Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05380

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05375 and DZA65_RS05380 overlap by 13 nucleotidesDZA65_RS05380 and DZA65_RS05385 are separated by 3 nucleotides DZA65_RS05375: DZA65_RS05375 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 1,105,964 to 1,106,815 _RS05375 DZA65_RS05380: DZA65_RS05380 - cysteine desulfurase sulfur acceptor subunit CsdE, at 1,106,803 to 1,107,246 _RS05380 DZA65_RS05385: DZA65_RS05385 - cysteine desulfurase CsdA, at 1,107,250 to 1,108,455 _RS05385 Position (kb) 1106 1107 1108Strain fitness (log2 ratio) -2 -1 0 1 2at 1105.831 kb on + strandat 1105.832 kb on - strandat 1105.835 kb on + strandat 1105.835 kb on + strandat 1105.835 kb on + strandat 1105.835 kb on + strandat 1105.836 kb on - strandat 1105.836 kb on - strandat 1105.836 kb on - strandat 1105.849 kb on + strandat 1105.850 kb on - strandat 1105.850 kb on - strandat 1105.989 kb on - strandat 1105.989 kb on - strandat 1106.006 kb on + strandat 1106.006 kb on + strandat 1106.006 kb on + strandat 1106.006 kb on + strandat 1106.006 kb on + strandat 1106.007 kb on - strandat 1106.007 kb on - strandat 1106.007 kb on - strandat 1106.007 kb on - strandat 1106.007 kb on - strandat 1106.007 kb on - strandat 1106.011 kb on - strandat 1106.011 kb on - strandat 1106.011 kb on - strandat 1106.039 kb on + strandat 1106.040 kb on - strandat 1106.040 kb on - strandat 1106.040 kb on - strandat 1106.351 kb on + strand, within DZA65_RS05375at 1106.351 kb on + strand, within DZA65_RS05375at 1106.351 kb on + strand, within DZA65_RS05375at 1106.352 kb on - strand, within DZA65_RS05375at 1106.352 kb on - strand, within DZA65_RS05375at 1106.352 kb on - strand, within DZA65_RS05375at 1106.352 kb on - strand, within DZA65_RS05375at 1106.352 kb on - strand, within DZA65_RS05375at 1106.352 kb on - strand, within DZA65_RS05375at 1106.352 kb on - strand, within DZA65_RS05375at 1106.352 kb on - strand, within DZA65_RS05375at 1106.470 kb on + strand, within DZA65_RS05375at 1106.558 kb on - strand, within DZA65_RS05375at 1106.615 kb on + strand, within DZA65_RS05375at 1106.616 kb on - strand, within DZA65_RS05375at 1106.616 kb on - strand, within DZA65_RS05375at 1107.226 kb on + strandat 1107.226 kb on + strandat 1107.226 kb on + strandat 1107.226 kb on + strandat 1107.226 kb on + strandat 1107.226 kb on + strandat 1107.262 kb on + strandat 1107.262 kb on + strandat 1107.320 kb on + strandat 1107.320 kb on + strandat 1107.321 kb on - strandat 1107.448 kb on + strand, within DZA65_RS05385at 1107.448 kb on + strand, within DZA65_RS05385at 1107.448 kb on + strand, within DZA65_RS05385at 1107.448 kb on + strand, within DZA65_RS05385at 1107.448 kb on + strand, within DZA65_RS05385at 1107.448 kb on + strand, within DZA65_RS05385at 1107.449 kb on - strand, within DZA65_RS05385at 1107.449 kb on - strand, within