Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01950 and DZA65_RS01955 are separated by 444 nucleotides DZA65_RS01955 and DZA65_RS22785 are separated by 15 nucleotides DZA65_RS22785 and DZA65_RS01960 are separated by 433 nucleotides
DZA65_RS01950: DZA65_RS01950 - indoleacetamide hydrolase, at 428,844 to 430,187
_RS01950
DZA65_RS01955: DZA65_RS01955 - isopentenyl transferase, at 430,632 to 431,351
_RS01955
DZA65_RS22785: DZA65_RS22785 - hypothetical protein, at 431,367 to 431,870
_RS22785
DZA65_RS01960: DZA65_RS01960 - 2-iminobutanoate/2-iminopropanoate deaminase, at 432,304 to 432,690
_RS01960
Position (kb) 430
431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 429.661 kb on + strand, within DZA65_RS01950 at 429.692 kb on + strand, within DZA65_RS01950 at 429.710 kb on + strand, within DZA65_RS01950 at 429.710 kb on + strand, within DZA65_RS01950 at 429.724 kb on - strand, within DZA65_RS01950 at 429.754 kb on + strand, within DZA65_RS01950 at 429.754 kb on + strand, within DZA65_RS01950 at 429.755 kb on - strand, within DZA65_RS01950 at 429.825 kb on - strand, within DZA65_RS01950 at 429.838 kb on - strand, within DZA65_RS01950 at 429.870 kb on + strand, within DZA65_RS01950 at 429.870 kb on + strand, within DZA65_RS01950 at 429.871 kb on - strand, within DZA65_RS01950 at 429.890 kb on + strand, within DZA65_RS01950 at 429.890 kb on + strand, within DZA65_RS01950 at 429.891 kb on - strand, within DZA65_RS01950 at 429.918 kb on - strand, within DZA65_RS01950 at 429.929 kb on + strand, within DZA65_RS01950 at 429.930 kb on - strand, within DZA65_RS01950 at 429.933 kb on + strand, within DZA65_RS01950 at 429.933 kb on + strand, within DZA65_RS01950 at 429.934 kb on - strand, within DZA65_RS01950 at 429.943 kb on + strand, within DZA65_RS01950 at 429.944 kb on + strand, within DZA65_RS01950 at 429.944 kb on + strand, within DZA65_RS01950 at 429.944 kb on + strand, within DZA65_RS01950 at 429.945 kb on - strand, within DZA65_RS01950 at 429.945 kb on - strand, within DZA65_RS01950 at 429.945 kb on - strand, within DZA65_RS01950 at 429.945 kb on - strand, within DZA65_RS01950 at 429.952 kb on + strand, within DZA65_RS01950 at 429.952 kb on + strand, within DZA65_RS01950 at 429.952 kb on + strand, within DZA65_RS01950 at 429.952 kb on + strand, within DZA65_RS01950 at 429.952 kb on + strand, within DZA65_RS01950 at 429.952 kb on + strand, within DZA65_RS01950 at 429.953 kb on - strand, within DZA65_RS01950 at 429.953 kb on - strand, within DZA65_RS01950 at 429.953 kb on - strand, within DZA65_RS01950 at 429.955 kb on - strand, within DZA65_RS01950 at 429.955 kb on - strand, within DZA65_RS01950 at 429.955 kb on - strand at 430.023 kb on - strand, within DZA65_RS01950 at 430.028 kb on + strand, within DZA65_RS01950 at 430.028 kb on + strand, within DZA65_RS01950 at 430.096 kb on + strand at 430.096 kb on + strand at 430.096 kb on + strand at 430.097 kb