Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11670

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,491,374	+				+0.1
2,491,416	+				-0.9
2,491,416	+				-0.2
2,491,417	-				+0.5
2,491,417	-				-0.6
2,491,417	-				+0.4
2,491,419	+				+1.6
2,491,419	+				+0.9
2,491,476	+				-2.8
2,491,476	+				+0.0
2,491,486	-				+1.0
2,491,500	+				+1.0
2,491,500	+				+0.6
2,491,501	-				+0.4
2,491,501	-				-1.6
2,491,517	+				+0.4
2,491,518	-				+0.7
2,491,518	-				-0.2
2,491,552	+				+0.9
2,491,552	+				+0.5
2,491,553	-				-0.6
2,491,556	+				+0.2
2,491,557	-				+1.0
2,491,557	-				+0.3
2,491,568	+				+0.2
2,491,629	-		DZA65_RS11665	0.14	+0.4
2,491,629	-		DZA65_RS11665	0.14	-1.6
2,491,649	-		DZA65_RS11665	0.16	-1.0
2,491,670	+		DZA65_RS11665	0.19	-0.2
2,491,671	-		DZA65_RS11665	0.19	-1.7
2,491,671	-		DZA65_RS11665	0.19	-0.1
2,491,754	+		DZA65_RS11665	0.29	+0.4
2,491,754	+		DZA65_RS11665	0.29	-0.6
2,491,757	+		DZA65_RS11665	0.30	+1.1
2,491,758	-		DZA65_RS11665	0.30	+0.5
2,491,763	+		DZA65_RS11665	0.30	+0.4
2,491,850	+		DZA65_RS11665	0.41	-1.2
2,491,850	+		DZA65_RS11665	0.41	+0.8
2,491,850	+		DZA65_RS11665	0.41	+0.4
2,491,850	+		DZA65_RS11665	0.41	-1.6
2,491,851	-		DZA65_RS11665	0.41	-1.2
2,491,851	-		DZA65_RS11665	0.41	-1.4
2,491,851	-		DZA65_RS11665	0.41	+0.9
2,491,853	+		DZA65_RS11665	0.42	-0.0
2,491,853	+		DZA65_RS11665	0.42	+0.4
2,491,854	-		DZA65_RS11665	0.42	+0.1
2,492,020	+		DZA65_RS11665	0.63	+0.3
2,492,133	+		DZA65_RS11665	0.77	-1.8
2,492,151	+		DZA65_RS11665	0.79	-0.5
2,492,151	+		DZA65_RS11665	0.79	-0.9
2,492,151	+		DZA65_RS11665	0.79	-0.5
2,492,232	+		DZA65_RS11665	0.89	-0.4
2,492,232	+		DZA65_RS11665	0.89	+0.1
2,492,232	+		DZA65_RS11665	0.89	-1.6
2,492,232	+		DZA65_RS11665	0.89	-2.2
2,492,232	+		DZA65_RS11665	0.89	-0.2
2,492,233	-		DZA65_RS11665	0.89	+0.9
2,492,233	-		DZA65_RS11665	0.89	-1.4
2,492,233	-		DZA65_RS11665	0.89	+0.4
2,492,233	-		DZA65_RS11665	0.89	-1.3
2,492,233	-		DZA65_RS11665	0.89	+0.4
2,492,233	-		DZA65_RS11665	0.89	-0.0
2,492,233	-		DZA65_RS11665	0.89	-2.6
2,492,233	-		DZA65_RS11665	0.89	-0.5
2,492,233	-		DZA65_RS11665	0.89	-0.6
2,492,234	+		DZA65_RS11665	0.89	-0.6
2,492,253	+				+1.8
2,492,253	+				-1.6
2,492,303	+				-0.2
2,492,316	+				-0.0
2,492,341	+				+1.8
2,492,342	-				-0.0
2,492,342	-				-1.1
2,492,347	+				+0.5
2,492,380	-				-0.6
2,492,380	-				-2.4
2,492,393	-				-1.3
2,492,393	-				+0.8
2,492,500	+		DZA65_RS11670	0.20	-1.2
2,492,500	+		DZA65_RS11670	0.20	-0.0
2,492,500	+		DZA65_RS11670	0.20	+2.0
2,492,500	+		DZA65_RS11670	0.20	-0.6
2,492,500	+		DZA65_RS11670	0.20	-0.2
2,492,501	-		DZA65_RS11670	0.20	-0.3