DZA65_RS05385at 1107.449 kb on - strand, within DZA65_RS05385at 1107.449 kb on - strand, within DZA65_RS05385at 1107.449 kb on - strand, within DZA65_RS05385at 1107.449 kb on - strand, within DZA65_RS05385at 1107.460 kb on - strand, within DZA65_RS05385at 1107.675 kb on + strand, within DZA65_RS05385at 1107.676 kb on - strand, within DZA65_RS05385at 1107.676 kb on - strand, within DZA65_RS05385at 1107.676 kb on - strand, within DZA65_RS05385at 1107.758 kb on + strand, within DZA65_RS05385at 1107.786 kb on - strand, within DZA65_RS05385at 1107.809 kb on + strand, within DZA65_RS05385at 1107.809 kb on + strand, within DZA65_RS05385at 1107.810 kb on - strand, within DZA65_RS05385at 1107.810 kb on - strand, within DZA65_RS05385at 1107.810 kb on - strand, within DZA65_RS05385at 1107.810 kb on - strand, within DZA65_RS05385at 1107.810 kb on - strand, within DZA65_RS05385at 1107.906 kb on + strand, within DZA65_RS05385at 1107.906 kb on + strand, within DZA65_RS05385at 1107.906 kb on + strand, within DZA65_RS05385at 1107.906 kb on + strand, within DZA65_RS05385at 1107.906 kb on + strand, within DZA65_RS05385at 1107.907 kb on - strand, within DZA65_RS05385at 1107.907 kb on - strand, within DZA65_RS05385at 1108.020 kb on + strand, within DZA65_RS05385at 1108.020 kb on + strand, within DZA65_RS05385at 1108.020 kb on + strand, within DZA65_RS05385at 1108.020 kb on + strand, within DZA65_RS05385at 1108.020 kb on + strand, within DZA65_RS05385at 1108.020 kb on + strand, within DZA65_RS05385at 1108.020 kb on + strand, within DZA65_RS05385at 1108.020 kb on + strand, within DZA65_RS05385at 1108.021 kb on - strand, within DZA65_RS05385at 1108.021 kb on - strand, within DZA65_RS05385at 1108.021 kb on - strand, within DZA65_RS05385at 1108.021 kb on - strand, within DZA65_RS05385at 1108.021 kb on - strand, within DZA65_RS05385at 1108.021 kb on - strand, within DZA65_RS05385at 1108.021 kb on - strand, within DZA65_RS05385at 1108.021 kb on - strand, within DZA65_RS05385at 1108.138 kb on + strand, within DZA65_RS05385at 1108.154 kb on + strand, within DZA65_RS05385at 1108.154 kb on + strand, within DZA65_RS05385at 1108.154 kb on + strand, within DZA65_RS05385at 1108.155 kb on - strand, within DZA65_RS05385at 1108.155 kb on - strandat 1108.155 kb on - strand, within DZA65_RS05385

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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1,105,831 + -1.0
1,105,832 - -0.6
1,105,835 + -2.0
1,105,835 + +0.1
1,105,835 + -1.0
1,105,835 + -2.4
1,105,836 - +2.0
1,105,836 - +0.1
1,105,836 - -1.2
1,105,849 + -0.1
1,105,850 - +0.5
1,105,850 - -0.5
1,105,989 - +1.0
1,105,989 - +1.4
1,106,006 + +1.0
1,106,006 + +1.6
1,106,006 + -0.4
1,106,006 + -1.4
1,106,006 + -1.4
1,106,007 - -1.7
1,106,007 - +0.6
1,106,007 - -0.4
1,106,007 - -0.8
1,106,007 - -0.0
1,106,007 - +1.1
1,106,011 - -1.1
1,106,011 - -0.8
1,106,011 - -0.4
