Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13190

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,824,167	-				+0.5
2,824,167	-				+0.9
2,824,167	-				+1.5
2,824,167	-				+0.5
2,824,167	-				-0.1
2,824,170	+				-0.5
2,824,170	+				+0.2
2,824,171	-				-1.8
2,824,171	-				-0.7
2,824,171	-				-0.2
2,824,197	+				-1.7
2,824,197	+				-0.2
2,824,197	+				+0.9
2,824,197	+				+1.1
2,824,197	+				+2.4
2,824,197	+				+0.5
2,824,197	+				+1.8
2,824,198	-				-0.8
2,824,198	-				+0.0
2,824,198	-				-0.2
2,824,198	-				-0.1
2,824,198	-				+1.8
2,824,198	-				+0.1
2,824,201	+				-0.2
2,824,201	+				-0.8
2,824,201	+				-0.1
2,824,202	-				+0.6
2,824,212	-		DZA65_RS13175	0.10	+0.3
2,824,297	+		DZA65_RS13175	0.41	-0.9
2,824,297	+		DZA65_RS13175	0.41	+0.5
2,824,297	+		DZA65_RS13175	0.41	-0.8
2,824,297	+		DZA65_RS13175	0.41	+0.2
2,824,297	+		DZA65_RS13175	0.41	-0.8
2,824,298	-		DZA65_RS13175	0.42	-0.1
2,824,298	-		DZA65_RS13175	0.42	-0.4
2,824,312	-		DZA65_RS13175	0.47	-0.1
2,824,314	+		DZA65_RS13175	0.48	-0.2
2,824,314	+		DZA65_RS13175	0.48	+0.5
2,824,314	+		DZA65_RS13175	0.48	-1.1
2,824,314	+		DZA65_RS13175	0.48	+0.3
2,824,314	+		DZA65_RS13175	0.48	+2.5
2,824,314	+		DZA65_RS13175	0.48	-1.8
2,824,315	-		DZA65_RS13175	0.48	-0.3
2,824,315	-		DZA65_RS13175	0.48	+0.5
2,824,381	+		DZA65_RS13175	0.72	+0.5
2,824,460	-				-2.0
2,824,460	-				-0.1
2,824,475	+				-0.1
2,824,475	+				-1.1
2,824,475	+				-0.2
2,824,477	+				-1.1
2,824,477	+				-1.1
2,824,478	-				+0.5
2,824,509	+				+0.1
2,824,510	-				+2.5
2,824,563	+		DZA65_RS13180	0.13	-2.0
2,824,565	+		DZA65_RS13180	0.15	-1.7
2,824,566	-		DZA65_RS13180	0.16	-1.1
2,824,626	+		DZA65_RS13180	0.73	-0.0
2,824,626	+		DZA65_RS13180	0.73	+0.2
2,824,626	+		DZA65_RS13180	0.73	-0.7
2,824,659	+				-1.5
2,824,660	-				+0.5
2,824,660	-				+0.5
2,824,660	-				+0.8
2,824,660	-				+1.5
2,824,660	-				+0.5
2,824,660	-				+0.1
2,824,660	-				+0.2
2,824,663	+				+0.2
2,824,663	+				+0.2
2,824,701	-				-0.2
2,824,728	+				+0.2
2,824,740	+				-1.0
2,824,740	+				+0.2
2,824,740	+				-1.5
2,824,769	-				-1.5
2,824,796	+				-1.1
2,824,796	+				+1.1
2,824,796	+				-0.8
2,824,797	-				-1.1
2,824,797	-				+1.1
2,824,797	-				+0.5
2,824,797	-				-1.3
2,824,832	-				-0.3
2,824,851	+				+1.1
2,824,851	+				+0.9
2,824,871	+				-0.8
2,824,884	+				+0.0
2,824,884	+				+0.5
2,824,894	+				+0.1
2,824,895	-				-0.3
2,824,895	-				-0.3
