Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20055

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Stem-Atlantic
				remove
4,345,400	-	DZA65_RS20050	0.87	+0.2
4,345,400	-	DZA65_RS20050	0.87	+0.4
4,345,425	+	DZA65_RS20050	0.87	-1.3
4,345,472	+	DZA65_RS20050	0.88	+0.8
4,345,472	+	DZA65_RS20050	0.88	+0.3
4,345,473	-	DZA65_RS20050	0.88	-1.7
4,345,473	-	DZA65_RS20050	0.88	+1.3
4,345,473	-	DZA65_RS20050	0.88	+0.8
4,345,545	+	DZA65_RS20050	0.89	+0.8
4,345,574	+	DZA65_RS20050	0.90	+0.8
4,345,574	+	DZA65_RS20050	0.90	-2.2
4,345,574	+	DZA65_RS20050	0.90	-0.7
4,345,574	+	DZA65_RS20050	0.90	-0.9
4,345,575	-	DZA65_RS20050	0.90	-0.7
4,345,575	-	DZA65_RS20050	0.90	+0.9
4,345,575	-	DZA65_RS20050	0.90	-1.6
4,345,575	-	DZA65_RS20050	0.90	+0.3
4,345,605	+			-1.0
4,345,606	-			+1.3
4,345,606	-			+0.2
4,345,606	-			-1.0
4,345,619	+			-0.7
4,345,619	+			+0.6
4,345,619	+			-0.2
4,345,619	+			-0.2
4,345,619	+			-0.7
4,345,619	+			-1.7
4,345,619	+			+1.4
4,345,619	+			-0.8
4,345,619	+			+1.2
4,345,619	+			+1.3
4,345,619	+			+0.8
4,345,620	-			+0.3
4,345,620	-			+1.1
4,345,620	-			+0.4
4,345,620	-			-1.7
4,345,620	-			+0.5
4,345,620	-			+2.0
4,345,620	-			+0.4
4,345,620	-			-0.2
4,345,620	-			-1.2
4,345,675	-			-1.0
4,345,684	+			+1.4
4,345,684	+			+0.8
4,345,684	+			+1.2
4,345,684	+			-1.0
4,345,684	+			+1.2
4,345,685	-			+0.0
4,345,743	+			-0.2
4,345,744	-			-0.9
4,345,775	-			-1.6
4,345,834	-			-0.7
4,345,863	+			-1.2
4,345,864	-			+0.7
4,345,864	-			+0.2
4,345,864	-			+0.4
4,345,864	-			+0.3
4,345,864	-			+0.4
4,345,864	-			+0.0
4,345,872	+			+0.5
4,345,873	-			+1.0
4,345,878	+			-0.9
4,345,878	+			+0.0
4,345,878	+			+0.5
4,345,879	-			-2.5
4,345,879	-			-0.6
4,345,879	-			-0.8
4,345,879	-			+0.0
4,345,879	-			-2.0
4,345,879	-			-2.0
4,345,879	-			-1.2
4,345,879	-			+1.3
4,345,926	+			+0.8
4,345,926	+			+0.7
4,345,926	+			-0.2
4,345,927	-			-1.2
4,345,927	-			-0.7
4,345,927	-			-0.0
4,345,954	+			+1.3
4,345,955	-			-0.2
4,345,955	-			-0.2
4,345,955	-			-0.2
4,346,025	+			-0.7
4,346,026	-			-0.5
4,346,074	-			+1.0
4,346,125	+			+0.5
4,346,125	+			-1.4
4,346,125	+			+0.8
4,346,125	+			+1.1
4,346,125	+			+0.1
4,346,125	+			-0.0
4,346,125	+			-0.2
4,346,125	+			-2.0
4,346,125	+			+0.2
4,346,126	-			+0.4
4,346,126	-			+0.4
4,346,126	-			+0.1
4,346,126	-			-0.3
4,346,126	-			+0.2
4,346,130	-			-1.5
4,346,155	+			-1.2
4,346,156	-			+0.5
4,346,156	-			+0.6
4,346,160	+			-0.7
4,346,160	+			-0.6
4,346,160	+			+1.1
4,346,160	+			+0.1
4,346,160	+			-0.9
4,346,160	+			-1.0
4,346,160	+			-0.7
