Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21135

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,567,921	+		DZA65_RS21130	0.14	-0.5
4,567,921	+		DZA65_RS21130	0.14	-1.1
4,567,921	+		DZA65_RS21130	0.14	+0.7
4,567,922	-		DZA65_RS21130	0.14	+1.2
4,567,922	-		DZA65_RS21130	0.14	-0.9
4,567,924	+		DZA65_RS21130	0.15	-0.9
4,567,924	+		DZA65_RS21130	0.15	-0.1
4,567,924	+		DZA65_RS21130	0.15	-3.1
4,567,924	+		DZA65_RS21130	0.15	-1.2
4,567,925	-		DZA65_RS21130	0.15	-0.9
4,567,925	-		DZA65_RS21130	0.15	-1.9
4,567,925	-		DZA65_RS21130	0.15	-0.0
4,567,927	+		DZA65_RS21130	0.15	+0.1
4,567,927	+		DZA65_RS21130	0.15	-0.1
4,567,927	+		DZA65_RS21130	0.15	+1.1
4,567,928	-		DZA65_RS21130	0.15	+1.6
4,568,149	-		DZA65_RS21130	0.35	+0.9
4,568,149	-		DZA65_RS21130	0.35	-1.5
4,568,370	+		DZA65_RS21130	0.54	+1.6
4,568,370	+		DZA65_RS21130	0.54	-2.8
4,568,396	+		DZA65_RS21130	0.56	-1.9
4,568,590	+		DZA65_RS21130	0.74	+0.1
4,568,590	+		DZA65_RS21130	0.74	-0.5
4,568,590	+		DZA65_RS21130	0.74	-1.1
4,568,590	+		DZA65_RS21130	0.74	+0.3
4,568,590	+		DZA65_RS21130	0.74	-0.7
4,568,590	+		DZA65_RS21130	0.74	-1.6
4,568,590	+		DZA65_RS21130	0.74	-0.1
4,568,590	+		DZA65_RS21130	0.74	-0.8
4,568,590	+		DZA65_RS21130	0.74	-1.0
4,568,591	-		DZA65_RS21130	0.74	-1.7
4,568,591	-		DZA65_RS21130	0.74	-1.1
4,568,591	-		DZA65_RS21130	0.74	+0.9
4,568,591	-		DZA65_RS21130	0.74	-1.0
4,568,591	-		DZA65_RS21130	0.74	-0.9
4,568,591	-		DZA65_RS21130	0.74	-0.7
4,568,591	-		DZA65_RS21130	0.74	-1.9
4,568,591	-		DZA65_RS21130	0.74	-0.4
4,568,697	-		DZA65_RS21130	0.83	+2.1
4,568,786	+				-1.3
4,568,786	+				-0.8
4,568,787	-				-0.1
4,568,787	-				-0.1
4,568,899	+				-0.9
4,568,899	+				-1.3
4,568,899	+				+0.0
4,568,899	+				-1.7
4,568,899	+				+0.9
4,568,900	-				+1.5
4,568,900	-				-1.6
4,568,900	-				-0.7
4,568,967	+				+0.5
4,568,967	+				-0.1
4,568,967	+				+0.9
4,568,968	-				-0.5
4,568,968	-				-1.5
4,568,991	+				+0.9
4,568,991	+				-1.6
4,568,991	+				-2.1
4,568,991	+				+0.9
4,568,991	+				-0.7
4,568,992	-				+1.4
4,569,126	-		DZA65_RS21135	0.20	-0.3
4,569,186	+		DZA65_RS21135	0.25	+0.5
4,569,187	-		DZA65_RS21135	0.25	-0.7
4,569,187	-		DZA65_RS21135	0.25	-0.4
4,569,187	-		DZA65_RS21135	0.25	-2.1
4,569,249	+		DZA65_RS21135	0.30	+0.9
4,569,249	+		DZA65_RS21135	0.30	+0.3
4,569,249	+		DZA65_RS21135	0.30	-0.4
4,569,249	+		DZA65_RS21135	0.30	-0.7
4,569,250	-		DZA65_RS21135	0.30	-0.2
4,569,250	-		DZA65_RS21135	0.30	-0.9
4,569,250	-		DZA65_RS21135	0.30	+0.4
4,569,250	-		DZA65_RS21135	0.30	+0.6
4,569,306	+		DZA65_RS21135	0.35	+0.7
4,569,306	+		DZA65_RS21135	0.35	-0.7
4,569,416	-				-0.5
4,569,495	+		DZA65_RS21135	0.51	+0.4
4,569,495	+		DZA65_RS21135	0.51	-1.1
4,569,496	-		DZA65_RS21135	0.51	+0.7
4,569,512	+		DZA65_RS21135	0.52	+0.6
4,569,530	+		DZA65_RS21135	0.54	-0.7
4,569,530	+		DZA65_RS21135	0.54	-0.7
4,569,530	+		DZA65_RS21135	0.54	+0.1
4,569,530	+		DZA65_RS21135	0.54	-2.6
4,569,530	+		DZA65_RS21135	0.54	+1.4
4,569,530	+		DZA65_RS21135	0.54	-1.5
4,569,531	-		DZA65_RS21135	0.54	-2.9
4,569,531	-		DZA65_RS21135	0.54	-1.1
4,569,555	+		DZA65_RS21135	0.56	-0.7