2,824,895	-				+0.7
2,824,900	-				+0.5
2,824,910	+				-1.1
2,824,911	-				+0.5
2,824,914	+				-1.5
2,824,914	+				-2.3
2,824,914	+				-0.2
2,824,983	+				+0.5
2,824,983	+				-1.1
2,824,983	+				-0.1
2,824,983	+				+0.3
2,824,983	+				-1.2
2,824,987	-				-3.0
2,824,996	+				-0.5
2,824,996	+				-0.5
2,824,999	+				-0.8
2,825,010	-				+0.5
2,825,013	-				-0.5
2,825,013	-				-0.1
2,825,013	-				+0.5
2,825,023	-				-0.7
2,825,026	-				+0.7
2,825,026	-				+1.8
2,825,026	-				+0.6
2,825,026	-				-0.4
2,825,026	-				+0.5
2,825,153	+				-1.5
2,825,153	+				-0.4
2,825,153	+				-1.1
2,825,153	+				+0.1
2,825,153	+				+0.2
2,825,153	+				+0.5
2,825,154	-				+0.1
2,825,154	-				-1.3
2,825,154	-				-0.8
2,825,161	+				-0.4
2,825,162	-				+0.9
2,825,168	+				-0.3
2,825,200	+				+2.5
2,825,200	+				+0.2
2,825,200	+				+0.1
2,825,203	-				-2.1
2,825,203	-				-0.5
2,825,217	+				-0.1
2,825,218	-				-1.0
2,825,222	-				+0.5
2,825,222	-				+0.5
2,825,253	-				-0.5
2,825,280	+		DZA65_RS13190	0.11	+0.4
2,825,280	+		DZA65_RS13190	0.11	-0.7
2,825,281	-		DZA65_RS13190	0.11	+0.2
2,825,287	-		DZA65_RS13190	0.11	+0.1
2,825,370	+		DZA65_RS13190	0.19	-0.8
2,825,371	-		DZA65_RS13190	0.19	-1.5
2,825,392	-		DZA65_RS13190	0.21	+0.8
2,825,405	+		DZA65_RS13190	0.22	-0.1
2,825,436	+		DZA65_RS13190	0.25	-0.1
2,825,449	-		DZA65_RS13190	0.26	+0.9
2,825,487	-		DZA65_RS13190	0.30	-2.1
2,825,518	+		DZA65_RS13190	0.33	-0.2
2,825,519	-		DZA65_RS13190	0.33	+2.1
2,825,519	-		DZA65_RS13190	0.33	-0.1
2,825,525	-		DZA65_RS13190	0.34	+1.2
2,825,526	+		DZA65_RS13190	0.34	-1.5
2,825,581	-		DZA65_RS13190	0.39	-0.5
2,825,636	-		DZA65_RS13190	0.44	+0.5
2,825,637	+		DZA65_RS13190	0.44	-0.1
2,825,671	+		DZA65_RS13190	0.47	+0.4
2,825,672	-		DZA65_RS13190	0.47	-1.4
2,825,672	-		DZA65_RS13190	0.47	+1.7
2,825,672	-		DZA65_RS13190	0.47	-0.8
2,825,694	+		DZA65_RS13190	0.49	-0.2
2,825,695	-		DZA65_RS13190	0.49	+0.3
2,825,697	-		DZA65_RS13190	0.50	+0.8
2,825,697	-		DZA65_RS13190	0.50	-0.3
2,825,697	-				-1.1
2,825,799	+		DZA65_RS13190	0.59	-1.1
2,825,806	-		DZA65_RS13190	0.60	+1.2
2,825,823	+		DZA65_RS13190	0.61	-2.8
2,826,112	-		DZA65_RS13190	0.88	-2.7
2,826,142	-				-2.1
2,826,148	+				-0.7
2,826,153	-				+0.2
2,826,172	+				+0.9
2,826,269	+				+0.2
2,826,349	+				-1.8
2,826,350	-				-0.5
2,826,350	-				+0.8
2,826,353	+				+0.5
2,826,353	+				+2.5
2,826,469	+				+0.5
2,826,469	+				+0.6
