Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00570 and DZA65_RS00575 are separated by 344 nucleotides DZA65_RS00575 and DZA65_RS00580 are separated by 129 nucleotides
DZA65_RS00570: DZA65_RS00570 - IS3 family transposase, at 131,942 to 133,050
_RS00570
DZA65_RS00575: DZA65_RS00575 - YicC family protein, at 133,395 to 134,258
_RS00575
DZA65_RS00580: DZA65_RS00580 - LysR family transcriptional regulator, at 134,388 to 135,296
_RS00580
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 132.481 kb on + strand, within DZA65_RS00570 at 132.485 kb on + strand, within DZA65_RS00570 at 132.485 kb on + strand, within DZA65_RS00570 at 133.105 kb on + strand at 133.121 kb on + strand at 133.121 kb on + strand at 133.121 kb on + strand at 133.121 kb on + strand at 133.132 kb on + strand at 133.132 kb on + strand at 133.133 kb on - strand at 133.133 kb on - strand at 133.135 kb on + strand at 133.136 kb on - strand at 133.136 kb on - strand at 133.136 kb on - strand at 133.136 kb on - strand at 133.136 kb on - strand at 133.136 kb on - strand at 133.137 kb on + strand at 133.137 kb on + strand at 133.137 kb on + strand at 133.137 kb on + strand at 133.137 kb on + strand at 133.137 kb on + strand at 133.138 kb on - strand at 133.138 kb on - strand at 133.138 kb on - strand at 133.138 kb on - strand at 133.138 kb on - strand at 133.139 kb on + strand at 133.139 kb on + strand at 133.139 kb on + strand at 133.139 kb on + strand at 133.139 kb on + strand at 133.139 kb on + strand at 133.139 kb on + strand at 133.139 kb on + strand at 133.139 kb on + strand at 133.139 kb on + strand at 133.139 kb on + strand at 133.140 kb on - strand at 133.140 kb on - strand at 133.140 kb on - strand at 133.140 kb on - strand at 133.140 kb on - strand at 133.140 kb on - strand at 133.143 kb on + strand at 133.143 kb on + strand at 133.143 kb on + strand at 133.143 kb on + strand at 133.143 kb on + strand at 133.144 kb on - strand at 133.144 kb on - strand at 133.144 kb on - strand at 133.144 kb on - strand at 133.144 kb on - strand at 133.147 kb on + strand at 133.147 kb on + strand at 133.147 kb on + strand at 133.147 kb on + strand at 133.148 kb on - strand at 133.148 kb on - strand at 133.148 kb on - strand at 133.153 kb on + strand at 133.178 kb on - strand at 133.211 kb on + strand at 133.211 kb on + strand at 133.215 kb on + strand at 133.220 kb on + strand at 133.221 kb on - strand at 133.221 kb on - strand at 133.224 kb on + strand at 133.224 kb on + strand at 133.225 kb on - strand at 133.225 kb on - strand at 133.226 kb on + strand at 133.227 kb on - strand at 133.227 kb on - strand at 133.227 kb on - strand at 133.235 kb on + strand at 133.235 kb on + strand at 133.235 kb on + strand at 133.235 kb on + strand at 133.235 kb on + strand at 133.236 kb on - strand at 133.236 kb on - strand at 133.236 kb on - strand at 133.255 kb on - strand at 133.267 kb on + strand at 133.268 