + strand at 468.280 kb on - strand at 468.280 kb on - strand at 468.280 kb on - strand at 468.280 kb on - strand at 468.280 kb on - strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.295 kb on + strand at 468.324 kb on - strand at 468.353 kb on + strand at 468.353 kb on + strand at 468.358 kb on + strand at 468.359 kb on - strand at 468.359 kb on - strand at 468.384 kb on - strand at 468.398 kb on + strand at 468.399 kb on - strand at 468.435 kb on - strand at 468.481 kb on + strand at 468.481 kb on + strand at 468.481 kb on + strand at 468.482 kb on - strand at 468.482 kb on - strand at 468.482 kb on - strand at 468.487 kb on + strand at 468.537 kb on + strand at 468.538 kb on - strand at 468.564 kb on - strand at 468.588 kb on - strand at 468.588 kb on - strand at 468.649 kb on + strand at 468.650 kb on - strand at 468.675 kb on + strand at 468.675 kb on + strand at 468.676 kb on - strand at 468.676 kb on - strand at 468.685 kb on - strand at 468.701 kb on + strand at 468.706 kb on + strand at 468.707 kb on - strand at 468.722 kb on - strand at 468.725 kb on + strand at 468.774 kb on - strand at 468.776 kb on + strand at 468.776 kb on + strand at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.942 kb on + strand, within DZA65_RS02130 at 468.954 kb on + strand, within DZA65_RS02130 at 468.954 kb on + strand, within DZA65_RS02130 at 468.955 kb on - strand, within DZA65_RS02130 at 468.955 kb on - strand, within DZA65_RS02130 at 468.955 kb on - strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.021 kb on - strand, within DZA65_RS02130 at 469.021 kb on - strand, within DZA65_RS02130 at 469.021 kb on - strand, within DZA65_RS02130 at 469.042 kb on - strand, within DZA65_RS02130 at 469.042 kb on - strand, within DZA65_RS02130 at 469.042 kb on - strand, within DZA65_RS02130 at 469.053 kb on + strand, within DZA65_RS02130 at 469.053 kb on + strand, within DZA65_RS02130 at 469.059 kb on + strand at 469.060 kb on - strand, within DZA65_RS02130 at 469.204 kb on + strand, within DZA65_RS02135 at 469.205 kb on - strand, within DZA65_RS02135 at 469.237 kb on + strand, within DZA65_RS02135 at 469.237 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.258 kb on - strand, within DZA65_RS02135 at 469.414 kb on + strand at 469.414 kb on + strand at 469.414 kb on + strand at 469.414 kb on + strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.422 kb on + strand at 469.423 kb on - strand at 469.423 kb on - strand at 469.423 kb on - strand at 469.423 kb on - strand at 469.462 kb on + strand at 469.463 kb on - strand at 469.463 kb on - strand at 469.479 kb on + strand at 469.509 kb on + strand at 469.509 kb on + strand at 469.509 kb on + strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.516 kb on + strand at 469.517 kb on - strand at 469.517 kb on - strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.557 kb on - strand at 469.557 kb on - strand at 469.616 kb on + strand at 469.617 kb on - strand at 469.617 