2,492,562	+		DZA65_RS11670	0.27	-1.6
2,492,563	-		DZA65_RS11670	0.27	+0.1
2,492,563	-		DZA65_RS11670	0.27	+0.0
2,492,565	+		DZA65_RS11670	0.28	+0.2
2,492,566	-		DZA65_RS11670	0.28	+0.9
2,492,575	+		DZA65_RS11670	0.29	-0.8
2,492,575	+		DZA65_RS11670	0.29	-0.2
2,492,576	-		DZA65_RS11670	0.29	-1.3
2,492,779	+		DZA65_RS11670	0.53	-0.2
2,492,805	-		DZA65_RS11670	0.56	+0.4
2,492,808	-		DZA65_RS11670	0.57	-0.9
2,493,004	+		DZA65_RS11670	0.80	+2.0
2,493,004	+		DZA65_RS11670	0.80	+1.7
2,493,005	-		DZA65_RS11670	0.80	-0.4
2,493,005	-		DZA65_RS11670	0.80	+0.4
2,493,070	+		DZA65_RS11670	0.88	-0.6
2,493,070	+		DZA65_RS11670	0.88	+0.8
2,493,070	+		DZA65_RS11670	0.88	+0.6
2,493,071	-		DZA65_RS11670	0.88	-0.6
2,493,071	-		DZA65_RS11670	0.88	-0.4
2,493,094	+				-0.3
2,493,095	-				+0.4
2,493,138	+				+1.1
2,493,138	+				-0.2
2,493,138	+				+0.8
2,493,138	+				-0.6
2,493,138	+				-0.6
2,493,139	-				+1.1
2,493,139	-				-0.2
2,493,139	-				-0.5
2,493,151	-				-0.9
2,493,257	-				-0.4
2,493,334	-		DZA65_RS11675	0.11	+0.1
2,493,334	-		DZA65_RS11675	0.11	+0.6
2,493,343	-		DZA65_RS11675	0.13	+0.3
2,493,457	-		DZA65_RS11675	0.38	+0.7
2,493,511	+		DZA65_RS11675	0.50	+0.2
2,493,514	+		DZA65_RS11675	0.51	+0.4
2,493,514	+		DZA65_RS11675	0.51	-1.2
2,493,526	+		DZA65_RS11675	0.53	-0.1
2,493,529	-		DZA65_RS11675	0.54	+0.6
2,493,557	-		DZA65_RS11675	0.60	+0.4
2,493,594	+		DZA65_RS11675	0.68	+1.4
2,493,594	+		DZA65_RS11675	0.68	+0.1
2,493,594	+		DZA65_RS11675	0.68	+0.4
2,493,595	-		DZA65_RS11675	0.68	+0.4
2,493,595	-		DZA65_RS11675	0.68	-1.2
2,493,652	+		DZA65_RS11675	0.81	+2.0
2,493,653	-		DZA65_RS11675	0.81	-2.8
2,493,764	+				+0.4
2,493,769	+				+1.2
2,493,814	-				-0.1
2,493,827	+				-1.0
2,493,893	+				+0.1
2,493,893	+				-0.6
2,493,894	-				-0.8
2,493,895	+				+1.4
2,493,895	+				-0.5
2,493,896	-				-0.0
2,493,898	+				-0.2
2,493,899	-				+1.7
2,493,899	-				-0.3
2,493,899	-				-1.0
2,493,926	+				-0.6
2,493,927	-				-0.2
2,493,931	+				+0.0
2,493,992	+				-1.6
2,494,000	+				-1.1
2,494,000	+				+0.6
2,494,001	-				+0.5
2,494,001	-				+0.6
2,494,023	+				-0.0
2,494,053	+				-2.4
2,494,053	+				+0.9
2,494,054	-				-1.2
2,494,054	-				-0.3
2,494,054	-				+0.1
2,494,054	-				+1.2
2,494,120	+				-1.6
2,494,123	+				+0.1
2,494,123	+				-1.1
2,494,123	+				+0.1
2,494,123	+				+2.5
2,494,123	+				-1.4
2,494,123	+				+1.1
2,494,123	+				-0.2
2,494,124	-				-0.6
2,494,124	-				+0.4
2,494,124	-				+0.6
2,494,124	-				-1.3
2,494,124	-				-1.9
2,494,124	-				+0.2
2,494,148	+				+0.4
2,494,149	-				-0.3
2,494,149	-				+0.2
2,494,149	-				-1.2
2,494,149	-				+0.4