Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13915

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,989,133	+		DZA65_RS13910	0.28	-2.7
2,989,133	+		DZA65_RS13910	0.28	-0.5
2,989,134	-		DZA65_RS13910	0.28	+0.5
2,989,134	-		DZA65_RS13910	0.28	-2.3
2,989,206	+		DZA65_RS13910	0.33	-1.5
2,989,207	-		DZA65_RS13910	0.33	-1.8
2,989,207	-		DZA65_RS13910	0.33	-1.1
2,989,207	-		DZA65_RS13910	0.33	-1.7
2,989,281	+		DZA65_RS13910	0.38	-0.5
2,989,281	+		DZA65_RS13910	0.38	-1.1
2,989,281	+		DZA65_RS13910	0.38	-2.7
2,989,281	+		DZA65_RS13910	0.38	-0.9
2,989,282	-		DZA65_RS13910	0.39	-0.5
2,989,282	-		DZA65_RS13910	0.39	-0.9
2,989,282	-		DZA65_RS13910	0.39	+0.5
2,989,311	+		DZA65_RS13910	0.41	-0.5
2,989,312	-		DZA65_RS13910	0.41	-0.8
2,989,312	-		DZA65_RS13910	0.41	-0.1
2,989,312	-		DZA65_RS13910	0.41	-2.7
2,989,343	-		DZA65_RS13910	0.43	+0.5
2,989,344	+		DZA65_RS13910	0.43	-1.0
2,989,344	+		DZA65_RS13910	0.43	-3.2
2,989,344	+		DZA65_RS13910	0.43	-1.5
2,989,345	-		DZA65_RS13910	0.43	+0.2
2,989,345	-		DZA65_RS13910	0.43	-1.5
2,989,358	+		DZA65_RS13910	0.44	-1.8
2,989,358	+		DZA65_RS13910	0.44	+1.5
2,989,358	+		DZA65_RS13910	0.44	-2.2
2,989,358	+		DZA65_RS13910	0.44	+0.7
2,989,358	+		DZA65_RS13910	0.44	-1.3
2,989,358	+		DZA65_RS13910	0.44	-2.7
2,989,358	+		DZA65_RS13910	0.44	-0.7
2,989,358	+		DZA65_RS13910	0.44	-2.2
2,989,358	+		DZA65_RS13910	0.44	-0.7
2,989,358	+		DZA65_RS13910	0.44	-1.9
2,989,358	+		DZA65_RS13910	0.44	-0.4
2,989,358	+		DZA65_RS13910	0.44	-1.2
2,989,359	-		DZA65_RS13910	0.44	-0.9
2,989,359	-		DZA65_RS13910	0.44	-2.3
2,989,359	-		DZA65_RS13910	0.44	-0.7
2,989,359	-		DZA65_RS13910	0.44	-1.9
2,989,359	-		DZA65_RS13910	0.44	-3.0
2,989,364	+		DZA65_RS13910	0.44	-2.1
2,989,364	+		DZA65_RS13910	0.44	-1.7
2,989,364	+		DZA65_RS13910	0.44	-1.8
2,989,364	+		DZA65_RS13910	0.44	-1.8
2,989,364	+		DZA65_RS13910	0.44	-4.4
2,989,365	-		DZA65_RS13910	0.45	-1.2
2,989,365	-		DZA65_RS13910	0.45	-2.1
2,989,365	-		DZA65_RS13910	0.45	-2.0
2,989,365	-		DZA65_RS13910	0.45	-1.5
2,989,488	+		DZA65_RS13910	0.54	-3.0
2,989,489	-		DZA65_RS13910	0.54	-2.8
2,989,504	+		DZA65_RS13910	0.55	-1.8
2,989,504	+		DZA65_RS13910	0.55	+0.0
2,989,504	+		DZA65_RS13910	0.55	-1.4
2,989,505	-		DZA65_RS13910	0.55	-2.2
2,989,505	-		DZA65_RS13910	0.55	-0.9