on - strand at 430.097 kb on - strand at 430.097 kb on - strand at 430.097 kb on - strand at 430.097 kb on - strand at 430.109 kb on + strand at 430.109 kb on + strand at 430.110 kb on - strand at 430.148 kb on - strand at 430.165 kb on + strand at 430.177 kb on + strand at 430.191 kb on + strand at 430.219 kb on + strand at 430.219 kb on + strand at 430.219 kb on + strand at 430.220 kb on - strand at 430.220 kb on - strand at 430.220 kb on - strand at 430.220 kb on - strand at 430.231 kb on - strand at 430.265 kb on + strand at 430.266 kb on - strand at 430.266 kb on - strand at 430.266 kb on - strand at 430.276 kb on + strand at 430.276 kb on + strand at 430.277 kb on - strand at 430.277 kb on - strand at 430.277 kb on - strand at 430.302 kb on + strand at 430.303 kb on - strand at 430.303 kb on - strand at 430.306 kb on - strand at 430.398 kb on + strand at 430.398 kb on + strand at 430.398 kb on + strand at 430.399 kb on - strand at 430.399 kb on - strand at 430.406 kb on + strand at 430.422 kb on - strand at 430.439 kb on - strand at 430.445 kb on - strand at 430.445 kb on - strand at 430.445 kb on - strand at 430.445 kb on - strand at 430.445 kb on - strand at 430.450 kb on - strand at 430.450 kb on - strand at 430.450 kb on - strand at 430.521 kb on + strand at 430.531 kb on - strand at 430.531 kb on - strand at 430.531 kb on - strand at 430.531 kb on - strand at 430.531 kb on - strand at 430.533 kb on - strand at 430.533 kb on - strand at 430.534 kb on + strand at 430.534 kb on + strand at 430.534 kb on + strand at 430.534 kb on + strand at 430.534 kb on + strand at 430.534 kb on + strand at 430.535 kb on - strand at 430.538 kb on + strand at 430.539 kb on - strand at 430.589 kb on - strand at 430.591 kb on + strand at 430.594 kb on + strand at 430.595 kb on - strand at 430.696 kb on - strand at 430.711 kb on + strand, within DZA65_RS01955 at 430.712 kb on - strand, within DZA65_RS01955 at 430.718 kb on + strand, within DZA65_RS01955 at 430.734 kb on + strand, within DZA65_RS01955 at 430.754 kb on + strand, within DZA65_RS01955 at 430.887 kb on + strand, within DZA65_RS01955 at 430.912 kb on + strand, within DZA65_RS01955 at 430.912 kb on + strand, within DZA65_RS01955 at 431.019 kb on + strand, within DZA65_RS01955 at 431.165 kb on + strand, within DZA65_RS01955 at 431.165 kb on + strand, within DZA65_RS01955 at 431.165 kb on + strand, within DZA65_RS01955 at 431.168 kb on - strand, within DZA65_RS01955 at 431.168 kb on - strand, within DZA65_RS01955 at 431.169 kb on + strand, within DZA65_RS01955 at 431.170 kb on - strand, within DZA65_RS01955 at 431.234 kb on - strand, within DZA65_RS01955 at 431.257 kb on - strand, within DZA65_RS01955 at 431.257 kb on - strand, within DZA65_RS01955 at 431.286 kb on + strand at 431.352 kb on - strand at 431.380 kb on + strand at 431.424 kb on + strand, within DZA65_RS22785 at 431.436 kb on + strand, within