Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01385 and DZA65_RS01390 are separated by 238 nucleotides DZA65_RS01390 and DZA65_RS01395 are separated by 68 nucleotides DZA65_RS01395 and DZA65_RS01400 are separated by 212 nucleotides
DZA65_RS01385: DZA65_RS01385 - type II 3-dehydroquinate dehydratase, at 304,589 to 305,041
_RS01385
DZA65_RS01390: DZA65_RS01390 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 305,280 to 305,879
_RS01390
DZA65_RS01395: DZA65_RS01395 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 305,948 to 306,949
_RS01395
DZA65_RS01400: DZA65_RS01400 - oxidoreductase, at 307,162 to 308,148
_RS01400
Position (kb) 305
306
307 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 305.084 kb on - strand at 305.125 kb on - strand at 305.154 kb on + strand at 305.154 kb on + strand at 305.154 kb on + strand at 305.154 kb on + strand at 305.155 kb on - strand at 305.155 kb on - strand at 305.155 kb on - strand at 305.156 kb on + strand at 305.156 kb on + strand at 305.156 kb on + strand at 305.157 kb on - strand at 305.157 kb on - strand at 305.157 kb on - strand at 305.157 kb on - strand at 305.185 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.206 kb on + strand at 305.272 kb on - strand at 305.275 kb on - strand at 305.387 kb on - strand, within DZA65_RS01390 at 305.416 kb on + strand, within DZA65_RS01390 at 305.416 kb on + strand, within DZA65_RS01390 at 305.416 kb on + strand, within DZA65_RS01390 at 305.417 kb on - strand, within DZA65_RS01390 at 305.417 kb on - strand, within DZA65_RS01390 at 305.417 kb on - strand, within DZA65_RS01390 at 305.417 kb on - strand, within DZA65_RS01390 at 305.417 kb on - strand, within DZA65_RS01390 at 305.426 kb on + strand, within DZA65_RS01390 at 305.426 kb on + strand, within DZA65_RS01390 at 305.426 kb on + strand, within DZA65_RS01390 at 305.500 kb on - strand, within DZA65_RS01390 at 305.530 kb on + strand, within DZA65_RS01390 at 305.530 kb on + strand, within DZA65_RS01390 at 305.530 kb on + strand, within DZA65_RS01390 at 305.531 kb on - strand, within DZA65_RS01390 at 305.596 kb on + strand, within DZA65_RS01390 at 305.596 kb on + strand, within DZA65_RS01390 at 305.597 kb on - strand, within DZA65_RS01390 at 305.597 kb on - strand, within DZA65_RS01390 at 305.597 kb on - strand, within DZA65_RS01390 at 305.597 kb on - strand, within DZA65_RS01390 at 305.675 kb on + strand, within DZA65_RS01390 at 305.675 kb on + strand, within DZA65_RS01390 at 305.703 kb on + strand, within DZA65_RS01390 at 305.703 kb on + strand, within DZA65_RS01390 at 305.754 kb on - strand, within DZA65_RS01390 at 305.927 kb on - strand at 305.933 kb on + strand at 305.933 kb on + strand at 305.933 kb on + strand at 305.934 kb on - strand at 305.963 kb on + strand at 305.963 kb on + strand at 305.964 kb on - strand at 305.964 kb on - strand at 305.980 kb on - strand at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.158 kb on - strand, within DZA65_RS01395 at 306.158 kb on - strand, within DZA65_RS01395 at 306.187 kb on + strand, within DZA65_RS01395 at 306.188 kb on - strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.203 kb on - strand, within DZA65_RS01395 at 306.203 kb on - strand, within DZA65_RS01395 