Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04445 and DZA65_RS04450 are separated by 62 nucleotides DZA65_RS04450 and DZA65_RS04455 are separated by 62 nucleotides DZA65_RS04455 and DZA65_RS04460 are separated by 2 nucleotides DZA65_RS04460 and DZA65_RS04465 overlap by 8 nucleotides
DZA65_RS04445: DZA65_RS04445 - FAD-dependent oxidoreductase, at 927,081 to 928,652
_RS04445
DZA65_RS04450: DZA65_RS04450 - FMN-binding protein, at 928,715 to 929,065
_RS04450
DZA65_RS04455: DZA65_RS04455 - MFS transporter, at 929,128 to 930,507
_RS04455
DZA65_RS04460: DZA65_RS04460 - cytochrome c nitrite reductase subunit NrfD, at 930,510 to 931,466
_RS04460
DZA65_RS04465: DZA65_RS04465 - 4Fe-4S dicluster domain-containing protein, at 931,459 to 932,157
_RS04465
Position (kb) 929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.291 kb on + strand, within DZA65_RS04445 at 928.292 kb on - strand, within DZA65_RS04445 at 928.292 kb on - strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.458 kb on - strand, within DZA65_RS04445 at 928.548 kb on - strand at 928.617 kb on + strand at 928.653 kb on - strand at 928.653 kb on - strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.656 kb on - strand at 928.656 kb on - strand at 928.656 kb on - strand at 928.672 kb on - strand at 928.672 kb on - strand at 928.737 kb on + strand at 928.972 kb on - strand, within DZA65_RS04450 at 929.065 kb on + strand at 929.065 kb on + strand at 929.066 kb on - strand at 929.066 kb on - strand at 929.066 kb on - strand at 929.089 kb on - strand at 929.097 kb on - strand at 929.099 kb on + strand at 929.099 kb on + strand at 929.100 kb on - strand at 929.103 kb on + strand at 929.104 kb on - strand at 929.104 kb on - strand at 929.104 kb on - strand at 929.146 kb on + strand at 929.146 kb on + strand at 929.146 kb on + strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.704 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.777 kb on + strand, within DZA65_RS04455 at 929.778 kb on - strand, within DZA65_RS04455 at 929.795 kb on + strand, within DZA65_RS04455 at 929.796 kb on - strand, within DZA65_RS04455 at 929.796 kb on - strand, within DZA65_RS04455 at 929.934 kb on + strand, within DZA65_RS04455 at 929.935 kb on - strand, within DZA65_RS04455 at 929.935 kb on - strand, within DZA65_RS04455 at 929.973 kb on - strand, within DZA65_RS04455 at 930.359 kb on + strand, within DZA65_RS04455 at 930.360 kb on - strand, within DZA65_RS04455 at 930.360 kb on - strand, within DZA65_RS04455 at 930.406 kb on - strand at 930.406 kb on - strand at 930.406 kb on - strand at 930.406 kb on - strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.432 kb on - strand at 930.432 kb on - strand at 930.432 kb on - strand at 930.432 kb on - strand at 930.432 kb on - strand at 930.432 kb on - strand at 930.459 kb on + strand at 930.535 kb on + strand at 930.536 kb on - strand at 930.536 kb on - strand at 930.536 kb on - strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.601 kb on + strand at 930.602 kb on - strand at 930.656 kb on + strand, within DZA65_RS04460 at 930.657 kb on - strand, within DZA65_RS04460 at 930.672 kb on - strand, within DZA65_RS04460 at 930.672 kb on - strand, within DZA65_RS04460 