2,989,509	+		DZA65_RS13910	0.55	-2.0
2,989,509	+		DZA65_RS13910	0.55	-1.7
2,989,550	+		DZA65_RS13910	0.58	-1.3
2,989,550	+		DZA65_RS13910	0.58	-0.9
2,989,550	+		DZA65_RS13910	0.58	-0.5
2,989,550	+		DZA65_RS13910	0.58	-1.8
2,989,550	+		DZA65_RS13910	0.58	-2.4
2,989,550	+		DZA65_RS13910	0.58	-0.4
2,989,550	+		DZA65_RS13910	0.58	-2.4
2,989,550	+		DZA65_RS13910	0.58	-1.8
2,989,550	+		DZA65_RS13910	0.58	-0.5
2,989,550	+		DZA65_RS13910	0.58	+0.5
2,989,550	+		DZA65_RS13910	0.58	-1.5
2,989,550	+		DZA65_RS13910	0.58	-1.8
2,989,550	+		DZA65_RS13910	0.58	-3.4
2,989,550	+		DZA65_RS13910	0.58	-2.7
2,989,550	+		DZA65_RS13910	0.58	-1.5
2,989,550	+		DZA65_RS13910	0.58	+0.9
2,989,550	+		DZA65_RS13910	0.58	+1.1
2,989,550	+		DZA65_RS13910	0.58	-2.2
2,989,551	-		DZA65_RS13910	0.58	-1.1
2,989,551	-		DZA65_RS13910	0.58	+0.0
2,989,551	-		DZA65_RS13910	0.58	-1.0
2,989,551	-		DZA65_RS13910	0.58	-2.2
2,989,551	-		DZA65_RS13910	0.58	-0.8
2,989,551	-		DZA65_RS13910	0.58	-3.8
2,989,551	-		DZA65_RS13910	0.58	-1.7
2,989,551	-		DZA65_RS13910	0.58	-2.7
2,989,551	-		DZA65_RS13910	0.58	-0.4
2,989,551	-		DZA65_RS13910	0.58	+0.5
2,989,551	-		DZA65_RS13910	0.58	-1.3
2,989,551	-		DZA65_RS13910	0.58	-2.5
2,989,551	-		DZA65_RS13910	0.58	-3.7
2,989,551	-		DZA65_RS13910	0.58	-2.3
2,989,551	-		DZA65_RS13910	0.58	-2.4
2,989,561	-		DZA65_RS13910	0.59	-1.5
2,989,561	-		DZA65_RS13910	0.59	-1.0
2,989,561	-		DZA65_RS13910	0.59	-1.7
2,989,579	+		DZA65_RS13910	0.60	-2.7
2,989,579	+		DZA65_RS13910	0.60	+0.5
2,989,580	-		DZA65_RS13910	0.60	-2.4
2,989,580	-		DZA65_RS13910	0.60	-3.2
2,989,580	-		DZA65_RS13910	0.60	-1.8
2,989,580	-		DZA65_RS13910	0.60	-2.0
2,989,580	-		DZA65_RS13910	0.60	-1.8
2,989,676	+		DZA65_RS13910	0.67	+0.5
2,989,676	+		DZA65_RS13910	0.67	-1.1
2,989,695	+		DZA65_RS13910	0.69	-1.7
2,989,695	+		DZA65_RS13910	0.69	-2.1
2,989,695	+		DZA65_RS13910	0.69	-2.3
2,989,696	-		DZA65_RS13910	0.69	-0.3
2,989,696	-		DZA65_RS13910	0.69	-3.3
2,989,696	-		DZA65_RS13910	0.69	-1.1
2,989,726	+		DZA65_RS13910	0.71	-0.7
2,989,726	+		DZA65_RS13910	0.71	-1.3
2,989,726	+		DZA65_RS13910	0.71	-2.5
2,989,726	+		DZA65_RS13910	0.71	-3.8
2,989,728	+		DZA65_RS13910	0.71	-1.3
2,989,729	-		DZA65_RS13910	0.71	-2.1
2,989,729	-		DZA65_RS13910	0.71	-1.6
2,989,729	-		DZA65_RS13910	0.71	-1.5
2,989,729	-		DZA65_RS13910	0.71	+0.9