DZA65_RS22785 at 431.479 kb on + strand, within DZA65_RS22785 at 431.627 kb on + strand, within DZA65_RS22785 at 431.627 kb on + strand, within DZA65_RS22785 at 431.627 kb on + strand, within DZA65_RS22785 at 431.628 kb on - strand, within DZA65_RS22785 at 431.771 kb on - strand, within DZA65_RS22785 at 431.772 kb on + strand, within DZA65_RS22785 at 431.772 kb on + strand, within DZA65_RS22785 at 431.773 kb on - strand, within DZA65_RS22785 at 431.773 kb on - strand, within DZA65_RS22785 at 431.928 kb on + strand at 431.928 kb on + strand at 431.929 kb on - strand at 431.929 kb on - strand at 431.931 kb on - strand at 431.938 kb on + strand at 432.007 kb on + strand at 432.008 kb on - strand at 432.022 kb on + strand at 432.045 kb on + strand at 432.072 kb on + strand at 432.073 kb on - strand at 432.077 kb on + strand at 432.078 kb on - strand at 432.078 kb on - strand at 432.078 kb on - strand at 432.091 kb on + strand at 432.107 kb on - strand at 432.216 kb on + strand at 432.217 kb on - strand at 432.249 kb on - strand at 432.301 kb on + strand at 432.301 kb on + strand at 432.301 kb on + strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.302 kb on - strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.305 kb on + strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand at 432.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 429,661 + DZA65_RS01950 0.61 +0.1 429,692 + DZA65_RS01950 0.63 -0.4 429,710 + DZA65_RS01950 0.64 -2.0 429,710 + DZA65_RS01950 0.64 -0.6 429,724 - DZA65_RS01950 0.65 -0.6 429,754 + DZA65_RS01950 0.68 +0.0 429,754 + DZA65_RS01950 0.68 -0.8 429,755 - DZA65_RS01950 0.68 +0.8 429,825 - DZA65_RS01950 0.73 +1.5 429,838 - DZA65_RS01950 0.74 -1.8 429,870 + DZA65_RS01950 0.76 +0.3 429,870 + DZA65_RS01950 0.76 +0.8 429,871 - DZA65_RS01950 0.76 +1.2 429,890 + DZA65_RS01950 0.78 -2.4 429,890 + DZA65_RS01950 0.78 -1.4 429,891 - DZA65_RS01950 0.78 +0.8 429,918 - DZA65_RS01950 0.80 +1.4 429,929 + DZA65_RS01950 0.81 -0.4 429,930 - DZA65_RS01950 0.81 -0.4 429,933 + DZA65_RS01950 0.81 +0.7 429,933 + DZA65_RS01950 0.81 -0.1 429,934 - DZA65_RS01950 0.81 +1.0 429,943 + DZA65_RS01950 0.82 +1.4 429,944 + DZA65_RS01950 0.82 -1.6 429,944 + DZA65_RS01950 0.82 -1.1 429,944 + DZA65_RS01950 0.82 -1.4 429,945 - DZA65_RS01950 0.82 -3.0 429,945 - DZA65_RS01950 0.82 -1.5 429,945 - DZA65_RS01950 0.82 +0.8 429,945 - DZA65_RS01950 0.82 +1.0 429,952 + DZA65_RS01950 0.82 +2.3 429,952 + DZA65_RS01950 0.82 -0.8 429,952 + DZA65_RS01950 0.82 -2.6 429,952 + DZA65_RS01950 0.82 +0.8 429,952 + DZA65_RS01950 0.82 -1.1 429,952 + DZA65_RS01950 0.82 +0.3 429,953 - DZA65_RS01950 0.83 -0.2 429,953 - DZA65_RS01950 0.83 +0.6 429,953 - DZA65_RS01950 0.83 +1.4 429,955 - DZA65_RS01950 0.83 -1.5 429,955 - DZA65_RS01950 0.83 -1.8 429,955 - +1.3 430,023 - DZA65_RS01950 0.88 -0.9 430,028 + DZA65_RS01950 0.88 +1.6 430,028 + DZA65_RS01950 0.88 -1.8 430,096 + +0.3 430,096 + +0.2 