4,346,160	+			-0.2
4,346,160	+			+3.0
4,346,160	+			+0.1
4,346,161	-			-1.5
4,346,161	-			+1.8
4,346,281	+			+0.4
4,346,315	-			+1.2
4,346,349	-			+0.6
4,346,383	+			-0.6
4,346,384	-			+0.8
4,346,451	+	DZA65_RS20055	0.13	+0.8
4,346,451	+	DZA65_RS20055	0.13	-1.3
4,346,451	+	DZA65_RS20055	0.13	-0.7
4,346,451	+	DZA65_RS20055	0.13	+0.7
4,346,451	+	DZA65_RS20055	0.13	-0.5
4,346,452	-	DZA65_RS20055	0.13	+1.3
4,346,452	-	DZA65_RS20055	0.13	+1.1
4,346,452	-	DZA65_RS20055	0.13	-0.5
4,346,452	-	DZA65_RS20055	0.13	-1.6
4,346,452	-	DZA65_RS20055	0.13	+0.4
4,346,512	+	DZA65_RS20055	0.20	+1.4
4,346,513	-	DZA65_RS20055	0.20	-0.0
4,346,563	+	DZA65_RS20055	0.26	-1.3
4,346,564	-	DZA65_RS20055	0.26	-1.2
4,346,615	+	DZA65_RS20055	0.31	-0.2
4,346,616	-	DZA65_RS20055	0.31	+1.0
4,346,647	+	DZA65_RS20055	0.35	+0.1
4,346,647	+	DZA65_RS20055	0.35	+0.4
4,346,647	+	DZA65_RS20055	0.35	+0.1
4,346,647	+	DZA65_RS20055	0.35	+0.8
4,346,648	-	DZA65_RS20055	0.35	+0.4
4,346,648	-	DZA65_RS20055	0.35	+0.3
4,346,650	+	DZA65_RS20055	0.35	-1.2
4,346,650	+	DZA65_RS20055	0.35	-0.8
4,346,650	+	DZA65_RS20055	0.35	-0.9
4,346,650	+	DZA65_RS20055	0.35	-0.2
4,346,651	-	DZA65_RS20055	0.35	-1.5
4,346,743	-	DZA65_RS20055	0.45	+0.1
4,346,743	-	DZA65_RS20055	0.45	+1.4
4,346,743	-	DZA65_RS20055	0.45	-0.2
4,346,743	-	DZA65_RS20055	0.45	-0.2
4,346,743	-	DZA65_RS20055	0.45	-0.4
4,346,788	-	DZA65_RS20055	0.50	-0.2
4,346,788	-	DZA65_RS20055	0.50	-0.2
4,346,836	+	DZA65_RS20055	0.55	-2.0
4,346,878	+	DZA65_RS20055	0.60	-1.1
4,346,878	+	DZA65_RS20055	0.60	+0.6
4,346,879	-	DZA65_RS20055	0.60	-1.1
4,346,915	+	DZA65_RS20055	0.64	-0.6
4,346,915	+	DZA65_RS20055	0.64	-1.5
4,346,915	+	DZA65_RS20055	0.64	+0.8
4,346,915	+	DZA65_RS20055	0.64	+0.8
4,346,916	-	DZA65_RS20055	0.64	+0.3
4,346,916	-	DZA65_RS20055	0.64	-0.7
4,346,916	-	DZA65_RS20055	0.64	+0.4
4,346,916	-	DZA65_RS20055	0.64	+0.7
4,346,916	-	DZA65_RS20055	0.64	-0.6
4,346,916	-	DZA65_RS20055	0.64	-1.0
4,346,926	-	DZA65_RS20055	0.65	-0.0
4,346,946	+	DZA65_RS20055	0.67	-0.5
4,346,947	-	DZA65_RS20055	0.68	+1.6
4,346,953	-	DZA65_RS20055	0.68	-2.6
4,347,014	+	DZA65_RS20055	0.75	+0.2
4,347,014	+	DZA65_RS20055	0.75	+0.1
4,347,015	-	DZA65_RS20055	0.75	+0.3
4,347,036	-	DZA65_RS20055	0.77	+2.3
4,347,036	-	DZA65_RS20055	0.77	+1.2
4,347,048	+	DZA65_RS20055	0.79	+1.3
4,347,048	+	DZA65_RS20055	0.79	+0.8
4,347,048	+	DZA65_RS20055	0.79	+0.0
4,347,048	+	DZA65_RS20055	0.79	-0.2
4,347,048	+	DZA65_RS20055	0.79	+0.8
4,347,048	+	DZA65_RS20055	0.79	+0.7
4,347,049	-	DZA65_RS20055	0.79	-0.4
4,347,049	-	DZA65_RS20055	0.79	-1.7