1,106,039 + -0.1
1,106,040 - +0.6
1,106,040 - -0.4
1,106,040 - -0.2
1,106,351 + DZA65_RS05375 0.45 -1.0
1,106,351 + DZA65_RS05375 0.45 +0.0
1,106,351 + DZA65_RS05375 0.45 +0.1
1,106,352 - DZA65_RS05375 0.46 +0.0
1,106,352 - DZA65_RS05375 0.46 -0.6
1,106,352 - DZA65_RS05375 0.46 -2.0
1,106,352 - DZA65_RS05375 0.46 -0.7
1,106,352 - DZA65_RS05375 0.46 +0.2
1,106,352 - DZA65_RS05375 0.46 +1.4
1,106,352 - DZA65_RS05375 0.46 -1.4
1,106,352 - DZA65_RS05375 0.46 -0.4
1,106,470 + DZA65_RS05375 0.59 -1.2
1,106,558 - DZA65_RS05375 0.70 +0.2
1,106,615 + DZA65_RS05375 0.76 +1.6
1,106,616 - DZA65_RS05375 0.77 -0.3
1,106,616 - DZA65_RS05375 0.77 +0.6
1,107,226 + -2.4
1,107,226 + +0.6
1,107,226 + +1.0
1,107,226 + -1.7
1,107,226 + -1.0
1,107,226 + -1.0
1,107,262 + +2.4
1,107,262 + +0.6
1,107,320 + +0.4
1,107,320 + +0.5
1,107,321 - -0.7
1,107,448 + DZA65_RS05385 0.16 +0.1
1,107,448 + DZA65_RS05385 0.16 +0.6
1,107,448 + DZA65_RS05385 0.16 -2.2
1,107,448 + DZA65_RS05385 0.16 +2.2
1,107,448 + DZA65_RS05385 0.16 +0.7
1,107,448 + DZA65_RS05385 0.16 -0.6
1,107,449 - DZA65_RS05385 0.17 -0.0
1,107,449 - DZA65_RS05385 0.17 +0.5
1,107,449 - DZA65_RS05385 0.17 +0.3
1,107,449 - DZA65_RS05385 0.17 -0.2
1,107,449 - DZA65_RS05385 0.17 -1.2
1,107,449 - DZA65_RS05385 0.17 +0.0
1,107,460 - DZA65_RS05385 0.17 -1.4
1,107,675 + DZA65_RS05385 0.35 +0.3
1,107,676 - DZA65_RS05385 0.35 -0.6
1,107,676 - DZA65_RS05385 0.35 +0.6
1,107,676 - DZA65_RS05385 0.35 +1.0
1,107,758 + DZA65_RS05385 0.42 +0.3
1,107,786 - DZA65_RS05385 0.44 -0.3
1,107,809 + DZA65_RS05385 0.46 +0.6
1,107,809 + DZA65_RS05385 0.46 -0.5
1,107,810 - DZA65_RS05385 0.46 -1.1
1,107,810 - DZA65_RS05385 0.46 +1.2
1,107,810 - DZA65_RS05385 0.46 +0.6
1,107,810 - DZA65_RS05385 0.46 +0.9
1,107,810 - DZA65_RS05385 0.46 +1.0
1,107,906 + DZA65_RS05385 0.54 +0.3
1,107,906 + DZA65_RS05385 0.54 -0.7
1,107,906 + DZA65_RS05385 0.54 -0.8
1,107,906 + DZA65_RS05385 0.54 -0.7
1,107,906 + DZA65_RS05385 0.54 -0.4
1,107,907 - DZA65_RS05385 0.54 -1.2
1,107,907 - DZA65_RS05385 0.54 +1.5
1,108,020 + DZA65_RS05385 0.64 +0.6
1,108,020 + DZA65_RS05385 0.64 -0.4
1,108,020 + DZA65_RS05385 0.64 -0.4
1,108,020 + DZA65_RS05385 0.64 +0.1
1,108,020 + DZA65_RS05385 0.64 -0.6
1,108,020 + DZA65_RS05385 0.64 -0.1
1,108,020 + DZA65_RS05385 0.64 -0.2
1,108,020 + DZA65_RS05385 0.64 -0.1
1,108,021 - DZA65_RS05385 0.64 +1.6
1,108,021 - DZA65_RS05385 0.64 -1.7
1,108,021 - DZA65_RS05385 0.64 -1.8
1,108,021 - DZA65_RS05385 0.64 +0.4
1,108,021 - DZA65_RS05385 0.64 -1.7
1,108,021 - DZA65_RS05385 0.64 +0.0
1,108,021 - DZA65_RS05385 0.64 -1.7
1,108,021 - DZA65_RS05385 0.64 -0.5
1,108,138 + DZA65_RS05385 0.74 +1.6
1,108,154 + DZA65_RS05385 0.75 -0.7
1,108,154 + DZA65_RS05385 0.75 -1.4
1,108,154 + DZA65_RS05385 0.75 -0.6
1,108,155 - DZA65_RS05385 0.75 -1.9
1,108,155 - -0.4
1,108,155 - DZA65_RS05385 0.75 -1.7

Or see this region's nucleotide sequence