430,096 + -0.5 430,097 - +0.8 430,097 - +1.0 430,097 - -0.4 430,097 - -0.7 430,097 - +0.3 430,109 + -0.8 430,109 + +1.0 430,110 - +0.5 430,148 - -1.2 430,165 + -0.1 430,177 + -0.2 430,191 + +0.4 430,219 + -0.0 430,219 + -0.8 430,219 + +0.4 430,220 - +0.1 430,220 - -1.5 430,220 - +1.1 430,220 - -1.5 430,231 - +0.1 430,265 + +1.8 430,266 - -0.6 430,266 - +0.2 430,266 - -0.5 430,276 + -0.8 430,276 + +0.2 430,277 - +0.2 430,277 - -0.8 430,277 - +0.2 430,302 + -0.8 430,303 - -1.1 430,303 - +0.8 430,306 - -0.9 430,398 + +0.8 430,398 + -1.5 430,398 + -0.5 430,399 - -1.2 430,399 - +0.2 430,406 + +0.7 430,422 - -0.2 430,439 - -0.6 430,445 - -0.1 430,445 - +0.8 430,445 - +1.8 430,445 - -0.0 430,445 - +1.6 430,450 - +0.3 430,450 - +0.2 430,450 - -0.2 430,521 + +0.6 430,531 - +1.1 430,531 - -1.5 430,531 - -1.2 430,531 - -1.4 430,531 - -0.4 430,533 - +1.8 430,533 - -1.0 430,534 + +1.1 430,534 + -0.2 430,534 + -0.7 430,534 + -0.8 430,534 + +1.6 430,534 + -1.9 430,535 - -1.6 430,538 + +2.4 430,539 - -0.2 430,589 - +1.1 430,591 + +0.3 430,594 + -0.2 430,595 - -0.8 430,696 - -2.5 430,711 + DZA65_RS01955 0.11 -0.5 430,712 - DZA65_RS01955 0.11 -0.8 430,718 + DZA65_RS01955 0.12 +0.5 430,734 + DZA65_RS01955 0.14 -1.9 430,754 + DZA65_RS01955 0.17 +1.2 430,887 + DZA65_RS01955 0.35 -0.8 430,912 + DZA65_RS01955 0.39 +0.1 430,912 + DZA65_RS01955 0.39 -0.6 431,019 + DZA65_RS01955 0.54 +0.5 431,165 + DZA65_RS01955 0.74 +1.4 431,165 + DZA65_RS01955 0.74 +0.3 431,165 + DZA65_RS01955 0.74 -2.4 431,168 - DZA65_RS01955 0.74 +1.4 431,168 - DZA65_RS01955 0.74 -1.5 431,169 + DZA65_RS01955 0.75 -1.6 431,170 - DZA65_RS01955 0.75 -0.4 431,234 - DZA65_RS01955 0.84 -0.8 431,257 - DZA65_RS01955 0.87 -0.9 431,257 - DZA65_RS01955 0.87 +0.8 431,286 + +1.1 431,352 - +0.5 431,380 + -0.4 431,424 + DZA65_RS22785 0.11 -0.1 431,436 + DZA65_RS22785 0.14 -1.4 431,479 + DZA65_RS22785 0.22 +0.0 431,627 + DZA65_RS22785 0.52 +0.2 431,627 + DZA65_RS22785 0.52 +0.5 431,627 + DZA65_RS22785 0.52 -1.8 431,628 - DZA65_RS22785 0.52 +0.2 431,771 - DZA65_RS22785 0.80 -0.2 431,772 + DZA65_RS22785 0.80 +0.1 431,772 + DZA65_RS22785 0.80 +1.3 431,773 - DZA65_RS22785 0.81 -0.2 431,773 - DZA65_RS22785 0.81 +0.6 431,928 + -0.8 431,928 + -0.4 431,929 - -0.2 431,929 - -0.2 431,931 - -0.2 431,938 + +0.8 432,007 + +1.0 432,008 - -0.8 432,022 + +0.2 432,045 + -0.2 432,072 + +0.8 432,073 - +1.8 432,077 + +0.8 432,078 - -0.8 432,078 - +1.3 432,078 - -0.5 432,091 + -1.4 432,107 - -1.3 432,216 + -0.4 432,217 - +0.8 432,249 - -0.2 432,301 + -1.5 432,301 + -1.1 432,301 + -0.3 432,302 - +2.4 432,302 - +0.2 432,302 - +0.6 432,302 - +0.0 432,305 + +0.1 432,305 + +1.7 432,305 + +0.2 432,305 + -0.8 432,305 + +0.5 432,305 + -1.6 432,305 + +0.2 432,305 + +0.3 432,305 + -0.2 432,305 + -2.6 432,305 + +0.3 432,306 - -0.5 432,306 - -2.0 432,306 - +1.6 432,306 - +0.8 432,306 - -1.6 432,306 - -1.2 432,306 - -1.2
Or see this region's nucleotide sequence