Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00265 and DZA65_RS00270 are separated by 75 nucleotides DZA65_RS00270 and DZA65_RS00275 are separated by 166 nucleotides DZA65_RS00275 and DZA65_RS00280 are separated by 105 nucleotides
DZA65_RS00265: DZA65_RS00265 - PTS mannitol transporter subunit IICBA, at 63,353 to 65,260
_RS00265
DZA65_RS00270: DZA65_RS00270 - mannitol-1-phosphate 5-dehydrogenase, at 65,336 to 66,484
_RS00270
DZA65_RS00275: DZA65_RS00275 - MltR family transcriptional regulator, at 66,651 to 67,181
_RS00275
DZA65_RS00280: DZA65_RS00280 - HAMP domain-containing protein, at 67,287 to 69,173
_RS00280
Position (kb) 65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 64.408 kb on + strand, within DZA65_RS00265 at 64.409 kb on - strand, within DZA65_RS00265 at 64.409 kb on - strand, within DZA65_RS00265 at 64.480 kb on + strand, within DZA65_RS00265 at 64.522 kb on + strand, within DZA65_RS00265 at 64.523 kb on - strand, within DZA65_RS00265 at 64.551 kb on + strand at 64.551 kb on + strand, within DZA65_RS00265 at 64.718 kb on + strand, within DZA65_RS00265 at 64.718 kb on + strand, within DZA65_RS00265 at 64.718 kb on + strand, within DZA65_RS00265 at 64.718 kb on + strand, within DZA65_RS00265 at 64.718 kb on + strand, within DZA65_RS00265 at 64.718 kb on + strand, within DZA65_RS00265 at 64.718 kb on + strand, within DZA65_RS00265 at 64.718 kb on + strand, within DZA65_RS00265 at 64.718 kb on + strand, within DZA65_RS00265 at 64.718 kb on + strand, within DZA65_RS00265 at 64.718 kb on + strand, within DZA65_RS00265 at 64.719 kb on - strand, within DZA65_RS00265 at 64.719 kb on - strand, within DZA65_RS00265 at 64.719 kb on - strand, within DZA65_RS00265 at 64.719 kb on - strand, within DZA65_RS00265 at 64.719 kb on - strand, within DZA65_RS00265 at 64.719 kb on - strand, within DZA65_RS00265 at 64.719 kb on - strand, within DZA65_RS00265 at 64.905 kb on + strand, within DZA65_RS00265 at 64.905 kb on + strand, within DZA65_RS00265 at 64.906 kb on - strand, within DZA65_RS00265 at 64.916 kb on + strand, within DZA65_RS00265 at 64.917 kb on - strand, within DZA65_RS00265 at 64.917 kb on - strand, within DZA65_RS00265 at 64.917 kb on - strand, within DZA65_RS00265 at 64.917 kb on - strand, within DZA65_RS00265 at 64.931 kb on + strand, within DZA65_RS00265 at 64.931 kb on + strand, within DZA65_RS00265 at 64.932 kb on - strand, within DZA65_RS00265 at 64.932 kb on - strand, within DZA65_RS00265 at 64.932 kb on - strand, within DZA65_RS00265 at 64.973 kb on + strand, within DZA65_RS00265 at 64.973 kb on + strand, within DZA65_RS00265 at 64.973 kb on + strand, within DZA65_RS00265 at 64.973 kb on + strand, within DZA65_RS00265 at 64.973 kb on + strand, within DZA65_RS00265 at 64.974 kb on - strand, within DZA65_RS00265 at 64.974 kb on - strand, within DZA65_RS00265 at 64.974 kb on - strand, within DZA65_RS00265 at 64.974 kb on - strand, within DZA65_RS00265 at 64.974 kb on - strand, within DZA65_RS00265 at 64.974 kb on - strand, within DZA65_RS00265 at 64.977 kb on + strand, within DZA65_RS00265 at 64.977 kb on + strand, within DZA65_RS00265 at 64.977 kb on + strand, within DZA65_RS00265 at 64.978 kb on - strand, within DZA65_RS00265 at 64.978 