4,347,051	+	DZA65_RS20055	0.79	-1.2
4,347,051	+	DZA65_RS20055	0.79	+1.2
4,347,051	+	DZA65_RS20055	0.79	+0.1
4,347,051	+	DZA65_RS20055	0.79	+0.7
4,347,051	+	DZA65_RS20055	0.79	+0.7
4,347,052	-	DZA65_RS20055	0.79	+0.6
4,347,052	-	DZA65_RS20055	0.79	-0.7
4,347,052	-	DZA65_RS20055	0.79	+0.3
4,347,052	-	DZA65_RS20055	0.79	-0.5
4,347,052	-	DZA65_RS20055	0.79	-0.6
4,347,086	+	DZA65_RS20055	0.83	-0.7
4,347,086	+	DZA65_RS20055	0.83	+0.8
4,347,087	-	DZA65_RS20055	0.83	+1.0
4,347,087	-	DZA65_RS20055	0.83	-2.0
4,347,087	-	DZA65_RS20055	0.83	+0.3
4,347,101	+	DZA65_RS20055	0.84	+0.2
4,347,101	+	DZA65_RS20055	0.84	-0.5
4,347,102	-	DZA65_RS20055	0.84	+1.0
4,347,102	-	DZA65_RS20055	0.84	-1.4
4,347,114	+	DZA65_RS20055	0.86	-0.7
4,347,114	+	DZA65_RS20055	0.86	-0.6
4,347,114	+	DZA65_RS20055	0.86	-3.2
4,347,114	+	DZA65_RS20055	0.86	+0.3
4,347,114	+	DZA65_RS20055	0.86	-0.7
4,347,114	+	DZA65_RS20055	0.86	+0.4
4,347,114	+	DZA65_RS20055	0.86	-0.2
4,347,114	+	DZA65_RS20055	0.86	-0.7
4,347,114	+	DZA65_RS20055	0.86	-0.2
4,347,114	+	DZA65_RS20055	0.86	+0.4
4,347,114	+	DZA65_RS20055	0.86	+1.7
4,347,114	+	DZA65_RS20055	0.86	+0.7
4,347,114	+	DZA65_RS20055	0.86	+1.8
4,347,114	+	DZA65_RS20055	0.86	+1.3
4,347,115	-	DZA65_RS20055	0.86	-0.7
4,347,115	-	DZA65_RS20055	0.86	+0.7
4,347,115	-	DZA65_RS20055	0.86	-0.5
4,347,115	-	DZA65_RS20055	0.86	+0.6
4,347,115	-	DZA65_RS20055	0.86	-1.2
4,347,115	-	DZA65_RS20055	0.86	-2.2
4,347,115	-	DZA65_RS20055	0.86	+2.4
4,347,115	-	DZA65_RS20055	0.86	-0.1
4,347,115	-	DZA65_RS20055	0.86	-1.0
4,347,115	-	DZA65_RS20055	0.86	+1.0
4,347,115	-	DZA65_RS20055	0.86	-0.2
4,347,115	-	DZA65_RS20055	0.86	-0.7
4,347,115	-	DZA65_RS20055	0.86	+0.8
4,347,115	-	DZA65_RS20055	0.86	-0.2
4,347,115	-	DZA65_RS20055	0.86	-0.9
4,347,115	-	DZA65_RS20055	0.86	-1.2
4,347,116	+	DZA65_RS20055	0.86	-0.5
4,347,116	+	DZA65_RS20055	0.86	+0.4
4,347,116	+	DZA65_RS20055	0.86	-0.9
4,347,116	+	DZA65_RS20055	0.86	-0.2
4,347,116	+	DZA65_RS20055	0.86	-0.0
4,347,116	+	DZA65_RS20055	0.86	+2.5
4,347,116	+	DZA65_RS20055	0.86	+1.3
4,347,116	+	DZA65_RS20055	0.86	+1.4
4,347,116	+	DZA65_RS20055	0.86	+1.4
4,347,116	+	DZA65_RS20055	0.86	-2.6
4,347,116	+	DZA65_RS20055	0.86	+1.8
4,347,116	+	DZA65_RS20055	0.86	+0.5
4,347,116	+	DZA65_RS20055	0.86	-1.4
4,347,116	+	DZA65_RS20055	0.86	-1.3
4,347,116	+	DZA65_RS20055	0.86	-0.1
4,347,117	-	DZA65_RS20055	0.86	+0.0
4,347,117	-	DZA65_RS20055	0.86	-0.2
4,347,117	-	DZA65_RS20055	0.86	+0.4
4,347,117	-	DZA65_RS20055	0.86	-0.4
4,347,117	-	DZA65_RS20055	0.86	-2.3