kb on - strand at 133.271 kb on + strand at 133.271 kb on + strand at 133.271 kb on + strand at 133.271 kb on + strand at 133.287 kb on + strand at 133.288 kb on - strand at 133.296 kb on + strand at 133.297 kb on - strand at 133.303 kb on - strand at 133.303 kb on - strand at 133.307 kb on + strand at 133.307 kb on + strand at 133.369 kb on - strand at 133.396 kb on + strand at 133.403 kb on + strand at 133.573 kb on + strand, within DZA65_RS00575 at 133.835 kb on + strand, within DZA65_RS00575 at 133.835 kb on + strand, within DZA65_RS00575 at 133.835 kb on + strand, within DZA65_RS00575 at 133.835 kb on + strand, within DZA65_RS00575 at 133.836 kb on - strand at 133.836 kb on - strand, within DZA65_RS00575 at 133.836 kb on - strand, within DZA65_RS00575 at 133.869 kb on + strand, within DZA65_RS00575 at 133.869 kb on + strand, within DZA65_RS00575 at 133.869 kb on + strand, within DZA65_RS00575 at 133.869 kb on + strand, within DZA65_RS00575 at 133.869 kb on + strand, within DZA65_RS00575 at 133.869 kb on + strand, within DZA65_RS00575 at 133.869 kb on + strand, within DZA65_RS00575 at 133.869 kb on + strand at 133.869 kb on + strand, within DZA65_RS00575 at 133.869 kb on + strand, within DZA65_RS00575 at 133.869 kb on + strand, within DZA65_RS00575 at 133.870 kb on - strand, within DZA65_RS00575 at 133.870 kb on - strand, within DZA65_RS00575 at 133.870 kb on - strand, within DZA65_RS00575 at 133.870 kb on - strand, within DZA65_RS00575 at 133.870 kb on - strand, within DZA65_RS00575 at 133.870 kb on - strand, within DZA65_RS00575 at 133.870 kb on - strand, within DZA65_RS00575 at 133.873 kb on + strand, within DZA65_RS00575 at 134.124 kb on + strand, within DZA65_RS00575 at 134.124 kb on + strand, within DZA65_RS00575 at 134.145 kb on + strand, within DZA65_RS00575 at 134.155 kb on + strand, within DZA65_RS00575 at 134.155 kb on + strand, within DZA65_RS00575 at 134.155 kb on + strand, within DZA65_RS00575 at 134.155 kb on + strand, within DZA65_RS00575 at 134.155 kb on + strand, within DZA65_RS00575 at 134.155 kb on + strand, within DZA65_RS00575 at 134.155 kb on + strand, within DZA65_RS00575 at 134.155 kb on + strand, within DZA65_RS00575 at 134.155 kb on + strand, within DZA65_RS00575 at 134.155 kb on + strand, within DZA65_RS00575 at 134.155 kb on + strand, within DZA65_RS00575 at 134.156 kb on - strand, within DZA65_RS00575 at 134.156 kb on - strand, within DZA65_RS00575 at 134.156 kb on - strand, within DZA65_RS00575 at 134.156 kb on - strand, within DZA65_RS00575 at 134.156 kb on - strand, within DZA65_RS00575 at 134.156 kb on - strand, within DZA65_RS00575 at 134.168 kb on - strand, within DZA65_RS00575 at 134.168 kb on - strand, within DZA65_RS00575 at 134.236 kb on + strand at 134.237 kb on - strand at 134.250 kb on - strand at 134.250 kb on - strand at 134.266 kb on + strand at 134.266 kb on + strand at 134.266 kb on + strand at 134.266 kb on + strand at 134.266 kb on + strand at 134.266 kb on + strand at 134.267 kb on - strand at 134.267 kb on - strand at 134.267 kb on - strand at 134.273 kb on + strand at 134.288 kb on + strand at 134.292 kb on + strand at 134.292 kb on + strand at 134.292 kb on + strand at 134.292 kb on + strand at 134.292 kb on + strand at 134.292 kb on + strand at 134.292 kb on + strand at 134.292 kb on + strand at 134.292 kb on + strand at 134.292 kb on + strand at 134.292 kb on + strand at 134.292 kb on + strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.293 kb on - strand at 134.294 kb on + strand at 134.295 kb on - strand at 134.499 kb on + strand, within DZA65_RS00580 at 134.499 kb on + strand, within DZA65_RS00580 at 134.500 kb on - strand, within DZA65_RS00580 at 134.500 kb on - strand, within DZA65_RS00580 at 134.500 kb on - strand, within DZA65_RS00580 at 134.633 kb on - strand, within DZA65_RS00580 at 134.644 kb on + strand, within DZA65_RS00580 at 134.644 kb on + strand, within DZA65_RS00580 at 134.644 kb on + strand, within DZA65_RS00580 at 134.644 kb on + strand, within DZA65_RS00580 at 134.645 kb on - strand, within DZA65_RS00580 at 134.645 kb on - strand, within DZA65_RS00580 at 134.645 kb on - strand, within DZA65_RS00580 at 134.739 kb on - strand, within DZA65_RS00580 at 134.739 kb on - strand, within DZA65_RS00580 at 134.804 kb on + strand, within DZA65_RS00580 at 134.804 kb on + strand, within DZA65_RS00580 at 134.804 kb on + strand, within DZA65_RS00580 at 134.805 kb on - strand, within DZA65_RS00580 at 134.805 kb on - strand, within DZA65_RS00580 at 134.805 kb on - strand, within DZA65_RS00580 at 134.805 kb on - strand, within DZA65_RS00580 at 134.805 kb on - strand, within DZA65_RS00580 at 134.859 kb on + strand, within DZA65_RS00580 at 134.860 kb on - strand, within DZA65_RS00580 at 134.891 kb on + strand, within DZA65_RS00580 at 134.892 kb on - strand, within DZA65_RS00580 at 135.065 kb on + strand, within DZA65_RS00580 at 135.065 kb on + strand, within DZA65_RS00580 at 135.065 kb on + strand, within DZA65_RS00580 at 135.066 kb on - strand, within DZA65_RS00580 at 135.066 kb on - strand, within DZA65_RS00580 at 135.066 kb on - strand, within DZA65_RS00580 at 135.072 kb on + strand, within DZA65_RS00580 at 135.072 kb on + strand, within DZA65_RS00580 at 135.072 kb on + strand, within DZA65_RS00580 at 135.072 kb on + strand, within DZA65_RS00580 at 135.072 kb on + strand, within DZA65_RS00580 at 135.073 kb on - strand, within DZA65_RS00580 at 135.073 kb on - strand, within DZA65_RS00580 at 135.073 kb on - strand, within DZA65_RS00580 at 135.073 kb on - strand, within DZA65_RS00580 at 135.073 kb on - strand, within DZA65_RS00580 at 135.073 kb on - strand, within DZA65_RS00580 at 135.082 kb on + strand, within DZA65_RS00580 at 135.083 kb on - strand, within DZA65_RS00580 at 135.083 kb on - strand, within DZA65_RS00580 at 135.083 kb on - strand, within