2,989,729	-		DZA65_RS13910	0.71	-2.0
2,989,800	+		DZA65_RS13910	0.76	-1.1
2,989,800	+		DZA65_RS13910	0.76	-0.6
2,989,801	-		DZA65_RS13910	0.76	-0.8
2,989,801	-		DZA65_RS13910	0.76	-0.1
2,989,801	-		DZA65_RS13910	0.76	-1.5
2,989,851	+		DZA65_RS13910	0.80	+0.5
2,989,851	+		DZA65_RS13910	0.80	+0.5
2,989,889	+		DZA65_RS13910	0.83	-1.5
2,989,889	+		DZA65_RS13910	0.83	-1.3
2,989,890	-		DZA65_RS13910	0.83	-3.4
2,989,890	-		DZA65_RS13910	0.83	-0.3
2,989,890	-		DZA65_RS13910	0.83	-0.9
2,989,890	-		DZA65_RS13910	0.83	-1.1
2,989,890	-		DZA65_RS13910	0.83	-1.5
2,989,903	+		DZA65_RS13910	0.84	-2.6
2,989,904	-				-1.3
2,989,904	-		DZA65_RS13910	0.84	-1.5
2,989,942	+		DZA65_RS13910	0.87	-1.1
2,989,942	+		DZA65_RS13910	0.87	-1.1
2,989,942	+		DZA65_RS13910	0.87	-3.2
2,989,942	+		DZA65_RS13910	0.87	-1.5
2,989,942	+		DZA65_RS13910	0.87	-3.1
2,989,943	-		DZA65_RS13910	0.87	+0.5
2,989,943	-		DZA65_RS13910	0.87	-0.8
2,989,966	-		DZA65_RS13910	0.88	-1.2
2,990,015	+				-0.5
2,990,015	+				-2.5
2,990,015	+				-0.7
2,990,015	+				-2.2
2,990,015	+				+0.3
2,990,016	-				-2.1
2,990,113	+				+1.5
2,990,114	-				-1.6
2,990,123	-				-1.5
2,990,147	+				-2.6
2,990,147	+				+0.2
2,990,190	-		DZA65_RS13915	0.13	-1.1
2,990,215	+		DZA65_RS13915	0.19	-0.5
2,990,227	-		DZA65_RS13915	0.21	-1.5
2,990,227	-		DZA65_RS13915	0.21	-1.9
2,990,249	+		DZA65_RS13915	0.26	-1.2
2,990,249	+		DZA65_RS13915	0.26	-2.8
2,990,250	-				-2.5
2,990,250	-		DZA65_RS13915	0.27	-0.2
2,990,250	-		DZA65_RS13915	0.27	-0.2
2,990,260	+		DZA65_RS13915	0.29	-2.1
2,990,270	+		DZA65_RS13915	0.31	-1.5
2,990,270	+		DZA65_RS13915	0.31	-1.1
2,990,271	-		DZA65_RS13915	0.31	-1.8
2,990,271	-		DZA65_RS13915	0.31	-2.1
2,990,271	-		DZA65_RS13915	0.31	-2.8
2,990,312	+		DZA65_RS13915	0.41	-1.4
2,990,312	+		DZA65_RS13915	0.41	-1.3
2,990,313	-		DZA65_RS13915	0.41	-0.0
2,990,321	+		DZA65_RS13915	0.43	-2.4
2,990,321	+		DZA65_RS13915	0.43	-2.1
2,990,321	+		DZA65_RS13915	0.43	-1.6
2,990,321	+		DZA65_RS13915	0.43	-1.7
2,990,322	-		DZA65_RS13915	0.43	-2.2
2,990,322	-		DZA65_RS13915	0.43	-3.4
2,990,392	+		DZA65_RS13915	0.59	-0.8
2,990,392	+		DZA65_RS13915	0.59	-2.8
2,990,393	-		DZA65_RS13915	0.59	-1.5
2,990,395	+		DZA65_RS13915	0.59	-1.9
2,990,395	+		DZA65_RS13915	0.59	-2.0
2,990,395	+		DZA65_RS13915	0.59	+1.0