4,347,117	-	DZA65_RS20055	0.86	+0.8
4,347,117	-	DZA65_RS20055	0.86	+0.3
4,347,117	-	DZA65_RS20055	0.86	-1.0
4,347,117	-	DZA65_RS20055	0.86	-0.9
4,347,117	-	DZA65_RS20055	0.86	+0.4
4,347,117	-	DZA65_RS20055	0.86	+0.2
4,347,117	-	DZA65_RS20055	0.86	+1.8
4,347,126	+	DZA65_RS20055	0.87	+0.2
4,347,126	+	DZA65_RS20055	0.87	-0.7
4,347,126	+	DZA65_RS20055	0.87	-1.3
4,347,127	-	DZA65_RS20055	0.87	+0.6
4,347,127	-	DZA65_RS20055	0.87	+0.8
4,347,127	-	DZA65_RS20055	0.87	+0.3
4,347,127	-	DZA65_RS20055	0.87	-2.2
4,347,127	-	DZA65_RS20055	0.87	-0.5
4,347,132	+	DZA65_RS20055	0.88	+0.2
4,347,132	+	DZA65_RS20055	0.88	-0.7
4,347,132	+	DZA65_RS20055	0.88	+0.3
4,347,132	+	DZA65_RS20055	0.88	-0.2
4,347,132	+	DZA65_RS20055	0.88	+0.5
4,347,132	+	DZA65_RS20055	0.88	-0.7
4,347,133	-	DZA65_RS20055	0.88	-0.9
4,347,133	-	DZA65_RS20055	0.88	+0.1
4,347,133	-	DZA65_RS20055	0.88	-0.6
4,347,133	-	DZA65_RS20055	0.88	-0.0
4,347,134	+	DZA65_RS20055	0.88	+0.3
4,347,134	+	DZA65_RS20055	0.88	-1.3
4,347,134	+	DZA65_RS20055	0.88	+0.8
4,347,134	+	DZA65_RS20055	0.88	+0.3
4,347,134	+	DZA65_RS20055	0.88	+0.3
4,347,134	+	DZA65_RS20055	0.88	-0.5
4,347,135	-	DZA65_RS20055	0.88	+1.8
4,347,135	-	DZA65_RS20055	0.88	-0.3
4,347,135	-	DZA65_RS20055	0.88	+1.2
4,347,135	-	DZA65_RS20055	0.88	+0.1
4,347,135	-	DZA65_RS20055	0.88	+0.8
4,347,135	-	DZA65_RS20055	0.88	-0.7
4,347,135	-	DZA65_RS20055	0.88	-0.5
4,347,135	-	DZA65_RS20055	0.88	+0.5
4,347,135	-	DZA65_RS20055	0.88	+0.4
4,347,135	-	DZA65_RS20055	0.88	+2.8
4,347,135	-	DZA65_RS20055	0.88	+0.1
4,347,135	-	DZA65_RS20055	0.88	-1.2
4,347,135	-	DZA65_RS20055	0.88	+0.3
4,347,153	+			-2.3
4,347,187	+			-0.7
4,347,188	-			+0.8
4,347,216	+			+0.2
4,347,243	+			-1.7
4,347,244	-			-1.7
4,347,244	-			-1.7
4,347,244	-			-0.5
4,347,244	-			+0.4
4,347,258	-			+0.4
4,347,265	+			+0.0
4,347,266	-			+1.7
4,347,281	+			-1.0
4,347,281	+			-0.2
4,347,281	+			-0.2
4,347,281	+			-1.5
4,347,281	+			+2.2
4,347,282	-			-0.2
4,347,282	-			+0.2
4,347,300	+			+0.4
4,347,300	+			-0.1
4,347,301	-			-2.1
4,347,306	+			+0.0
4,347,306	+			-2.0
4,347,306	+			+0.3
4,347,306	+			+0.4
4,347,306	+			-0.2
4,347,307	-			+0.3
4,347,307	-			-0.0
4,347,307	-			-2.5
4,347,307	-			-0.7
4,347,307	-			+0.7
4,347,307	-			+0.2
4,347,340	+			-0.4
4,347,340	+			-1.5
4,347,340	+			-0.7
4,347,340	+			-0.2
4,347,341	-			+0.1
4,347,341	-			-0.4
4,347,374	+			+0.6
4,347,374	+			+0.2
4,347,375	-			-0.2
4,347,375	-			-0.2
4,347,392	+			-0.7
4,347,392	+			+0.8
4,347,393	-			+0.3
4,347,393	-			-0.2
4,347,400	+			+3.1
4,347,400	+			+1.6
4,347,401	-			+1.4