DZA65_RS00580 at 135.083 kb on - strand, within DZA65_RS00580 at 135.225 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 132,481 + DZA65_RS00570 0.49 +0.9 132,485 + DZA65_RS00570 0.49 +1.1 132,485 + DZA65_RS00570 0.49 -2.4 133,105 + -2.1 133,121 + -0.9 133,121 + -1.6 133,121 + +0.2 133,121 + +2.2 133,132 + +0.5 133,132 + +0.2 133,133 - -0.4 133,133 - +0.2 133,135 + +0.5 133,136 - +1.3 133,136 - -0.2 133,136 - -0.4 133,136 - -1.2 133,136 - -1.8 133,136 - +2.0 133,137 + -0.4 133,137 + +0.6 133,137 + -0.6 133,137 + +1.2 133,137 + +1.2 133,137 + -0.2 133,138 - -0.3 133,138 - -0.4 133,138 - +1.1 133,138 - +0.6 133,138 - -3.1 133,139 + +1.4 133,139 + +2.9 133,139 + +0.9 133,139 + +0.2 133,139 + +1.2 133,139 + -0.5 133,139 + +1.0 133,139 + -0.1 133,139 + -1.7 133,139 + +0.1 133,139 + +1.0 133,140 - -1.0 133,140 - -0.6 133,140 - +0.0 133,140 - -0.4 133,140 - -0.4 133,140 - +0.7 133,143 + +0.6 133,143 + +0.8 133,143 + +0.4 133,143 + +1.2 133,143 + +1.2 133,144 - -0.8 133,144 - -1.3 133,144 - +0.6 133,144 - +0.2 133,144 - -0.8 133,147 + -1.8 133,147 + +1.2 133,147 + +1.2 133,147 + +0.6 133,148 - -1.4 133,148 - -0.1 133,148 - -0.6 133,153 + -0.4 133,178 - -0.7 133,211 + +0.7 133,211 + -1.4 133,215 + +0.6 133,220 + -0.1 133,221 - -0.1 133,221 - +0.2 133,224 + +1.2 133,224 + +0.6 133,225 - -2.4 133,225 - -0.7 133,226 + +0.1 133,227 - -1.1 133,227 - -1.7 133,227 - +1.2 133,235 + -0.7 133,235 + +1.1 133,235 + +1.2 133,235 + -0.6 133,235 + +1.2 133,236 - -0.4 133,236 - -0.8 133,236 - +1.2 133,255 - +0.9 133,267 + +1.4 133,268 - +1.2 133,271 + -0.1 133,271 + -0.8 133,271 + -0.1 133,271 + +0.2 133,287 + +0.2 133,288 - +0.0 133,296 + -0.1 133,297 - -1.1 133,303 - -1.9 133,303 - +0.2 133,307 + -1.1 133,307 + +1.2 133,369 - +0.7 133,396 + +0.2 133,403 + +1.2 133,573 + DZA65_RS00575 0.21 -0.8 133,835 + DZA65_RS00575 0.51 +2.0 133,835 + DZA65_RS00575 0.51 -1.6 133,835 + DZA65_RS00575 0.51 -0.4 133,835 + DZA65_RS00575 0.51 +2.0 133,836 - +0.9 133,836 - DZA65_RS00575 0.51 +0.2 133,836 - DZA65_RS00575 0.51 -0.4 133,869 + DZA65_RS00575 0.55 +0.2 133,869 + DZA65_RS00575 0.55 -2.8 133,869 + DZA65_RS00575 0.55 -2.5 133,869 + DZA65_RS00575 0.55 -1.6 133,869 + DZA65_RS00575 0.55 +0.6 133,869 + DZA65_RS00575 0.55 +1.2 133,869 + DZA65_RS00575 0.55 +0.9 133,869 + -1.1 133,869 + DZA65_RS00575 0.55 +1.2 133,869 + DZA65_RS00575 0.55 -1.1 133,869 + DZA65_RS00575 0.55 -0.5 133,870 - DZA65_RS00575 0.55 -0.9 133,870 - DZA65_RS00575 0.55 +1.2 133,870 - DZA65_RS00575 0.55 +1.2 133,870 - DZA65_RS00575 0.55 +0.4 133,870 - DZA65_RS00575 0.55 -1.1 133,870 - DZA65_RS00575 0.55 +2.2 133,870 - DZA65_RS00575 0.55 +0.9 133,873 + DZA65_RS00575 0.55 +0.1 134,124 + DZA65_RS00575 0.84 +1.0 134,124 + DZA65_RS00575 0.84 +0.9 134,145 + DZA65_RS00575 0.87 +0.8 134,155 + DZA65_RS00575 0.88 +0.4 134,155 + DZA65_RS00575 0.88 -0.0 134,155 + DZA65_RS00575 0.88 +2.6 134,155 + DZA65_RS00575 0.88 +0.6 134,155 + DZA65_RS00575 