at 306.203 kb on - strand, within DZA65_RS01395 at 306.203 kb on - strand, within DZA65_RS01395 at 306.211 kb on + strand, within DZA65_RS01395 at 306.212 kb on - strand, within DZA65_RS01395 at 306.212 kb on - strand, within DZA65_RS01395 at 306.212 kb on - strand, within DZA65_RS01395 at 306.219 kb on + strand, within DZA65_RS01395 at 306.279 kb on + strand, within DZA65_RS01395 at 306.279 kb on + strand, within DZA65_RS01395 at 306.279 kb on + strand, within DZA65_RS01395 at 306.279 kb on + strand, within DZA65_RS01395 at 306.279 kb on + strand, within DZA65_RS01395 at 306.280 kb on - strand, within DZA65_RS01395 at 306.280 kb on - strand, within DZA65_RS01395 at 306.280 kb on - strand, within DZA65_RS01395 at 306.281 kb on + strand, within DZA65_RS01395 at 306.281 kb on + strand, within DZA65_RS01395 at 306.281 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.330 kb on - strand, within DZA65_RS01395 at 306.330 kb on - strand, within DZA65_RS01395 at 306.342 kb on + strand, within DZA65_RS01395 at 306.343 kb on - strand, within DZA65_RS01395 at 306.348 kb on + strand, within DZA65_RS01395 at 306.427 kb on - strand, within DZA65_RS01395 at 306.427 kb on - strand, within DZA65_RS01395 at 306.427 kb on - strand, within DZA65_RS01395 at 306.427 kb on - strand, within DZA65_RS01395 at 306.427 kb on - strand, within DZA65_RS01395 at 306.459 kb on - strand, within DZA65_RS01395 at 306.529 kb on - strand, within DZA65_RS01395 at 306.529 kb on - strand, within DZA65_RS01395 at 306.582 kb on - strand, within DZA65_RS01395 at 306.631 kb on + strand, within DZA65_RS01395 at 306.631 kb on + strand, within DZA65_RS01395 at 306.681 kb on + strand, within DZA65_RS01395 at 306.682 kb on - strand, within DZA65_RS01395 at 306.694 kb on - strand, within DZA65_RS01395 at 306.914 kb on + strand at 306.915 kb on - strand at 306.970 kb on + strand at 306.970 kb on + strand at 306.971 kb on - strand at 306.971 kb on - strand at 306.998 kb on + strand at 306.998 kb on + strand at 306.998 kb on + strand at 306.998 kb on + strand at 306.999 kb on - strand at 306.999 kb on - strand at 306.999 kb on - strand at 306.999 kb on - strand at 306.999 kb on - strand at 306.999 kb on - strand at 306.999 kb on - strand at 306.999 kb on - strand at 307.014 kb on + strand at 307.035 kb on + strand at 307.035 kb on + strand at 307.035 kb on + strand at 307.035 kb on + strand at 307.035 kb on + strand at 307.035 kb on + strand at 307.035 kb on + strand at 307.036 kb on - strand at 307.036 kb on - strand at 307.036 kb on - strand at 307.047 kb on + strand at 307.047 kb on + strand at 307.047 kb on + strand at 307.047 kb on + strand at 307.048 kb on - strand at 307.048 kb on - strand at 307.106 kb on + strand at 307.106 kb on + strand at 307.110 kb on - strand at 307.115 kb on + strand at 307.115 kb on + strand at 307.116 kb on - strand at 307.192 kb on - strand at 307.192 kb on - strand at 307.274 kb on + strand, within DZA65_RS01400 at 307.275 kb on - strand, within DZA65_RS01400 at 307.275 kb on - strand, within DZA65_RS01400 at 307.366 kb on + strand, within DZA65_RS01400 at 307.366 kb on + strand, within DZA65_RS01400 at 307.366 kb on + strand, within DZA65_RS01400 at 307.366 kb on + strand, within