kb on - strand, within DZA65_RS00265 at 65.161 kb on + strand at 65.161 kb on + strand at 65.190 kb on + strand at 65.190 kb on + strand at 65.190 kb on + strand at 65.190 kb on + strand at 65.190 kb on + strand at 65.190 kb on + strand at 65.190 kb on + strand at 65.190 kb on + strand at 65.191 kb on - strand at 65.191 kb on - strand at 65.191 kb on - strand at 65.191 kb on - strand at 65.266 kb on - strand at 65.266 kb on - strand at 65.309 kb on + strand at 65.309 kb on + strand at 65.309 kb on + strand at 65.309 kb on + strand at 65.310 kb on - strand at 65.310 kb on - strand at 65.319 kb on + strand at 65.320 kb on - strand at 65.320 kb on - strand at 65.320 kb on - strand at 65.320 kb on - strand at 65.320 kb on - strand at 65.322 kb on + strand at 65.322 kb on + strand at 65.322 kb on + strand at 65.322 kb on + strand at 65.322 kb on + strand at 65.322 kb on + strand at 65.322 kb on + strand at 65.323 kb on - strand at 65.323 kb on - strand at 65.323 kb on - strand at 65.323 kb on - strand at 65.346 kb on + strand at 65.347 kb on - strand at 65.467 kb on + strand, within DZA65_RS00270 at 65.467 kb on + strand, within DZA65_RS00270 at 65.467 kb on + strand, within DZA65_RS00270 at 65.467 kb on + strand, within DZA65_RS00270 at 65.471 kb on + strand, within DZA65_RS00270 at 65.471 kb on + strand, within DZA65_RS00270 at 65.532 kb on + strand, within DZA65_RS00270 at 65.683 kb on + strand, within DZA65_RS00270 at 65.683 kb on + strand, within DZA65_RS00270 at 65.683 kb on + strand, within DZA65_RS00270 at 65.812 kb on + strand, within DZA65_RS00270 at 65.812 kb on + strand, within DZA65_RS00270 at 66.008 kb on + strand at 66.122 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.152 kb on + strand, within DZA65_RS00270 at 66.153 kb on - strand, within DZA65_RS00270 at 66.153 kb on - strand at 66.153 kb on - strand, within DZA65_RS00270 at 66.154 kb on + strand, within DZA65_RS00270 at 66.154 kb on + strand, within DZA65_RS00270 at 66.154 kb on + strand, within DZA65_RS00270 at 66.154 kb on + strand, within DZA65_RS00270 at 66.233 kb on - strand, within DZA65_RS00270 at 66.274 kb on + strand, within DZA65_RS00270 at 66.274 kb on + strand, within DZA65_RS00270 at 66.467 kb on + strand at 66.467 kb on + strand at 66.467 kb on + strand at 66.467 kb on + strand at 66.467 kb on + strand at 66.467 kb on + strand at 66.468 kb on - strand at 66.468 kb on - strand at 66.469 kb on + strand at 66.483 kb on - strand at 66.632 kb on + strand at 66.632 kb on + strand at 66.632 kb on + strand at 66.637 kb on + strand at 66.637 kb on + strand at 66.638 kb on - strand at 66.638 kb on - strand at 66.638 kb on - strand at 66.638 kb on - strand at 66.722 kb on + strand, within DZA65_RS00275 at 66.722 kb on + strand, within DZA65_RS00275 at 66.723 kb on - strand, within DZA65_RS00275 at 66.723 kb on - strand, within DZA65_RS00275 at 66.742 kb on + strand, within DZA65_RS00275 at 66.742 kb on + strand, within DZA65_RS00275 at 66.742 kb on + strand, within DZA65_RS00275 at 66.743 kb on - strand, within DZA65_RS00275 at 66.743 kb on - strand, within DZA65_RS00275 at 66.795 kb on + strand, within DZA65_RS00275 at 66.795 kb on + strand, within DZA65_RS00275 at 66.795 kb on + strand, within