kb on - strand at 469.621 kb on + strand at 469.682 kb on - strand at 469.712 kb on + strand at 469.713 kb on - strand at 469.830 kb on - strand at 469.919 kb on + strand, within DZA65_RS02140 at 469.919 kb on + strand, within DZA65_RS02140 at 469.920 kb on - strand, within DZA65_RS02140 at 469.950 kb on + strand, within DZA65_RS02140 at 469.952 kb on + strand, within DZA65_RS02140 at 470.006 kb on + strand, within DZA65_RS02140 at 470.006 kb on + strand, within DZA65_RS02140 at 470.007 kb on - strand, within DZA65_RS02140 at 470.007 kb on - strand, within DZA65_RS02140 at 470.240 kb on - strand, within DZA65_RS02140 at 470.326 kb on + strand, within DZA65_RS02140 at 470.334 kb on - strand, within DZA65_RS02140
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 468,087 + -1.5 468,108 + +0.9 468,108 + +1.5 468,108 + -1.2 468,108 + -0.9 468,108 + +0.7 468,109 - -0.5 468,109 - +2.1 468,163 + +0.8 468,163 + -1.5 468,163 + +1.9 468,164 - -0.1 468,164 - -0.2 468,164 - +0.2 468,171 + -0.6 468,171 + -1.3 468,182 + +1.1 468,183 - -0.9 468,183 - -0.5 468,183 - -0.0 468,191 + -0.1 468,192 - +0.4 468,192 - -1.2 468,194 + -0.5 468,194 + -0.5 468,194 + -0.9 468,194 + -1.2 468,194 + +0.5 468,195 - -1.2 468,195 - +0.6 468,195 - -0.2 468,195 - -1.1 468,195 - +0.4 468,195 - +0.5 468,195 - -0.2 468,207 + -0.5 468,207 + -1.9 468,207 + +1.1 468,229 - -0.2 468,229 - -0.5 468,229 - -0.1 468,274 + +0.3 468,274 + +1.1 468,275 - +1.3 468,276 + +1.7 468,276 + -0.2 468,276 + +0.1 468,276 + -0.5 468,276 + +0.1 468,277 - -0.5 468,277 - -0.8 468,277 - +0.3 468,277 - +2.7 468,277 - +1.4 468,277 - +1.8 468,277 - -1.3 468,277 - -0.1 468,279 + +0.9 468,279 + +0.7 468,279 + -1.2 468,279 + -0.2 468,279 + -1.2 468,280 - +0.7 468,280 - +1.7 468,280 - -0.4 468,280 - -1.7 468,280 - -1.5 468,281 + -1.2 468,281 + -0.7 468,281 + +0.7 468,281 + -0.8 468,281 + -0.8 468,281 + +0.1 468,281 + +0.5 468,281 + -0.3 468,281 + +1.1 468,281 + -0.4 468,281 + -0.5 468,281 + +0.1 468,281 + -0.2 468,282 - +0.9 468,282 - +0.3 468,282 - +0.5 468,282 - +1.5 468,282 - -1.9 468,282 - -0.2 468,282 - +0.2 468,282 - -0.9 468,282 - -0.5 468,282 - -0.5 468,282 - -1.0 468,282 - -0.2 468,282 - -2.6 468,282 - -0.8 468,282 - +0.5 468,282 - +0.3 468,282 - +1.1 468,282 - -0.0 468,282 - -2.1 468,282 - +1.2 468,282 - +1.1 468,282 - +0.8 468,295 + -0.4 468,324 - +0.1 468,353 + +0.4 468,353 + -0.7 468,358 + +1.3 468,359 - -0.5 468,359 - -2.2 468,384 - -0.1 468,398 + -0.5 468,399 - +1.1 468,435 - +1.4 468,481 + -1.3 468,481 + -0.5 468,481 + +0.1 468,482 - -1.2 468,482 - -0.2 468,482 - -0.3 468,487 + +2.0 468,537 + +0.5 468,538 - +0.5 468,564 - -0.4 468,588 - -0.3 468,588 - -0.5 468,649 + -1.2 468,650 - +0.0 468,675 + +0.3 468,675 + -3.2 468,676 - +0.5 468,676 - +0.1 468,685 - +0.1 468,701 + -0.5 468,706 + +0.1 468,707 - -0.5 468,722 - -1.5 468,725 + +1.7 468,774 - +1.8 468,776 + -0.5 468,776 + -0.8 468,814 + DZA65_RS02130 0.19 +0.1 468,814 + DZA65_RS02130 0.19 +2.1 468,814 + DZA65_RS02130 0.19 -0.8 468,814 + DZA65_RS02130 0.19 +1.3 468,814 + DZA65_RS02130 0.19 +0.3 468,814 + DZA65_RS02130 0.19 -0.8 468,814 + DZA65_RS02130 0.19 -1.7 468,814 + DZA65_RS02130 0.19 -0.9 468,814 + DZA65_RS02130 0.19 -1.2 468,815 - DZA65_RS02130 0.19 +0.7 468,815 - DZA65_RS02130 0.19 -0.9 468,815 - DZA65_RS02130 0.19 -0.9 468,815 - DZA65_RS02130 0.19 -0.0 468,815 - DZA65_RS02130 0.19 +1.7 468,815 - DZA65_RS02130 0.19 +0.1 468,815 - DZA65_RS02130 0.19 +0.6 468,815 - DZA65_RS02130 0.19 -1.2 468,815 - DZA65_RS02130 0.19 +0.6 468,913 + DZA65_RS02130 0.47 +0.6 468,913 + DZA65_RS02130 0.47 -0.8 468,913 + DZA65_RS02130 0.47 +1.8 468,913 + DZA65_RS02130 0.47 +0.8 468,914 - DZA65_RS02130 0.47 +0.4 468,914 - DZA65_RS02130 0.47 +0.1 468,914 - DZA65_RS02130 0.47 -0.6 468,914 - DZA65_RS02130 0.47 -0.0 468,914 - DZA65_RS02130 0.47 -0.7 468,942 + DZA65_RS02130 0.55 -0.2 468,954 + DZA65_RS02130 0.59 +0.0 468,954 + DZA65_RS02130 0.59 +1.4 468,955 - DZA65_RS02130 0.59 +0.1 468,955 - DZA65_RS02130 0.59 +2.1 468,955 - DZA65_RS02130 0.59 +0.6 469,020 + DZA65_RS02130 0.78 +0.1 469,020 + DZA65_RS02130 0.78 +0.3 469,020 + DZA65_RS02130 0.78 +0.3 469,020 + DZA65_RS02130 0.78 +2.3 469,021 - DZA65_RS02130 0.78 +0.3 469,021 - DZA65_RS02130 0.78 -0.8 469,021 - DZA65_RS02130 0.78 -1.2 469,042 - DZA65_RS02130 0.84 +1.4 469,042 - DZA65_RS02130 0.84 +1.1 469,042 - DZA65_RS02130 0.84 -0.9 469,053 + DZA65_RS02130 0.87 -0.5 469,053 + DZA65_RS02130 0.87 +0.3 469,059 + -0.9 469,060 - DZA65_RS02130 0.89 +0.2 469,204 + DZA65_RS02135 0.38 -0.1 469,205 - DZA65_RS02135 0.38 +0.8 469,237 + DZA65_RS02135 0.48 +0.5 469,237 + DZA65_RS02135 0.48 +0.2 469,257 + DZA65_RS02135 0.54 -0.4 469,257 + DZA65_RS02135 0.54 +0.5 469,257 + DZA65_RS02135 0.54 +0.6 469,257 + DZA65_RS02135 0.54 +0.1 469,258 - DZA65_RS02135 0.54 +0.8 469,414 + -0.5 469,414 + -0.4 469,414 + +0.7 469,414 + -1.9 469,415 - +0.1 469,415 - +0.7 469,415 - -0.7 469,415 - +0.6 469,415 - +1.1 469,415 - -0.1 469,415 - -0.1 469,422 + +2.1 469,423 - -0.5 469,423 - -1.0 469,423 - +1.3 469,423 - -0.2 469,462 + -1.1 469,463 - +1.3 469,463 - +0.7 469,479 + +0.4 469,509 + +0.5 469,509 + -1.7 469,509 + -0.3 469,510 - +1.1 469,510 - +1.1 469,510 - -0.0 469,510 - -0.7 469,510 - -0.0 469,510 - -0.7 469,516 + +1.7 469,517 - -0.2 469,517 - +0.6 469,556 + -1.8 469,556 + +0.2 469,556 + -1.4 469,556 + -0.1 469,556 + -0.3 469,556 + +1.7 469,556 + +0.8 469,557 - -0.7 469,557 - -0.6 469,616 + -2.2 469,617 - -1.9 469,617 - +0.4 469,621 + -1.2 469,682 - +0.3 469,712 + -0.0 469,713 - -1.7 469,830 - -0.0 469,919 + DZA65_RS02140 0.13 -2.5 469,919 + DZA65_RS02140 0.13 +0.8 469,920 - DZA65_RS02140 0.13 -1.7 469,950 + DZA65_RS02140 0.15 -0.2 469,952 + DZA65_RS02140 0.15 +0.6 470,006 + DZA65_RS02140 0.18 -0.9 470,006 + DZA65_RS02140 0.18 +0.8 470,007 - DZA65_RS02140 0.18 -0.2 470,007 - DZA65_RS02140 0.18 +0.1 470,240 - DZA65_RS02140 0.32 -1.5 470,326 + DZA65_RS02140 0.37 -1.4 470,334 - DZA65_RS02140 0.37 -0.2
Or see this region's nucleotide sequence