DZA65_RS01400 at 307.366 kb on + strand, within DZA65_RS01400 at 307.366 kb on + strand, within DZA65_RS01400 at 307.367 kb on - strand, within DZA65_RS01400 at 307.367 kb on - strand, within DZA65_RS01400 at 307.367 kb on - strand, within DZA65_RS01400 at 307.367 kb on - strand, within DZA65_RS01400 at 307.367 kb on - strand, within DZA65_RS01400 at 307.367 kb on - strand, within DZA65_RS01400 at 307.367 kb on - strand, within DZA65_RS01400 at 307.380 kb on + strand, within DZA65_RS01400 at 307.381 kb on - strand, within DZA65_RS01400 at 307.381 kb on - strand, within DZA65_RS01400 at 307.448 kb on + strand, within DZA65_RS01400 at 307.483 kb on - strand, within DZA65_RS01400 at 307.592 kb on + strand, within DZA65_RS01400 at 307.592 kb on + strand, within DZA65_RS01400 at 307.593 kb on - strand, within DZA65_RS01400 at 307.593 kb on - strand, within DZA65_RS01400 at 307.745 kb on - strand, within DZA65_RS01400
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 305,084 - -0.5 305,125 - +0.6 305,154 + +0.2 305,154 + +0.4 305,154 + +1.2 305,154 + -0.2 305,155 - +0.6 305,155 - -0.3 305,155 - -0.1 305,156 + -0.8 305,156 + -2.1 305,156 + -0.3 305,157 - +0.9 305,157 - +0.5 305,157 - +0.3 305,157 - -0.8 305,185 + -0.9 305,194 + -0.1 305,194 + +0.5 305,206 + +0.2 305,272 - -1.6 305,275 - +0.2 305,387 - DZA65_RS01390 0.18 +0.0 305,416 + DZA65_RS01390 0.23 -1.4 305,416 + DZA65_RS01390 0.23 +0.4 305,416 + DZA65_RS01390 0.23 -0.5 305,417 - DZA65_RS01390 0.23 -1.4 305,417 - DZA65_RS01390 0.23 +1.2 305,417 - DZA65_RS01390 0.23 +1.2 305,417 - DZA65_RS01390 0.23 -2.0 305,417 - DZA65_RS01390 0.23 +1.2 305,426 + DZA65_RS01390 0.24 -0.9 305,426 + DZA65_RS01390 0.24 +0.4 305,426 + DZA65_RS01390 0.24 -2.1 305,500 - DZA65_RS01390 0.37 +0.2 305,530 + DZA65_RS01390 0.42 +0.8 305,530 + DZA65_RS01390 0.42 -0.6 305,530 + DZA65_RS01390 0.42 +0.7 305,531 - DZA65_RS01390 0.42 +2.0 305,596 + DZA65_RS01390 0.53 +2.2 305,596 + DZA65_RS01390 0.53 +1.0 305,597 - DZA65_RS01390 0.53 +1.2 305,597 - DZA65_RS01390 0.53 -1.6 305,597 - DZA65_RS01390 0.53 +1.2 305,597 - DZA65_RS01390 0.53 -0.2 305,675 + DZA65_RS01390 0.66 -0.6 305,675 + DZA65_RS01390 0.66 +0.1 305,703 + DZA65_RS01390 0.70 +0.6 305,703 + DZA65_RS01390 0.70 +0.7 305,754 - DZA65_RS01390 0.79 +1.0 305,927 - +0.2 305,933 + +0.9 305,933 + +1.4 305,933 + -0.6 305,934 - +0.4 305,963 + -2.1 305,963 + -1.6 305,964 - +0.7 305,964 - +1.8 305,980 - +1.5 306,146 + DZA65_RS01395 0.20 -1.6 306,146 + DZA65_RS01395 0.20 -3.3 306,146 + DZA65_RS01395 0.20 +0.7 306,146 + DZA65_RS01395 0.20 +1.2 306,146 + DZA65_RS01395 0.20 +1.2 306,146 + DZA65_RS01395 0.20 +0.4 306,146 + DZA65_RS01395 0.20 -2.4 306,146 + DZA65_RS01395 0.20 +0.5 306,146 + DZA65_RS01395 0.20 +0.5 306,146 + DZA65_RS01395 0.20 -0.4 306,146 + DZA65_RS01395 0.20 -0.6 306,147 - DZA65_RS01395 0.20 +0.4 306,147 - DZA65_RS01395 0.20 +0.7 306,147 - DZA65_RS01395 0.20 +0.2 306,147 - DZA65_RS01395 0.20 -0.8 306,147 - DZA65_RS01395 0.20 +2.3 306,147 - DZA65_RS01395 0.20 -0.3 306,158 - DZA65_RS01395 0.21 +0.9 306,158 - DZA65_RS01395 0.21 -0.8 306,187 + DZA65_RS01395 0.24 +0.1 306,188 - DZA65_RS01395 0.24 +0.9 306,202 + DZA65_RS01395 0.25 -0.0 306,202 + DZA65_RS01395 0.25 +0.2 306,202 + DZA65_RS01395 0.25 +2.3 306,202 + DZA65_RS01395 0.25 +1.2 306,202 + DZA65_RS01395 0.25 +1.2 306,202 + DZA65_RS01395 0.25 -0.9 306,202 + DZA65_RS01395 0.25 +0.3 306,203 - DZA65_RS01395 0.25 +1.7 306,203 - DZA65_RS01395 0.25 +0.5 306,203 - DZA65_RS01395 0.25 +0.3 306,203 - DZA65_RS01395 0.25 -0.9 306,211 + DZA65_RS01395 0.26 +1.2 306,212 - DZA65_RS01395 0.26 +0.9 306,212 - DZA65_RS01395 0.26 -1.1 306,212 - DZA65_RS01395 0.26 -0.2 306,219 + DZA65_RS01395 0.27 +1.7 306,279 + DZA65_RS01395 0.33 +0.4 306,279 + DZA65_RS01395 0.33 -0.1 306,279 + DZA65_RS01395 0.33 -0.4 306,279 + DZA65_RS01395 0.33 -1.1 306,279 + DZA65_RS01395 0.33 -1.6 306,280 - DZA65_RS01395 0.33 +0.6 306,280 - DZA65_RS01395 0.33 +1.2 306,280 - DZA65_RS01395 0.33 -0.7 306,281 + DZA65_RS01395 0.33 -0.6 306,281 + DZA65_RS01395 0.33 -0.8 306,281 + DZA65_RS01395 0.33 +0.0 306,329 + DZA65_RS01395 0.38 -1.3 306,329 + DZA65_RS01395 0.38 -1.4 306,329 + DZA65_RS01395 0.38 -1.1 306,329 + DZA65_RS01395 0.38 -0.8 306,329 + DZA65_RS01395 0.38 -0.7 306,329 + DZA65_RS01395 0.38 +0.6 306,330 - DZA65_RS01395 0.38 +1.4 306,330 - DZA65_RS01395 0.38 +1.3 306,342 + DZA65_RS01395 0.39 +0.0 306,343 - DZA65_RS01395 0.39 -0.9 306,348 + DZA65_RS01395 0.40 +2.1 306,427 - DZA65_RS01395 0.48 -0.5 306,427 - DZA65_RS01395 0.48 +0.6 306,427 - DZA65_RS01395 0.48 -0.8 306,427 - DZA65_RS01395 0.48 +0.9 306,427 - DZA65_RS01395 0.48 +0.2 306,459 - DZA65_RS01395 0.51 -0.9 306,529 - DZA65_RS01395 0.58 -0.1 306,529 - DZA65_RS01395 0.58 +0.7 306,582 - DZA65_RS01395 0.63 -0.5 306,631 + DZA65_RS01395 0.68 -0.6 306,631 + DZA65_RS01395 0.68 -0.4 306,681 + DZA65_RS01395 0.73 -0.8 306,682 - DZA65_RS01395 0.73 +0.6 306,694 - DZA65_RS01395 0.74 -0.8 306,914 + -0.4 306,915 - +1.2 306,970 + -1.4 306,970 + -0.8 306,971 - -0.3 306,971 - +1.0 306,998 + +0.1 306,998 + -1.1 306,998 + +0.3 306,998 + -1.4 306,999 - +1.1 306,999 - -0.6 306,999 - +0.8 306,999 - +0.5 306,999 - +0.0 306,999 - +0.3 306,999 - -1.8 306,999 - +0.6 307,014 + +0.2 307,035 + -0.3 307,035 + -0.5 307,035 + +0.1 307,035 + +0.0 307,035 + -0.3 307,035 + +1.2 307,035 + -1.6 307,036 - -0.2 307,036 - -0.3 307,036 - -0.6 307,047 + +1.2 307,047 + -1.8 307,047 + -1.0 307,047 + -1.6 307,048 - +0.9 307,048 - +0.9 307,106 + +0.3 307,106 + -1.0 307,110 - -1.4 307,115 + -0.4 307,115 + +1.0 307,116 - +0.2 307,192 - -0.1 307,192 - +1.4 307,274 + DZA65_RS01400 0.11 -2.0 307,275 - DZA65_RS01400 0.11 -0.1 307,275 - DZA65_RS01400 0.11 -0.7 307,366 + DZA65_RS01400 0.21 -0.3 307,366 + DZA65_RS01400 0.21 -0.6 307,366 + DZA65_RS01400 0.21 +0.1 307,366 + DZA65_RS01400 0.21 -0.6 307,366 + DZA65_RS01400 0.21 +1.2 307,366 + DZA65_RS01400 0.21 -2.4 307,367 - DZA65_RS01400 0.21 +0.2 307,367 - DZA65_RS01400 0.21 +0.1 307,367 - DZA65_RS01400 0.21 +0.7 307,367 - DZA65_RS01400 0.21 +1.2 307,367 - DZA65_RS01400 0.21 +0.2 307,367 - DZA65_RS01400 0.21 -0.7 307,367 - DZA65_RS01400 0.21 +2.3 307,380 + DZA65_RS01400 0.22 +0.3 307,381 - DZA65_RS01400 0.22 -0.5 307,381 - DZA65_RS01400 0.22 +0.6 307,448 + DZA65_RS01400 0.29 +0.0 307,483 - DZA65_RS01400 0.33 -0.3 307,592 + DZA65_RS01400 0.44 +0.0 307,592 + DZA65_RS01400 0.44 -0.0 307,593 - DZA65_RS01400 0.44 +0.2 307,593 - DZA65_RS01400 0.44 -0.1 307,745 - DZA65_RS01400 0.59 -1.0
Or see this region's nucleotide sequence