4,569,555	+		DZA65_RS21135	0.56	+0.7
4,569,555	+		DZA65_RS21135	0.56	-1.3
4,569,585	-		DZA65_RS21135	0.58	-1.7
4,569,659	+		DZA65_RS21135	0.64	-0.1
4,569,659	+		DZA65_RS21135	0.64	-0.9
4,569,660	-		DZA65_RS21135	0.64	+0.9
4,569,660	-		DZA65_RS21135	0.64	+1.0
4,569,660	-		DZA65_RS21135	0.64	-0.5
4,569,660	-		DZA65_RS21135	0.64	-0.9
4,569,748	+		DZA65_RS21135	0.72	+0.0
4,569,748	+		DZA65_RS21135	0.72	-1.7
4,569,748	+		DZA65_RS21135	0.72	-0.1
4,569,748	+		DZA65_RS21135	0.72	-0.0
4,569,749	-		DZA65_RS21135	0.72	+0.9
4,569,784	+				-1.1
4,569,785	-		DZA65_RS21135	0.75	-0.6
4,569,884	+		DZA65_RS21135	0.83	-1.1
4,569,885	-		DZA65_RS21135	0.83	-1.5
4,569,885	-		DZA65_RS21135	0.83	-2.3
4,569,885	-		DZA65_RS21135	0.83	-0.9
4,569,885	-		DZA65_RS21135	0.83	+3.2
4,569,885	-		DZA65_RS21135	0.83	-0.9
4,569,973	-				-0.1
4,569,973	-				-1.2
4,569,973	-				-0.7
4,569,978	+				+0.4
4,569,978	+				-1.5
4,569,979	-				-0.3
4,569,979	-				+1.1
4,570,054	+				+0.1
4,570,146	+				+0.9
4,570,193	+				+1.2
4,570,193	+				+1.6
4,570,194	-				-0.4
4,570,194	-				+1.7
4,570,194	-				-0.1
4,570,194	-				+0.1
4,570,198	+				+0.4
4,570,198	+				-0.2
4,570,199	-				+0.3
4,570,199	-				-1.5
4,570,224	+				+0.6
4,570,244	+				+0.9
4,570,244	+				+0.1
4,570,244	+				+0.5
4,570,244	+				+0.1
4,570,245	-				-0.1
4,570,245	-				-1.1
4,570,245	-				+1.0
4,570,245	-				+1.2
4,570,245	-				-2.0
4,570,245	-				-1.1
4,570,298	+				+0.6
4,570,298	+				-1.2
4,570,298	+				-0.3
4,570,298	+				-0.9
4,570,299	-				-1.0
4,570,299	-				-0.3
4,570,299	-				+1.4
4,570,299	-				-1.4
4,570,299	-				-0.9
4,570,325	+				-0.3
4,570,326	-				+0.5
4,570,326	-				+0.9
4,570,326	-				-0.7
4,570,344	+				-0.5
4,570,344	+				-1.5
4,570,344	+				-2.1
4,570,344	+				+1.2
4,570,344	+				-0.1
4,570,344	+				+0.0
4,570,344	+				-2.5
4,570,344	+				+0.9
4,570,345	-				+0.1
4,570,345	-				+1.1
4,570,345	-				+0.3
4,570,345	-				+0.2
4,570,345	-				-1.1
4,570,345	-				-0.6
4,570,345	-				-2.6
4,570,345	-				-0.5
4,570,345	-				+0.3
4,570,345	-				+0.1
4,570,345	-				+0.9
4,570,345	-				-1.1
4,570,345	-				-0.1
4,570,364	+				-0.2
4,570,365	-				-0.1
4,570,365	-				+0.3
4,570,365	-				+0.7
4,570,464	-				-0.5
4,570,630	+				+0.4
4,570,630	+				-1.1
4,570,630	+				-1.6
4,570,630	+				+2.1
4,570,631	-				+3.4
4,570,631	-				-0.3
4,570,631	-				-0.3
4,570,637	+				-0.3
4,570,637	+				+0.4
4,570,637	+				+1.3
4,570,637	+				-3.0
4,570,638	-				+0.4
4,570,668	+				+0.6
4,570,668	+				+0.3
4,570,668	+				-1.6
4,570,669	-				+0.1
4,570,669	-				-1.5
4,570,669	-				+0.1
4,570,754	+				+0.1
4,570,754	+				-1.6
4,570,754	+				+0.1
4,570,754	+				+0.9
4,570,754	+				-0.9
4,570,755	-				+0.9
4,570,760	+				+0.3
4,570,760	+				+0.9
4,570,761	-				-1.7
4,570,761	-				-0.5
4,570,761	-				+0.1
4,570,821	-				+0.0
4,570,845	+		DZA65_RS21140	0.12	+0.1
4,570,846	-		DZA65_RS21140	0.12	-1.5
4,570,846	-		DZA65_RS21140	0.12	-0.4
4,570,846	-		DZA65_RS21140	0.12	+0.3
4,570,872	-				+0.1
4,571,004	+		DZA65_RS21140	0.25	+0.9
4,571,004	+		DZA65_RS21140	0.25	-0.0
4,571,005	-		DZA65_RS21140	0.26	-0.4