0.88 +1.2 134,155 + DZA65_RS00575 0.88 +0.6 134,155 + DZA65_RS00575 0.88 -0.8 134,155 + DZA65_RS00575 0.88 +0.1 134,155 + DZA65_RS00575 0.88 +0.2 134,155 + DZA65_RS00575 0.88 +0.4 134,155 + DZA65_RS00575 0.88 +0.4 134,156 - DZA65_RS00575 0.88 +1.8 134,156 - DZA65_RS00575 0.88 +1.0 134,156 - DZA65_RS00575 0.88 +1.2 134,156 - DZA65_RS00575 0.88 +1.2 134,156 - DZA65_RS00575 0.88 +0.2 134,156 - DZA65_RS00575 0.88 +1.2 134,168 - DZA65_RS00575 0.89 +1.2 134,168 - DZA65_RS00575 0.89 +2.2 134,236 + +1.1 134,237 - +0.9 134,250 - -0.4 134,250 - -0.1 134,266 + +0.7 134,266 + +1.2 134,266 + -0.8 134,266 + -1.4 134,266 + +0.2 134,266 + +1.9 134,267 - +0.2 134,267 - +2.0 134,267 - +1.2 134,273 + +1.2 134,288 + +0.8 134,292 + +0.2 134,292 + -1.8 134,292 + -0.6 134,292 + +0.4 134,292 + +0.5 134,292 + +0.3 134,292 + +0.8 134,292 + +0.6 134,292 + +2.8 134,292 + -1.1 134,292 + +1.8 134,292 + +0.8 134,293 - +1.0 134,293 - +1.2 134,293 - -0.1 134,293 - -0.1 134,293 - +1.2 134,293 - +1.2 134,293 - +0.2 134,293 - +0.6 134,293 - +1.9 134,293 - +1.2 134,293 - -0.7 134,293 - -0.4 134,293 - +0.8 134,293 - +1.2 134,293 - +0.7 134,293 - +0.7 134,293 - -1.1 134,293 - +1.0 134,294 + +1.6 134,295 - +2.4 134,499 + DZA65_RS00580 0.12 +0.3 134,499 + DZA65_RS00580 0.12 +0.2 134,500 - DZA65_RS00580 0.12 +0.1 134,500 - DZA65_RS00580 0.12 +0.2 134,500 - DZA65_RS00580 0.12 -1.7 134,633 - DZA65_RS00580 0.27 -0.6 134,644 + DZA65_RS00580 0.28 -1.2 134,644 + DZA65_RS00580 0.28 +2.4 134,644 + DZA65_RS00580 0.28 -1.6 134,644 + DZA65_RS00580 0.28 +0.1 134,645 - DZA65_RS00580 0.28 +0.7 134,645 - DZA65_RS00580 0.28 -1.1 134,645 - DZA65_RS00580 0.28 -1.6 134,739 - DZA65_RS00580 0.39 -0.8 134,739 - DZA65_RS00580 0.39 -0.0 134,804 + DZA65_RS00580 0.46 -2.2 134,804 + DZA65_RS00580 0.46 -0.4 134,804 + DZA65_RS00580 0.46 +0.1 134,805 - DZA65_RS00580 0.46 +0.5 134,805 - DZA65_RS00580 0.46 -1.1 134,805 - DZA65_RS00580 0.46 -0.4 134,805 - DZA65_RS00580 0.46 -0.4 134,805 - DZA65_RS00580 0.46 +0.2 134,859 + DZA65_RS00580 0.52 +0.2 134,860 - DZA65_RS00580 0.52 +0.2 134,891 + DZA65_RS00580 0.55 +0.1 134,892 - DZA65_RS00580 0.55 +0.5 135,065 + DZA65_RS00580 0.74 +1.4 135,065 + DZA65_RS00580 0.74 -0.8 135,065 + DZA65_RS00580 0.74 +1.2 135,066 - DZA65_RS00580 0.75 +0.4 135,066 - DZA65_RS00580 0.75 -0.0 135,066 - DZA65_RS00580 0.75 +1.9 135,072 + DZA65_RS00580 0.75 +1.2 135,072 + DZA65_RS00580 0.75 -0.1 135,072 + DZA65_RS00580 0.75 +1.2 135,072 + DZA65_RS00580 0.75 +0.0 135,072 + DZA65_RS00580 0.75 -0.8 135,073 - DZA65_RS00580 0.75 -1.2 135,073 - DZA65_RS00580 0.75 +1.2 135,073 - DZA65_RS00580 0.75 -1.6 135,073 - DZA65_RS00580 0.75 +0.4 135,073 - DZA65_RS00580 0.75 +0.2 135,073 - DZA65_RS00580 0.75 -1.2 135,082 + DZA65_RS00580 0.76 -0.1 135,083 - DZA65_RS00580 0.76 +1.2 135,083 - DZA65_RS00580 0.76 +0.2 135,083 - DZA65_RS00580 0.76 -0.8 135,083 - DZA65_RS00580 0.76 +0.6 135,225 + -0.4
Or see this region's nucleotide sequence