Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01425

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01415 and DZA65_RS01420 overlap by 4 nucleotidesDZA65_RS01420 and DZA65_RS01425 are separated by 24 nucleotidesDZA65_RS01425 and DZA65_RS01430 overlap by 11 nucleotides DZA65_RS01415: DZA65_RS01415 - rod shape-determining protein MreC, at 311,709 to 312,827 _RS01415 DZA65_RS01420: DZA65_RS01420 - rod shape-determining protein MreD, at 312,824 to 313,312 _RS01420 DZA65_RS01425: DZA65_RS01425 - septum formation inhibitor Maf, at 313,337 to 313,930 _RS01425 DZA65_RS01430: DZA65_RS01430 - ribonuclease G, at 313,920 to 315,389 _RS01430 Position (kb) 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 312.668 kb on + strand, within DZA65_RS01415at 312.743 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.833 kb on + strandat 313.310 kb on + strandat 313.310 kb on + strandat 313.310 kb on + strandat 313.310 kb on + strandat 313.311 kb on - strandat 313.311 kb on - strandat 313.313 kb on + strandat 313.314 kb on - strandat 313.314 kb on - strandat 313.324 kb on + strandat 313.325 kb on - strandat 313.349 kb on + strandat 313.349 kb on + strandat 313.350 kb on - strandat 313.350 kb on - strandat 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.707 kb on + strand, within DZA65_RS01425at 313.708 kb on - strand, within DZA65_RS01425at 313.708 kb on - strand, within DZA65_RS01425at 313.738 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.746 kb on - strandat 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.784 kb on + strand, within DZA65_RS01425at 313.835 kb on + strand, within DZA65_RS01425at 313.835 kb on + strand, within DZA65_RS01425at 313.835 kb on + strand, within DZA65_RS01425at 313.835 kb on + strand, within DZA65_RS01425at 313.836 kb on - strandat 313.836 kb on - strand, within DZA65_RS01425at 313.904 kb on - strandat 313.971 kb on + strandat 314.040 kb on - strandat 314.043 kb on + strandat 314.043 kb on + strandat 314.147 kb on + strand, within DZA65_RS01430at 314.304 kb on + strand, within DZA65_RS01430at 314.352 kb on - strand, within DZA65_RS01430at 314.423 kb on + strand, within DZA65_RS01430at 314.424 kb on - strand, within DZA65_RS01430at 314.424 kb on - strand, within DZA65_RS01430at 314.634 kb on + strand, within DZA65_RS01430at 314.634 kb on + strand, within DZA65_RS01430at 314.635 kb on - strand, within DZA65_RS01430at 314.635 kb on - strand, within DZA65_RS01430at 314.664 kb on + strand, within DZA65_RS01430at 314.697 kb on + strand, within DZA65_RS01430at 314.697 kb on + strand, within DZA65_RS01430at 314.698 kb on - strand, within DZA65_RS01430

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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312,668 + DZA65_RS01415 0.86 -2.1
312,743 + -2.1
312,829 + -0.4
312,829 + -0.4
312,829 + -1.4
312,829 + -0.1
312,829 + -0.8
312,829 + -1.1
312,829 + +0.2
312,833 + +1.0
313,310 + -1.1
313,310 + +0.5
313,310 + -2.6
313,310 + -0.8
313,311 - +1.8
313,311 - +0.5
313,313 + -2.0
313,314 - -1.4
313,314 - -0.4
313,324 + +0.9
313,325 - -1.1
313,349 + +0.2
313,349 + -3.1
313,350 - +0.1
313,350 - +1.2
313,466 + DZA65_RS01425 0.22 -1.4
313,466 + DZA65_RS01425 0.22 -0.7
313,466 + DZA65_RS01425 0.22 -1.1
313,466 + DZA65_RS01425 0.22 -0.1
313,466 + DZA65_RS01425 0.22 +1.6
313,466 + DZA65_RS01425 0.22 -0.6
313,467 - DZA65_RS01425 0.22 -0.0
313,467 - DZA65_RS01425 0.22 -0.2
313,467 - DZA65_RS01425 0.22 +1.8
313,467 - DZA65_RS01425 0.22 -0.3
313,467 - DZA65_RS01425 0.22 +0.2
313,467 - DZA65_RS01425 0.22 -0.4
313,707 + DZA65_RS01425 0.62 -0.7
313,708 - DZA65_RS01425 0.62 +1.2
313,708 - DZA65_RS01425 0.62 +0.7
313,738 + DZA65_RS01425 0.68 +0.7
313,745 + DZA65_RS01425 0.69 +0.2
313,745 + DZA65_RS01425 0.69 +0.2
313,745 + DZA65_RS01425 0.69 +2.2
313,745 + DZA65_RS01425 0.69 +1.2
313,745 + DZA65_RS01425 0.69 -0.6
313,745 + DZA65_RS01425 0.69 -0.4
313,745 + DZA65_RS01425 0.69 -0.3
313,745 + DZA65_RS01425 0.69 +0.6
313,745 + DZA65_RS01425 0.69 +0.1
313,745 + DZA65_RS01425 0.69 -1.0
313,745 + DZA65_RS01425 0.69 +0.6
313,745 + DZA65_RS01425 0.69 +1.2
313,745 + DZA65_RS01425 0.69 -0.6
313,745 + DZA65_RS01425 0.69 +1.8
313,745 + DZA65_RS01425 0.69 -0.8
313,745 + DZA65_RS01425 0.69 +1.4
313,746 - -2.3
313,746 - DZA65_RS01425 0.69 -1.8
313,746 - DZA65_RS01425 0.69 -0.8
313,746 - DZA65_RS01425 0.69 +0.6
313,746 - DZA65_RS01425 0.69 -0.2
313,746 - DZA65_RS01425 0.69 +0.7
313,746 - DZA65_RS01425 0.69 -2.4
313,746 - DZA65_RS01425 0.69 -0.7
313,746 - DZA65_RS01425 0.69 -0.6
313,746 - DZA65_RS01425 0.69 +0.9
313,746 - DZA65_RS01425 0.69 +0.9
313,746 - DZA65_RS01425 0.69 +1.2
313,746 - DZA65_RS01425 0.69 -0.4
313,746 - DZA65_RS01425 0.69 +1.2
313,784 + DZA65_RS01425 0.75 -0.4
313,835 + DZA65_RS01425 0.84 -0.5
313,835 + DZA65_RS01425 0.84 -0.8
313,835 + DZA65_RS01425 0.84 +0.9
313,835 + DZA65_RS01425 0.84 -0.8
313,836 - -0.0
313,836 - DZA65_RS01425 0.84 -0.4
313,904 - +1.7
313,971 + -0.4
314,040 - +0.2
314,043 + +0.6
314,043 + -0.4
314,147 + DZA65_RS01430 0.15 +0.5
314,304 + DZA65_RS01430 0.26 -1.4
314,352 - DZA65_RS01430 0.29 -0.8
314,423 + DZA65_RS01430 0.34 -0.8
314,424 - DZA65_RS01430 0.34 -0.0
314,424 - DZA65_RS01430 0.34 -1.4
314,634 + DZA65_RS01430 0.49 -0.5
314,634 + DZA65_RS01430 0.49 +0.6
314,635 - DZA65_RS01430 0.49 +0.0
314,635 - DZA65_RS01430 0.49 -0.8
314,664 + DZA65_RS01430 0.51 +1.2
314,697 + DZA65_RS01430 0.53 -1.4
314,697 + DZA65_RS01430 0.53 -0.4
314,698 - DZA65_RS01430 0.53 +0.5

Or see this region's nucleotide sequence