at 930.792 kb on + strand, within DZA65_RS04460 at 930.793 kb on - strand, within DZA65_RS04460 at 930.793 kb on - strand, within DZA65_RS04460 at 930.980 kb on + strand, within DZA65_RS04460 at 930.980 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.983 kb on - strand, within DZA65_RS04460 at 931.035 kb on - strand, within DZA65_RS04460 at 931.035 kb on - strand, within DZA65_RS04460 at 931.056 kb on + strand, within DZA65_RS04460 at 931.056 kb on + strand, within DZA65_RS04460 at 931.127 kb on - strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.225 kb on + strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.278 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.351 kb on + strand, within DZA65_RS04460 at 931.411 kb on + strand at 931.411 kb on + strand at 931.412 kb on - strand at 931.412 kb on - strand at 931.434 kb on + strand at 931.481 kb on + strand at 931.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 928,192 + DZA65_RS04445 0.71 -0.1 928,192 + DZA65_RS04445 0.71 -0.9 928,192 + DZA65_RS04445 0.71 -1.7 928,192 + DZA65_RS04445 0.71 +0.6 928,192 + DZA65_RS04445 0.71 +0.6 928,192 + DZA65_RS04445 0.71 +0.2 928,192 + DZA65_RS04445 0.71 -2.8 928,192 + DZA65_RS04445 0.71 +1.0 928,192 + DZA65_RS04445 0.71 +0.3 928,193 - DZA65_RS04445 0.71 -1.4 928,193 - DZA65_RS04445 0.71 +0.6 928,193 - DZA65_RS04445 0.71 -0.3 928,193 - DZA65_RS04445 0.71 +1.0 928,193 - DZA65_RS04445 0.71 -0.2 928,193 - DZA65_RS04445 0.71 -1.4 928,193 - DZA65_RS04445 0.71 +0.6 928,193 - DZA65_RS04445 0.71 +1.0 928,193 - DZA65_RS04445 0.71 -1.4 928,291 + DZA65_RS04445 0.77 +0.1 928,292 - DZA65_RS04445 0.77 +0.3 928,292 - DZA65_RS04445 0.77 +2.6 928,329 + DZA65_RS04445 0.79 -1.9 928,329 + DZA65_RS04445 0.79 -0.5 928,329 + DZA65_RS04445 0.79 +1.4 928,329 + DZA65_RS04445 0.79 -0.6 928,330 - DZA65_RS04445 0.79 +0.1 928,330 - DZA65_RS04445 0.79 -0.4 928,330 - DZA65_RS04445 0.79 -1.9 928,330 - DZA65_RS04445 0.79 +0.6 928,330 - DZA65_RS04445 0.79 +0.2 928,458 - DZA65_RS04445 0.88 +1.1 928,548 - +0.1 928,617 + -1.4 928,653 - +1.1 928,653 - +0.8 928,655 + +0.6 928,655 + +0.6 928,655 + -0.4 928,655 + +0.8 928,656 - +0.2 928,656 - -2.1 928,656 - -0.7 928,672 - +0.5 928,672 - +0.3 928,737 + +0.5 928,972 - DZA65_RS04450 0.73 +1.1 929,065 + -0.9 929,065 + +0.0 929,066 - +2.4 929,066 - -1.7 929,066 - -0.2 929,089 - +1.9 929,097 - +0.4 929,099 + +0.3 929,099 + -0.5 929,100 - +0.1 929,103 + +0.0 929,104 - -0.4 929,104 - +2.0 929,104 - -0.2 929,146 + -0.1 929,146 + -1.4 929,146 + -0.1 929,147 - -0.2 929,147 - -1.9 929,147 - -0.4 929,147 - +2.0 929,149 + -1.4 929,149 + -0.5 929,149 + +0.2 929,149 + +1.5 929,149 + -0.2 929,149 + +1.6 929,149 + -0.5 929,150 - -0.5 929,150 - +1.2 929,150 - -1.7 929,150 - +0.3 929,150 - -0.4 929,150 - -0.4 929,150 - +0.6 929,150 - -0.9 929,150 - -0.2 929,150 - +1.2 929,150 - +0.4 929,150 - +0.1 929,150 - -0.7 929,150 - -0.6 929,150 - +0.2 929,704 + DZA65_RS04455 0.42 +0.6 929,726 + DZA65_RS04455 0.43 +0.6 929,726 + DZA65_RS04455 0.43 +0.6 929,726 + DZA65_RS04455 0.43 -0.5 929,726 + DZA65_RS04455 0.43 -0.9 929,726 + DZA65_RS04455 0.43 -1.4 929,726 + DZA65_RS04455 0.43 -0.4 929,726 + DZA65_RS04455 0.43 -0.1 929,726 + DZA65_RS04455 0.43 +1.4 929,727 - DZA65_RS04455 