Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01585 and DZA65_RS01590 are separated by 236 nucleotides DZA65_RS01590 and DZA65_RS01595 are separated by 210 nucleotides
DZA65_RS01585: DZA65_RS01585 - serine endoprotease DegQ, at 343,774 to 345,144
_RS01585
DZA65_RS01590: DZA65_RS01590 - DUF1043 family protein, at 345,381 to 345,785
_RS01590
DZA65_RS01595: DZA65_RS01595 - cell division protein ZapE, at 345,996 to 347,126
_RS01595
Position (kb) 345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 344.427 kb on + strand, within DZA65_RS01585 at 344.762 kb on + strand, within DZA65_RS01585 at 344.762 kb on + strand, within DZA65_RS01585 at 344.762 kb on + strand, within DZA65_RS01585 at 344.763 kb on - strand, within DZA65_RS01585 at 344.763 kb on - strand, within DZA65_RS01585 at 344.834 kb on + strand, within DZA65_RS01585 at 344.834 kb on + strand, within DZA65_RS01585 at 344.911 kb on - strand, within DZA65_RS01585 at 344.911 kb on - strand, within DZA65_RS01585 at 344.932 kb on - strand, within DZA65_RS01585 at 344.959 kb on + strand, within DZA65_RS01585 at 344.959 kb on + strand, within DZA65_RS01585 at 344.959 kb on + strand, within DZA65_RS01585 at 344.959 kb on + strand, within DZA65_RS01585 at 344.959 kb on + strand, within DZA65_RS01585 at 344.960 kb on - strand, within DZA65_RS01585 at 344.960 kb on - strand, within DZA65_RS01585 at 344.989 kb on + strand, within DZA65_RS01585 at 344.989 kb on + strand, within DZA65_RS01585 at 345.001 kb on + strand, within DZA65_RS01585 at 345.001 kb on + strand, within DZA65_RS01585 at 345.001 kb on + strand, within DZA65_RS01585 at 345.046 kb on + strand at 345.047 kb on - strand at 345.102 kb on + strand at 345.121 kb on - strand at 345.121 kb on - strand at 345.121 kb on - strand at 345.121 kb on - strand at 345.121 kb on - strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.172 kb on + strand at 345.179 kb on - strand at 345.179 kb on - strand at 345.189 kb on + strand at 345.189 kb on + strand at 345.189 kb on + strand at 345.189 kb on + strand at 345.189 kb on + strand at 345.190 kb on - strand at 345.190 kb on - strand at 345.190 kb on - strand at 345.190 kb on - strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.192 kb on - strand at 345.192 kb on - strand at 345.192 kb on - strand at 345.192 kb on - strand at 345.194 kb on - strand at 345.237 kb on - strand at 345.249 kb on + strand at 345.249 kb on + strand at 345.249 kb on + strand at 345.250 kb on - strand at 345.267 kb on + strand at 345.267 kb on + strand at 345.267 kb on + strand at 345.268 kb on - strand at 345.333 kb on + strand at 345.333 kb on + strand at 345.333 kb on + strand at 345.334 kb on - strand at 345.350 kb on + strand at 345.351 kb on - strand at 345.387 kb on - strand at 345.387 kb on - strand at 345.387 