DZA65_RS00275 at 66.795 kb on + strand, within DZA65_RS00275 at 66.796 kb on - strand, within DZA65_RS00275 at 66.796 kb on - strand, within DZA65_RS00275 at 66.807 kb on + strand, within DZA65_RS00275 at 66.807 kb on + strand, within DZA65_RS00275 at 66.808 kb on - strand, within DZA65_RS00275 at 66.808 kb on - strand, within DZA65_RS00275 at 66.808 kb on - strand, within DZA65_RS00275 at 66.827 kb on - strand, within DZA65_RS00275 at 66.876 kb on + strand, within DZA65_RS00275 at 66.877 kb on - strand, within DZA65_RS00275 at 66.877 kb on - strand, within DZA65_RS00275 at 66.877 kb on - strand, within DZA65_RS00275 at 66.906 kb on + strand, within DZA65_RS00275 at 66.907 kb on - strand, within DZA65_RS00275 at 66.907 kb on - strand, within DZA65_RS00275 at 67.288 kb on + strand at 67.289 kb on - strand at 67.295 kb on + strand at 67.295 kb on + strand at 67.295 kb on + strand at 67.295 kb on + strand at 67.296 kb on - strand at 67.296 kb on - strand at 67.296 kb on - strand at 67.297 kb on + strand at 67.297 kb on + strand at 67.297 kb on + strand at 67.297 kb on + strand at 67.297 kb on + strand at 67.297 kb on + strand at 67.297 kb on + strand at 67.297 kb on + strand at 67.297 kb on + strand at 67.298 kb on - strand at 67.298 kb on - strand at 67.298 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 64,408 + DZA65_RS00265 0.55 -2.2 64,409 - DZA65_RS00265 0.55 +0.8 64,409 - DZA65_RS00265 0.55 -0.1 64,480 + DZA65_RS00265 0.59 +1.2 64,522 + DZA65_RS00265 0.61 -1.1 64,523 - DZA65_RS00265 0.61 +1.2 64,551 + +1.5 64,551 + DZA65_RS00265 0.63 -0.8 64,718 + DZA65_RS00265 0.72 +1.2 64,718 + DZA65_RS00265 0.72 +0.8 64,718 + DZA65_RS00265 0.72 -0.4 64,718 + DZA65_RS00265 0.72 -1.2 64,718 + DZA65_RS00265 0.72 -0.3 64,718 + DZA65_RS00265 0.72 +0.2 64,718 + DZA65_RS00265 0.72 -0.8 64,718 + DZA65_RS00265 0.72 -0.8 64,718 + DZA65_RS00265 0.72 +0.8 64,718 + DZA65_RS00265 0.72 +1.2 64,718 + DZA65_RS00265 0.72 -0.9 64,719 - DZA65_RS00265 0.72 +0.6 64,719 - DZA65_RS00265 0.72 +0.0 64,719 - DZA65_RS00265 0.72 -0.8 64,719 - DZA65_RS00265 0.72 -0.5 64,719 - DZA65_RS00265 0.72 -0.4 64,719 - DZA65_RS00265 0.72 -0.5 64,719 - DZA65_RS00265 0.72 -1.4 64,905 + DZA65_RS00265 0.81 +0.2 64,905 + DZA65_RS00265 0.81 -0.8 64,906 - DZA65_RS00265 0.81 -1.0 64,916 + DZA65_RS00265 0.82 -0.1 64,917 - DZA65_RS00265 0.82 -0.4 64,917 - DZA65_RS00265 0.82 +0.6 64,917 - DZA65_RS00265 0.82 -1.6 64,917 - DZA65_RS00265 0.82 -1.4 64,931 + DZA65_RS00265 0.83 +0.3 64,931 + DZA65_RS00265 0.83 +0.9 64,932 - DZA65_RS00265 0.83 -1.0 64,932 - DZA65_RS00265 0.83 +1.5 64,932 - DZA65_RS00265 0.83 -0.4 64,973 + DZA65_RS00265 0.85 -1.8 64,973 + DZA65_RS00265 0.85 -0.6 64,973 + DZA65_RS00265 0.85 +2.2 64,973 + DZA65_RS00265 0.85 +1.3 64,973 + DZA65_RS00265 0.85 -0.8 64,974 - DZA65_RS00265 0.85 +0.7 64,974 - DZA65_RS00265 0.85 +0.5 64,974 - DZA65_RS00265 0.85 +0.2 64,974 - DZA65_RS00265 0.85 +1.8 64,974 - DZA65_RS00265 0.85 +0.1 64,974 - DZA65_RS00265 0.85 -0.5 64,977 + DZA65_RS00265 0.85 +1.2 64,977 + DZA65_RS00265 0.85 +0.7 64,977 + DZA65_RS00265 0.85 +0.6 64,978 - DZA65_RS00265 0.85 -0.2 64,978 - DZA65_RS00265 0.85 -0.1 65,161 + +1.5 65,161 + -0.7 65,190 + -1.6 65,190 + +0.7 65,190 + -1.8 65,190 + -0.8 65,190 + -0.4 65,190 + +0.7 65,190 + +1.2 65,190 + -0.5 65,191 - +0.6 65,191 - -1.4 65,191 - +1.2 65,191 - +0.1 65,266 - -0.6 65,266 - -1.1 65,309 + +0.2 65,309 + +0.8 65,309 + +0.7 65,309 + -0.4 65,310 - -2.5 65,310 - +1.4 65,319 + +1.0 65,320 - -0.8 65,320 - -1.2 65,320 - -0.6 65,320 - +0.6 65,320 - -0.2 65,322 + +2.5 65,322 + +1.2 65,322 + -0.9 65,322 + -0.4 65,322 + +1.9 65,322 + -0.9 65,322 + +0.2 65,323 - -3.3 65,323 - -0.9 65,323 - +0.8 65,323 - -0.7 65,346 + +0.8 65,347 - -1.4 65,467 + DZA65_RS00270 0.11 -0.8 65,467 + DZA65_RS00270 0.11 +1.2 65,467 + DZA65_RS00270 0.11 +1.4 65,467 + DZA65_RS00270 0.11 +1.2 65,471 + DZA65_RS00270 0.12 -1.1 65,471 + DZA65_RS00270 0.12 -1.5 65,532 + DZA65_RS00270 0.17 -1.1 65,683 + DZA65_RS00270 0.30 +0.0 65,683 + DZA65_RS00270 0.30 +0.6 65,683 + DZA65_RS00270 0.30 +0.6 65,812 + DZA65_RS00270 0.41 +2.2 65,812 + DZA65_RS00270 0.41 +1.2 66,008 + -1.6 66,122 + DZA65_RS00270 0.68 +0.6 66,152 + DZA65_RS00270 0.71 +0.4 66,152 + DZA65_RS00270 0.71 +0.6 66,152 + DZA65_RS00270 0.71 -1.1 66,152 + DZA65_RS00270 0.71 +1.1 66,152 + DZA65_RS00270 0.71 +0.2 66,152 + DZA65_RS00270 0.71 -0.2 66,152 + DZA65_RS00270 0.71 +0.2 66,152 + DZA65_RS00270 0.71 -2.1 66,152 + DZA65_RS00270 0.71 -1.8 66,152 + DZA65_RS00270 0.71 -0.1 66,152 + DZA65_RS00270 0.71 -2.4 66,152 + DZA65_RS00270 0.71 -2.4 66,152 + DZA65_RS00270 0.71 +1.2 66,152 + DZA65_RS00270 0.71 +0.6 66,153 - DZA65_RS00270 0.71 +1.2 66,153 - +1.4 66,153 - DZA65_RS00270 0.71 -1.5 66,154 + DZA65_RS00270 0.71 +0.1 66,154 + DZA65_RS00270 0.71 -1.9 66,154 + DZA65_RS00270 0.71 -1.0 66,154 + DZA65_RS00270 0.71 -1.6 66,233 - DZA65_RS00270 0.78 -0.9 66,274 + DZA65_RS00270 0.82 -0.1 66,274 + DZA65_RS00270 0.82 -0.8 66,467 + +0.0 66,467 + +0.2 66,467 + -1.8 66,467 + -0.6 66,467 + -0.4 66,467 + -1.2 66,468 - +0.6 66,468 - -0.8 66,469 + -1.0 66,483 - -1.1 66,632 + -2.1 66,632 + -0.8 66,632 + +0.2 66,637 + -0.8 66,637 + +1.4 66,638 - -0.2 66,638 - -0.7 66,638 - -0.2 66,638 - -1.8 66,722 + DZA65_RS00275 0.13 -0.8 66,722 + DZA65_RS00275 0.13 +0.9 66,723 - DZA65_RS00275 0.14 -3.0 66,723 - DZA65_RS00275 0.14 -0.9 66,742 + DZA65_RS00275 0.17 +0.2 66,742 + DZA65_RS00275 0.17 -1.1 66,742 + DZA65_RS00275 0.17 +0.0 66,743 - DZA65_RS00275 0.17 -0.5 66,743 - DZA65_RS00275 0.17 +0.6 66,795 + DZA65_RS00275 0.27 -0.2 66,795 + DZA65_RS00275 0.27 -1.8 66,795 + DZA65_RS00275 0.27 +0.5 66,795 + DZA65_RS00275 0.27 -1.6 66,796 - DZA65_RS00275 0.27 -0.6 66,796 - DZA65_RS00275 0.27 +0.5 66,807 + DZA65_RS00275 0.29 +0.2 66,807 + DZA65_RS00275 0.29 -0.9 66,808 - DZA65_RS00275 0.30 -0.4 66,808 - DZA65_RS00275 0.30 +0.6 66,808 - DZA65_RS00275 0.30 -0.2 66,827 - DZA65_RS00275 0.33 -0.7 66,876 + DZA65_RS00275 0.42 -0.7 66,877 - DZA65_RS00275 0.43 +0.8 66,877 - DZA65_RS00275 0.43 -0.2 66,877 - DZA65_RS00275 0.43 -0.7 66,906 + DZA65_RS00275 0.48 -1.5 66,907 - DZA65_RS00275 0.48 -1.1 66,907 - DZA65_RS00275 0.48 +0.9 67,288 + +1.5 67,289 - +1.2 67,295 + +0.2 67,295 + +1.5 67,295 + +0.2 67,295 + -0.4 67,296 - +0.4 67,296 - +0.5 67,296 - -0.9 67,297 + +0.8 67,297 + +0.6 67,297 + -0.7 67,297 + -0.1 67,297 + -0.1 67,297 + +0.6 67,297 + -0.6 67,297 + -1.6 67,297 + +1.2 67,298 - -0.1 67,298 - +1.0 67,298 - +0.2
Or see this region's nucleotide sequence