2,826,469	+				+1.5
2,826,469	+				-0.2
2,826,469	+				+0.2
2,826,469	+				+1.2
2,826,469	+				-0.7
2,826,469	+				-1.3
2,826,469	+				+1.1
2,826,470	-				+0.9
2,826,508	+				-0.1
2,826,509	-				-1.7
2,826,524	+				-0.2
2,826,524	+				+0.3
2,826,524	+				+2.5
2,826,525	-				-0.5
2,826,525	-				-1.0
2,826,525	-				+0.8
2,826,528	+				-0.8
2,826,528	+				+0.8
2,826,611	+				+1.5
2,826,697	-				+1.2
2,826,879	+		DZA65_RS13195	0.20	+0.5
2,826,916	-		DZA65_RS13195	0.39	+0.7
2,826,956	+		DZA65_RS13195	0.59	-1.0
2,826,956	+		DZA65_RS13195	0.59	+1.1
2,827,001	+		DZA65_RS13195	0.81	+1.6
2,827,001	+		DZA65_RS13195	0.81	-2.3
2,827,002	-		DZA65_RS13195	0.82	+0.8
2,827,009	+		DZA65_RS13195	0.85	-0.4
2,827,009	+		DZA65_RS13195	0.85	+1.7
2,827,009	+		DZA65_RS13195	0.85	-1.5
2,827,009	+		DZA65_RS13195	0.85	-0.5
2,827,010	-		DZA65_RS13195	0.86	-0.3
2,827,032	+				+0.5
2,827,032	+				-0.5
2,827,032	+				+1.5
2,827,032	+				-1.1
2,827,032	+				+1.1
2,827,032	+				+0.7
2,827,032	+				-0.5
2,827,033	-				-0.2
2,827,033	-				+0.8
2,827,033	-				-0.3
2,827,033	-				+0.6
2,827,033	-				-0.1
2,827,093	+				-0.5
2,827,094	-				-0.0
2,827,097	+				+0.2
2,827,098	-				-2.0
2,827,098	-				+1.1
2,827,098	-				+0.8
2,827,098	-				+0.7
2,827,098	-				-0.5
2,827,109	-		DZA65_RS13200	0.10	+0.8
2,827,155	+		DZA65_RS13200	0.16	-1.5
2,827,156	-		DZA65_RS13200	0.16	-0.5
2,827,164	+		DZA65_RS13200	0.18	-0.3
2,827,165	-		DZA65_RS13200	0.18	-1.2
2,827,165	-		DZA65_RS13200	0.18	+0.3
2,827,165	-		DZA65_RS13200	0.18	+0.5
2,827,199	+		DZA65_RS13200	0.22	-0.1
2,827,199	+		DZA65_RS13200	0.22	-0.1
2,827,199	+		DZA65_RS13200	0.22	-0.5
2,827,199	+		DZA65_RS13200	0.22	+0.9
2,827,199	+		DZA65_RS13200	0.22	-0.2
2,827,199	+		DZA65_RS13200	0.22	-0.7
2,827,199	+		DZA65_RS13200	0.22	-1.1
2,827,199	+		DZA65_RS13200	0.22	-0.6
2,827,200	-		DZA65_RS13200	0.22	+0.2
2,827,200	-		DZA65_RS13200	0.22	+0.2
2,827,200	-		DZA65_RS13200	0.22	+0.5
2,827,200	-		DZA65_RS13200	0.22	-0.8
2,827,200	-		DZA65_RS13200	0.22	+0.8
2,827,200	-		DZA65_RS13200	0.22	-2.0
2,827,200	-		DZA65_RS13200	0.22	-2.1
2,827,200	-		DZA65_RS13200	0.22	-1.3
2,827,200	-		DZA65_RS13200	0.22	-0.8
2,827,221	+		DZA65_RS13200	0.25	-0.0
2,827,221	+		DZA65_RS13200	0.25	-2.4
2,827,221	+		DZA65_RS13200	0.25	+0.3
2,827,221	+		DZA65_RS13200	0.25	-0.5
2,827,221	+				-1.1
2,827,222	-		DZA65_RS13200	0.25	-0.5
2,827,222	-		DZA65_RS13200	0.25	+0.5