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.837 kb on - strand at 345.837 kb on - strand at 345.837 kb on - strand at 345.837 kb on - strand at 345.837 kb on - strand at 345.837 kb on - strand at 345.840 kb on - strand at 345.840 kb on - strand at 345.846 kb on + strand at 345.846 kb on + strand at 345.846 kb on + strand at 345.847 kb on - strand at 345.847 kb on - strand at 345.847 kb on - strand at 345.847 kb on - strand at 345.847 kb on - strand at 345.847 kb on - strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.931 kb on + strand at 345.964 kb on + strand at 345.964 kb on + strand at 345.964 kb on + strand at 345.964 kb on + strand at 345.964 kb on + strand at 345.965 kb on - strand at 345.965 kb on - strand at 345.965 kb on - strand at 346.050 kb on + strand at 346.050 kb on + strand at 346.050 kb on + strand at 346.129 kb on + strand, within DZA65_RS01595 at 346.130 kb on - strand, within DZA65_RS01595 at 346.130 kb on - strand, within DZA65_RS01595 at 346.130 kb on - strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.248 kb on - strand, within DZA65_RS01595 at 346.398 kb on - strand, within DZA65_RS01595 at 346.446 kb on - strand, within DZA65_RS01595 at 346.523 kb on + strand, within DZA65_RS01595 at 346.523 kb on + strand, within DZA65_RS01595 at 346.524 kb on - strand, within DZA65_RS01595 at 346.542 kb on + strand, within DZA65_RS01595 at 346.580 kb on + strand, within DZA65_RS01595 at 346.609 kb on + strand, within DZA65_RS01595 at 346.609 kb on + strand, within DZA65_RS01595 at 346.609 kb on + strand, within DZA65_RS01595 at 346.610 kb on - strand, within DZA65_RS01595 at 346.610 kb on - strand, within DZA65_RS01595 at 346.610 kb on - strand, within DZA65_RS01595 at 346.610 kb on - strand, within DZA65_RS01595 at 346.610 kb on - strand, within DZA65_RS01595 at 346.646 kb on + strand, within DZA65_RS01595 at 346.646 kb on + strand, within DZA65_RS01595 at 346.647 kb on - strand, within DZA65_RS01595 at 346.668 kb on + strand, within DZA65_RS01595 at 346.668 kb on + strand, within DZA65_RS01595 at 346.668 kb on + strand, within DZA65_RS01595 at 346.668 kb on + strand, within DZA65_RS01595 at 346.668 kb on + strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.769 kb on + strand, within DZA65_RS01595 at 346.770 kb on - strand, within DZA65_RS01595 at 346.770 kb on - strand, within DZA65_RS01595
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 344,427 + DZA65_RS01585 0.48 -0.4 344,762 + DZA65_RS01585 0.72 +0.1 344,762 + DZA65_RS01585 0.72 +0.3 344,762 + DZA65_RS01585 0.72 -0.1 344,763 - DZA65_RS01585 0.72 -1.5 344,763 - DZA65_RS01585 0.72 -0.4 344,834 + DZA65_RS01585 0.77 -0.2 344,834 + DZA65_RS01585 0.77 -1.4 344,911 - DZA65_RS01585 0.83 +1.1 344,911 - DZA65_RS01585 0.83 -0.2 344,932 - DZA65_RS01585 0.84 -1.2 344,959 + DZA65_RS01585 0.86 -0.3 344,959 + DZA65_RS01585 0.86 -0.4 344,959 + DZA65_RS01585 0.86 -0.4 344,959 + DZA65_RS01585 0.86 +0.6 344,959 + DZA65_RS01585 0.86 -1.3 344,960 - DZA65_RS01585 0.87 -0.8 344,960 - DZA65_RS01585 0.87 -0.0 344,989 + DZA65_RS01585 0.89 -0.9 344,989 + DZA65_RS01585 0.89 -1.9 345,001 + DZA65_RS01585 0.89 -0.7 345,001 + DZA65_RS01585 0.89 -1.0 345,001 + DZA65_RS01585 0.89 +1.6 345,046 + +2.1 345,047 - +0.7 345,102 + -1.7 345,121 - -0.9 345,121 - +1.3 345,121 - -0.4 345,121 - -0.4 345,121 - -0.9 345,122 + +0.1 345,122 + -0.6 345,122 + +0.1 345,122 + +2.3 345,122 + -1.0 345,122 + +1.1 345,122 + -2.3 345,122 + -1.4 345,122 + -1.0 345,122 + -1.3 345,122 + +0.5 345,123 - -1.0 345,123 - -0.4 345,123 - -1.2 345,123 - -0.1 345,123 - +0.0 345,123 - -1.2 345,123 - -2.3 345,123 - +0.6 345,123 - -0.7 345,123 - -0.4 345,123 - +0.3 345,124 + +0.7 345,124 + -1.2 345,124 + -1.1 345,124 + -1.2 345,124 + -0.3 345,124 + -0.9 345,124 + -0.4 345,124 + +0.1 345,124 + -1.3 345,124 + -0.8 345,124 + +0.7 345,125 - -0.3 345,125 - +1.5 345,125 - +0.9 345,125 - +1.3 345,125 - +1.8 345,125 - -2.0 345,125 - +0.1 345,125 - +0.1 345,125 - -0.0 345,125 - +2.1 345,125 - +1.1 345,125 - +0.4 345,125 - -0.4 345,125 - -0.4 345,125 - +0.7 345,172 + +0.1 345,179 - +0.4 345,179 - +0.7 345,189 + +0.6 345,189 + -0.4 345,189 + +1.1 345,189 + -0.3 345,189 + +1.1 345,190 - -2.4 345,190 - +0.1 345,190 - +1.9 345,190 - -0.4 345,191 + -1.0 345,191 + +0.6 345,191 + -0.0 345,191 + +2.1 345,191 + -0.4 345,191 + +0.1 345,191 + +0.4 345,191 + +0.3 345,192 - -0.9 345,192 - -0.1 345,192 - -0.1 345,192 - -0.9 345,194 - +0.4 345,237 - +0.1 345,249 + -1.4 345,249 + -0.4 345,249 + -2.1 345,250 - -1.2 345,267 + +3.4 345,267 + +1.9 345,267 + +0.1 345,268 - -0.4 345,333 + +1.7 345,333 + +0.6 345,333 + -0.2 345,334 - -0.3 345,350 + +0.7 345,351 - +1.5 345,387 - -1.3 345,387 - -1.4 345,387 - -2.2 345,834 - +0.4 345,834 - +0.9 345,834 - +2.1 345,834 - -0.1 345,834 - -2.2 345,834 - -0.1 345,834 - +1.3 345,834 - -1.7 345,837 - +0.8 345,837 - -0.9 345,837 - -0.2 345,837 - +0.0 345,837 - -1.3 345,837 - -1.4 345,840 - +1.1 345,840 - +0.9 345,846 + -2.5 345,846 + +0.1 345,846 + -2.8 345,847 - +0.7 345,847 - -1.3 345,847 - +1.1 345,847 - +0.9 345,847 - +0.1 345,847 - -1.3 345,880 + -0.7 345,880 + +0.4 345,880 + -0.5 345,880 + -0.0 345,881 - -0.4 345,881 - -0.1 345,881 - +0.1 345,881 - +0.4 345,931 + +0.1 345,964 + +0.2 345,964 + +0.6 345,964 + -0.9 345,964 + -0.0 345,964 + +1.1 345,965 - -1.4 345,965 - -0.9 345,965 - -1.0 346,050 + +0.4 346,050 + -1.0 346,050 + +0.3 346,129 + DZA65_RS01595 0.12 -0.4 346,130 - DZA65_RS01595 0.12 -0.4 346,130 - DZA65_RS01595 0.12 -0.4 346,130 - DZA65_RS01595 0.12 -1.2 346,221 + DZA65_RS01595 0.20 +0.6 346,221 + DZA65_RS01595 0.20 +2.1 346,221 + DZA65_RS01595 0.20 +0.7 346,221 + DZA65_RS01595 0.20 -0.9 346,221 + DZA65_RS01595 0.20 -1.7 346,221 + DZA65_RS01595 0.20 -0.4 346,221 + DZA65_RS01595 0.20 -0.9 346,221 + DZA65_RS01595 0.20 -1.3 346,221 + DZA65_RS01595 0.20 -0.2 346,222 - DZA65_RS01595 0.20 -0.1 346,222 - DZA65_RS01595 0.20 +0.1 346,222 - DZA65_RS01595 0.20 -1.2 346,222 - DZA65_RS01595 0.20 -1.0 346,222 - DZA65_RS01595 0.20 -0.2 346,222 - DZA65_RS01595 0.20 +0.8 346,222 - DZA65_RS01595 0.20 -0.2 346,222 - DZA65_RS01595 0.20 -1.6 346,222 - DZA65_RS01595 0.20 -1.3 346,222 - DZA65_RS01595 0.20 +1.9 346,222 - DZA65_RS01595 0.20 +0.1 346,222 - DZA65_RS01595 0.20 +0.6 346,222 - DZA65_RS01595 0.20 -0.6 346,222 - DZA65_RS01595 0.20 +0.4 346,223 + DZA65_RS01595 0.20 -3.2 346,223 + DZA65_RS01595 0.20 -1.7 346,223 + DZA65_RS01595 0.20 +1.6 346,223 + DZA65_RS01595 0.20 +0.8 346,223 + +0.1 346,223 + DZA65_RS01595 0.20 +0.0 346,223 + DZA65_RS01595 0.20 -0.4 346,223 + DZA65_RS01595 0.20 -1.4 346,223 + DZA65_RS01595 0.20 -0.9 346,223 + +0.6 346,223 + DZA65_RS01595 0.20 +0.7 346,223 + DZA65_RS01595 0.20 +0.3 346,223 + DZA65_RS01595 0.20 -0.7 346,223 + DZA65_RS01595 0.20 -0.8 346,224 - DZA65_RS01595 0.20 -0.6 346,224 - DZA65_RS01595 0.20 -0.7 346,224 - DZA65_RS01595 0.20 -0.2 346,224 - DZA65_RS01595 0.20 +0.7 346,224 - DZA65_RS01595 0.20 -1.9 346,224 - DZA65_RS01595 0.20 -0.7 346,224 - DZA65_RS01595 0.20 +0.8 346,224 - DZA65_RS01595 0.20 -0.3 346,224 - DZA65_RS01595 0.20 +2.1 346,224 - DZA65_RS01595 0.20 -1.9 346,224 - DZA65_RS01595 0.20 +0.9 346,224 - DZA65_RS01595 0.20 +0.2 346,224 - DZA65_RS01595 0.20 -0.2 346,224 - DZA65_RS01595 0.20 -1.6 346,224 - DZA65_RS01595 0.20 -2.4 346,224 - DZA65_RS01595 0.20 -1.0 346,248 - DZA65_RS01595 0.22 -0.2 346,398 - DZA65_RS01595 0.36 +1.9 346,446 - DZA65_RS01595 0.40 -1.2 346,523 + DZA65_RS01595 0.47 -1.7 346,523 + DZA65_RS01595 0.47 +0.6 346,524 - DZA65_RS01595 0.47 -0.4 346,542 + DZA65_RS01595 0.48 -0.9 346,580 + DZA65_RS01595 0.52 -0.9 346,609 + DZA65_RS01595 0.54 -0.4 346,609 + DZA65_RS01595 0.54 -0.6 346,609 + DZA65_RS01595 0.54 -1.4 346,610 - DZA65_RS01595 0.54 +0.1 346,610 - DZA65_RS01595 0.54 +0.1 346,610 - DZA65_RS01595 0.54 -0.4 346,610 - DZA65_RS01595 0.54 -0.9 346,610 - DZA65_RS01595 0.54 +0.8 346,646 + DZA65_RS01595 0.57 -1.3 346,646 + DZA65_RS01595 0.57 -0.1 346,647 - DZA65_RS01595 0.58 -1.6 346,668 + DZA65_RS01595 0.59 +0.3 346,668 + DZA65_RS01595 0.59 -1.0 346,668 + DZA65_RS01595 0.59 -2.4 346,668 + DZA65_RS01595 0.59 +0.9 346,668 + DZA65_RS01595 0.59 +1.0 346,669 - DZA65_RS01595 0.60 -1.2 346,669 - DZA65_RS01595 0.60 +0.6 346,669 - DZA65_RS01595 0.60 +0.7 346,669 - DZA65_RS01595 0.60 +0.9 346,669 - DZA65_RS01595 0.60 +0.1 346,669 - DZA65_RS01595 0.60 -0.2 346,669 - DZA65_RS01595 0.60 -1.4 346,769 + DZA65_RS01595 0.68 -0.8 346,770 - DZA65_RS01595 0.68 +0.5 346,770 - DZA65_RS01595 0.68 +1.1
Or see this region's nucleotide sequence