0.43 +0.4 929,727 - DZA65_RS04455 0.43 -0.6 929,727 - DZA65_RS04455 0.43 +0.5 929,727 - DZA65_RS04455 0.43 -0.9 929,727 - DZA65_RS04455 0.43 +0.2 929,727 - DZA65_RS04455 0.43 -0.8 929,727 - DZA65_RS04455 0.43 +0.1 929,777 + DZA65_RS04455 0.47 -1.4 929,778 - DZA65_RS04455 0.47 -0.3 929,795 + DZA65_RS04455 0.48 -1.9 929,796 - DZA65_RS04455 0.48 +1.2 929,796 - DZA65_RS04455 0.48 +0.6 929,934 + DZA65_RS04455 0.58 -0.8 929,935 - DZA65_RS04455 0.58 +0.9 929,935 - DZA65_RS04455 0.58 +0.1 929,973 - DZA65_RS04455 0.61 -0.2 930,359 + DZA65_RS04455 0.89 -1.8 930,360 - DZA65_RS04455 0.89 -0.4 930,360 - DZA65_RS04455 0.89 -0.9 930,406 - -1.6 930,406 - -1.7 930,406 - -0.3 930,406 - -0.9 930,431 + +1.6 930,431 + +0.1 930,431 + -1.2 930,431 + +0.8 930,431 + +0.2 930,431 + +0.3 930,431 + +0.2 930,431 + -0.8 930,431 + -1.7 930,431 + -0.3 930,431 + -0.4 930,431 + +0.8 930,431 + +1.2 930,432 - +2.6 930,432 - -0.1 930,432 - +0.1 930,432 - +0.4 930,432 - -0.4 930,432 - -0.2 930,459 + +0.1 930,535 + -0.2 930,536 - -0.9 930,536 - +0.2 930,536 - -1.7 930,561 + +0.5 930,561 + -0.2 930,561 + -1.7 930,561 + +0.6 930,562 - +0.2 930,562 - -0.5 930,562 - +0.3 930,562 - -0.4 930,562 - -0.9 930,562 - -2.2 930,562 - -0.5 930,601 + +0.1 930,602 - -0.4 930,656 + DZA65_RS04460 0.15 +0.2 930,657 - DZA65_RS04460 0.15 +1.1 930,672 - DZA65_RS04460 0.17 -0.9 930,672 - DZA65_RS04460 0.17 -0.3 930,792 + DZA65_RS04460 0.29 -0.2 930,793 - DZA65_RS04460 0.30 +0.1 930,793 - DZA65_RS04460 0.30 -1.4 930,980 + DZA65_RS04460 0.49 +0.6 930,980 + DZA65_RS04460 0.49 -0.5 930,982 + DZA65_RS04460 0.49 +0.4 930,982 + DZA65_RS04460 0.49 -1.5 930,982 + DZA65_RS04460 0.49 -1.7 930,983 - DZA65_RS04460 0.49 -0.3 931,035 - DZA65_RS04460 0.55 -0.8 931,035 - DZA65_RS04460 0.55 -0.7 931,056 + DZA65_RS04460 0.57 -2.9 931,056 + DZA65_RS04460 0.57 +0.6 931,127 - DZA65_RS04460 0.64 -2.5 931,162 + DZA65_RS04460 0.68 -0.3 931,162 + DZA65_RS04460 0.68 -1.3 931,162 + DZA65_RS04460 0.68 +0.1 931,162 + DZA65_RS04460 0.68 -0.5 931,162 + DZA65_RS04460 0.68 -1.4 931,162 + DZA65_RS04460 0.68 +0.1 931,162 + DZA65_RS04460 0.68 -0.0 931,162 + DZA65_RS04460 0.68 +0.3 931,162 + DZA65_RS04460 0.68 +0.0 931,162 + DZA65_RS04460 0.68 +0.1 931,163 - DZA65_RS04460 0.68 -1.2 931,163 - DZA65_RS04460 0.68 +0.6 931,163 - DZA65_RS04460 0.68 -0.9 931,163 - DZA65_RS04460 0.68 -0.4 931,163 - DZA65_RS04460 0.68 +0.6 931,163 - DZA65_RS04460 0.68 -1.3 931,163 - DZA65_RS04460 0.68 +0.1 931,163 - DZA65_RS04460 0.68 +1.6 931,163 - DZA65_RS04460 0.68 -1.2 931,211 - DZA65_RS04460 0.73 +0.0 931,211 - DZA65_RS04460 0.73 -2.4 931,211 - DZA65_RS04460 0.73 -2.9 931,225 + DZA65_RS04460 0.75 -0.1 931,226 - DZA65_RS04460 0.75 +1.6 931,226 - DZA65_RS04460 0.75 -0.5 931,226 - DZA65_RS04460 0.75 -0.9 931,226 - DZA65_RS04460 0.75 -0.4 931,278 + DZA65_RS04460 0.80 -0.3 931,328 + DZA65_RS04460 0.85 -0.7 931,328 + DZA65_RS04460 0.85 -1.7 931,328 + DZA65_RS04460 0.85 +0.5 931,328 + DZA65_RS04460 0.85 -0.4 931,329 - DZA65_RS04460 0.86 -0.6 931,329 - DZA65_RS04460 0.86 +0.4 931,329 - DZA65_RS04460 0.86 -1.0 931,351 + DZA65_RS04460 0.88 -1.0 931,411 + -0.6 931,411 + -0.5 931,412 - -0.2 931,412 - -1.4 931,434 + +1.1 931,481 + +0.9 931,482 - +0.8
Or see this region's nucleotide sequence