2,990,395	+		DZA65_RS13915	0.59	-1.8
2,990,395	+		DZA65_RS13915	0.59	-2.2
2,990,395	+		DZA65_RS13915	0.59	+0.5
2,990,395	+		DZA65_RS13915	0.59	-1.3
2,990,396	-		DZA65_RS13915	0.60	-0.2
2,990,396	-		DZA65_RS13915	0.60	-1.0
2,990,396	-		DZA65_RS13915	0.60	-1.6
2,990,396	-		DZA65_RS13915	0.60	-1.8
2,990,396	-		DZA65_RS13915	0.60	-1.2
2,990,396	-		DZA65_RS13915	0.60	-1.1
2,990,465	+		DZA65_RS13915	0.75	-1.4
2,990,465	+		DZA65_RS13915	0.75	-1.3
2,990,465	+		DZA65_RS13915	0.75	-2.3
2,990,465	+				+0.1
2,990,465	+		DZA65_RS13915	0.75	-1.4
2,990,465	+		DZA65_RS13915	0.75	-0.5
2,990,465	+		DZA65_RS13915	0.75	-1.7
2,990,465	+		DZA65_RS13915	0.75	-1.4
2,990,466	-		DZA65_RS13915	0.76	+0.9
2,990,466	-		DZA65_RS13915	0.76	-0.2
2,990,466	-		DZA65_RS13915	0.76	+0.1
2,990,466	-		DZA65_RS13915	0.76	-1.1
2,990,466	-		DZA65_RS13915	0.76	+1.3
2,990,466	-		DZA65_RS13915	0.76	-1.5
2,990,468	+		DZA65_RS13915	0.76	-1.0
2,990,468	+		DZA65_RS13915	0.76	-2.7
2,990,468	+		DZA65_RS13915	0.76	-1.2
2,990,469	-		DZA65_RS13915	0.76	-1.7
2,990,469	-		DZA65_RS13915	0.76	+0.0
2,990,469	-		DZA65_RS13915	0.76	-2.4
2,990,469	-		DZA65_RS13915	0.76	-3.7
2,990,469	-		DZA65_RS13915	0.76	-1.8
2,990,492	+		DZA65_RS13915	0.81	-2.9
2,990,493	-		DZA65_RS13915	0.82	-2.0
2,990,493	-		DZA65_RS13915	0.82	-2.7
2,990,571	+				-0.5
2,990,571	+				-0.5
2,990,572	-				-3.2
2,990,572	-				-0.9
2,990,575	+				-2.1
2,990,575	+				-1.8
2,990,575	+				-1.4
2,990,575	+				-2.1
2,990,575	+				-1.9
2,990,575	+				-2.8
2,990,576	-				-2.5
2,990,576	-				-1.8
2,990,576	-				+0.5
2,990,646	+				+0.5
2,990,646	+				-1.8
2,990,647	-				-0.5
2,990,737	+		DZA65_RS13920	0.12	-3.4
2,990,737	+		DZA65_RS13920	0.12	-0.7
2,990,737	+		DZA65_RS13920	0.12	+0.5
2,990,738	-		DZA65_RS13920	0.12	-2.2
2,990,738	-		DZA65_RS13920	0.12	-0.5
2,990,738	-		DZA65_RS13920	0.12	+0.5
2,990,738	-		DZA65_RS13920	0.12	-2.1
2,990,740	+		DZA65_RS13920	0.12	-2.9
2,990,740	+		DZA65_RS13920	0.12	-2.1
2,990,740	+		DZA65_RS13920	0.12	-2.3
2,990,741	-		DZA65_RS13920	0.12	-0.5
2,990,791	+		DZA65_RS13920	0.16	-0.1
2,990,995	+		DZA65_RS13920	0.31	-1.2
2,990,995	+		DZA65_RS13920	0.31	-2.7
2,990,995	+		DZA65_RS13920	0.31	-1.1
2,990,995	+		DZA65_RS13920	0.31	-1.6
2,990,995	+		DZA65_RS13920	0.31	-3.1
2,990,995	+		DZA65_RS13920	0.31	-0.4
2,990,995	+		DZA65_RS13920	0.31	-2.1