4,347,424	+			-0.7
4,347,424	+			-2.5
4,347,424	+			-1.2
4,347,439	-			-0.6
4,347,439	-			-1.2
4,347,446	-			+0.1
4,347,446	-			-1.2
4,347,449	-			+0.8
4,347,449	-			-0.5
4,347,463	+			+1.9
4,347,463	+			-1.0
4,347,464	-			-0.2
4,347,464	-			-1.5
4,347,465	+			+1.5
4,347,465	+			+1.1
4,347,466	-			+1.1
4,347,466	-			+1.8
4,347,467	+			+0.1
4,347,468	-			-0.7
4,347,468	-			-3.1
4,347,468	-			-0.7
4,347,472	-			+0.6
4,347,472	-			+0.7
4,347,472	-			-0.4
4,347,478	+			-0.3
4,347,499	+			-0.4
4,347,754	+	DZA65_RS20060	0.11	+1.1
4,347,755	-	DZA65_RS20060	0.11	-1.0
4,347,755	-	DZA65_RS20060	0.11	+1.4
4,347,793	+	DZA65_RS20060	0.13	-0.5
4,347,810	-	DZA65_RS20060	0.14	-0.0
4,347,810	-	DZA65_RS20060	0.14	+1.3
4,347,828	+	DZA65_RS20060	0.15	+0.8
4,347,835	-	DZA65_RS20060	0.15	-0.3
4,347,881	+	DZA65_RS20060	0.17	+2.2
4,347,882	-	DZA65_RS20060	0.17	-1.2
4,347,882	-	DZA65_RS20060	0.17	-0.6
4,348,158	+	DZA65_RS20060	0.31	+0.1
4,348,169	+	DZA65_RS20060	0.31	+0.6
4,348,238	+	DZA65_RS20060	0.34	-1.6
4,348,238	+	DZA65_RS20060	0.34	-0.7
4,348,238	+	DZA65_RS20060	0.34	-0.2
4,348,238	+	DZA65_RS20060	0.34	-0.2
4,348,238	+	DZA65_RS20060	0.34	-2.0
4,348,238	+	DZA65_RS20060	0.34	-0.6
4,348,238	+	DZA65_RS20060	0.34	+0.6
4,348,238	+	DZA65_RS20060	0.34	+0.1
4,348,238	+	DZA65_RS20060	0.34	+0.1
4,348,238	+	DZA65_RS20060	0.34	+0.4
4,348,238	+	DZA65_RS20060	0.34	-0.3
4,348,238	+	DZA65_RS20060	0.34	-1.1
4,348,238	+	DZA65_RS20060	0.34	+0.8
4,348,238	+	DZA65_RS20060	0.34	-0.7
4,348,238	+	DZA65_RS20060	0.34	+0.0
4,348,238	+	DZA65_RS20060	0.34	+0.8
4,348,238	+	DZA65_RS20060	0.34	+0.8
4,348,239	-	DZA65_RS20060	0.34	+1.4
4,348,239	-	DZA65_RS20060	0.34	-0.2
4,348,239	-	DZA65_RS20060	0.34	-0.7
4,348,239	-	DZA65_RS20060	0.34	+1.3
4,348,239	-	DZA65_RS20060	0.34	+0.8
4,348,239	-	DZA65_RS20060	0.34	-0.2
4,348,239	-	DZA65_RS20060	0.34	-0.5
4,348,239	-	DZA65_RS20060	0.34	-0.7
4,348,239	-	DZA65_RS20060	0.34	+1.0
4,348,239	-	DZA65_RS20060	0.34	-1.6
4,348,239	-	DZA65_RS20060	0.34	+0.3
4,348,239	-	DZA65_RS20060	0.34	-1.0
4,348,239	-	DZA65_RS20060	0.34	-1.5
4,348,239	-	DZA65_RS20060	0.34	+0.8
4,348,239	-	DZA65_RS20060	0.34	+0.8
4,348,239	-	DZA65_RS20060	0.34	+1.3
4,348,239	-	DZA65_RS20060	0.34	+1.3
4,348,240	+	DZA65_RS20060	0.34	+0.8
4,348,240	+	DZA65_RS20060	0.34	+0.6
4,348,240	+	DZA65_RS20060	0.34	-0.3
4,348,240	+	DZA65_RS20060	0.34	-0.2
4,348,241	-	DZA65_RS20060	0.34	-2.2
4,348,241	-	DZA65_RS20060	0.34	-1.7
4,348,241	-	DZA65_RS20060	0.34	-0.6
4,348,241	-	DZA65_RS20060	0.34	+0.4

Or see this region's nucleotide sequence