2,990,995	+		DZA65_RS13920	0.31	-2.1
2,990,996	-		DZA65_RS13920	0.32	-1.4
2,990,996	-		DZA65_RS13920	0.32	-2.3
2,990,996	-		DZA65_RS13920	0.32	-2.1
2,990,996	-		DZA65_RS13920	0.32	-1.3
2,990,996	-		DZA65_RS13920	0.32	-2.7
2,991,151	+		DZA65_RS13920	0.43	-0.7
2,991,152	-		DZA65_RS13920	0.43	-2.1
2,991,152	-		DZA65_RS13920	0.43	-0.8
2,991,181	+		DZA65_RS13920	0.45	-2.4
2,991,181	+		DZA65_RS13920	0.45	-2.7
2,991,181	+		DZA65_RS13920	0.45	-1.7
2,991,182	-		DZA65_RS13920	0.45	-0.2
2,991,182	-		DZA65_RS13920	0.45	-3.4
2,991,182	-		DZA65_RS13920	0.45	-0.5
2,991,182	-		DZA65_RS13920	0.45	-0.5
2,991,182	-		DZA65_RS13920	0.45	-2.8
2,991,202	+		DZA65_RS13920	0.47	-1.8
2,991,205	+		DZA65_RS13920	0.47	-3.0
2,991,205	+		DZA65_RS13920	0.47	-1.5
2,991,205	+		DZA65_RS13920	0.47	-2.1
2,991,205	+		DZA65_RS13920	0.47	-1.3
2,991,206	-		DZA65_RS13920	0.47	+1.1
2,991,206	-		DZA65_RS13920	0.47	-4.2
2,991,206	-		DZA65_RS13920	0.47	-0.3
2,991,206	-		DZA65_RS13920	0.47	-1.4
2,991,206	-		DZA65_RS13920	0.47	-1.1
2,991,206	-		DZA65_RS13920	0.47	-2.2
2,991,206	-		DZA65_RS13920	0.47	-2.8
2,991,228	+		DZA65_RS13920	0.49	-1.8
2,991,229	-		DZA65_RS13920	0.49	-2.1
2,991,229	-		DZA65_RS13920	0.49	+0.5
2,991,229	-		DZA65_RS13920	0.49	-2.5
2,991,235	+		DZA65_RS13920	0.49	-1.1
2,991,255	+		DZA65_RS13920	0.51	-2.1
2,991,255	+		DZA65_RS13920	0.51	-0.1
2,991,256	-		DZA65_RS13920	0.51	-1.1
2,991,256	-		DZA65_RS13920	0.51	-1.8
2,991,256	-		DZA65_RS13920	0.51	-1.1
2,991,274	+		DZA65_RS13920	0.52	-2.3
2,991,274	+		DZA65_RS13920	0.52	-0.8
2,991,274	+		DZA65_RS13920	0.52	-1.5
2,991,274	+		DZA65_RS13920	0.52	-3.9
2,991,274	+		DZA65_RS13920	0.52	-2.3
2,991,274	+		DZA65_RS13920	0.52	-2.3
2,991,274	+		DZA65_RS13920	0.52	-2.8
2,991,275	-		DZA65_RS13920	0.52	-1.3
2,991,275	-		DZA65_RS13920	0.52	-3.7
2,991,275	-		DZA65_RS13920	0.52	-2.7
2,991,275	-		DZA65_RS13920	0.52	-2.1
2,991,275	-		DZA65_RS13920	0.52	-2.1
2,991,275	-		DZA65_RS13920	0.52	-1.3
2,991,275	-		DZA65_RS13920	0.52	-3.1
2,991,426	+		DZA65_RS13920	0.64	-2.2
2,991,426	+		DZA65_RS13920	0.64	+0.8
2,991,426	+		DZA65_RS13920	0.64	-1.2
2,991,427	-		DZA65_RS13920	0.64	-3.2
2,991,427	-		DZA65_RS13920	0.64	-2.8
2,991,427	-		DZA65_RS13920	0.64	-0.3
2,991,562	+		DZA65_RS13920	0.74	-2.7
2,991,563	-		DZA65_RS13920	0.74	-0.9