Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01410

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01405 and DZA65_RS01410 are separated by 314 nucleotidesDZA65_RS01410 and DZA65_RS01415 are separated by 103 nucleotides DZA65_RS01405: DZA65_RS01405 - RNase E specificity factor CsrD, at 308,301 to 310,247 _RS01405 DZA65_RS01410: DZA65_RS01410 - rod shape-determining protein MreB, at 310,562 to 311,605 _RS01410 DZA65_RS01415: DZA65_RS01415 - rod shape-determining protein MreC, at 311,709 to 312,827 _RS01415 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 309.612 kb on + strand, within DZA65_RS01405at 309.612 kb on + strand, within DZA65_RS01405at 309.612 kb on + strand, within DZA65_RS01405at 309.612 kb on + strand, within DZA65_RS01405at 309.612 kb on + strand, within DZA65_RS01405at 309.613 kb on - strand, within DZA65_RS01405at 309.645 kb on + strand, within DZA65_RS01405at 309.645 kb on + strand, within DZA65_RS01405at 309.645 kb on + strand, within DZA65_RS01405at 309.645 kb on + strand, within DZA65_RS01405at 309.645 kb on + strand, within DZA65_RS01405at 309.645 kb on + strand, within DZA65_RS01405at 309.645 kb on + strand, within DZA65_RS01405at 309.646 kb on - strand, within DZA65_RS01405at 309.646 kb on - strand, within DZA65_RS01405at 309.646 kb on - strand, within DZA65_RS01405at 309.646 kb on - strand, within DZA65_RS01405at 309.646 kb on - strand, within DZA65_RS01405at 309.646 kb on - strand, within DZA65_RS01405at 309.646 kb on - strand, within DZA65_RS01405at 309.646 kb on - strand, within DZA65_RS01405at 309.646 kb on - strand, within DZA65_RS01405at 309.646 kb on - strand, within DZA65_RS01405at 309.758 kb on + strand, within DZA65_RS01405at 309.759 kb on - strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.879 kb on + strand, within DZA65_RS01405at 309.880 kb on - strand, within DZA65_RS01405at 309.880 kb on - strand, within DZA65_RS01405at 309.880 kb on - strand, within DZA65_RS01405at 309.880 kb on - strand, within DZA65_RS01405at 309.880 kb on - strand, within DZA65_RS01405at 309.880 kb on - strand, within DZA65_RS01405at 309.880 kb on - strand, within DZA65_RS01405at 309.881 kb on + strand, within DZA65_RS01405at 309.881 kb on + strand, within DZA65_RS01405at 309.881 kb on + strand, within DZA65_RS01405at 309.881 kb on + strand, within DZA65_RS01405at 309.901 kb on + strand, within DZA65_RS01405at 309.901 kb on + strand, within DZA65_RS01405at 309.902 kb on - strand, within DZA65_RS01405at 309.902 kb on - strand, within DZA65_RS01405at 309.902 kb on - strand, within DZA65_RS01405at 309.902 kb on - strand, within DZA65_RS01405at 309.975 kb on + strand, within DZA65_RS01405at 309.975 kb on + strand, within DZA65_RS01405at 309.975 kb on + strand, within DZA65_RS01405at 309.975 kb on + strand, within DZA65_RS01405at 309.975 kb on + strand, within DZA65_RS01405at 309.976 kb on - strand, within DZA65_RS01405at 309.976 kb on - strand, within DZA65_RS01405at 309.976 kb on - strand, within DZA65_RS01405at 309.978 kb on - strand, within DZA65_RS01405at 310.037 kb on + strand, within DZA65_RS01405at 310.120 kb on + strandat 310.120 kb on + strandat 310.120 kb on + strandat 310.120 kb on + strandat 310.120 kb on + strandat 310.121 kb on - strandat 310.121 kb on - strandat 310.121 kb on - strandat 310.124 kb on + strandat 310.124 kb on + strandat 310.124 kb on + strandat 310.125 kb on - strandat 310.125 kb on - strandat 310.125 kb on - strandat 310.125 kb on - strandat 310.154 kb on + strandat 310.239 kb on + strandat 310.239 kb on + strandat 310.239 kb on + strandat 310.239 kb on + strandat 310.239 kb on + strandat 310.239 kb on + strandat 310.239 kb on + strandat 310.239 kb on + strandat 310.239 kb on + strandat 310.239 kb on + strandat 310.239 kb on + strandat 310.239 kb on + strandat 310.240 kb on - strandat 310.240 kb on - strandat 310.240 kb on - strandat 310.240 kb on - strandat 310.240 kb on - strandat 310.240 kb on - strandat 310.240 kb on - strandat 310.240 kb on - strandat 310.240 kb on - strandat 310.268 kb on - strandat 310.268 kb on - strandat 310.268 kb on - strandat 310.272 kb on + strandat 310.272 kb on + strandat 310.272 kb on + strandat 310.273 kb on - strandat 310.273 kb on - strandat 310.273 kb on - strandat 310.293 kb on + strandat 310.343 kb on + strandat 310.344 kb on - strandat 310.429 kb on + strandat 310.430 kb on - strandat 310.467 kb on - strandat 310.467 kb on - strandat 310.509 kb on + strandat 311.603 kb on + strandat 311.603 kb on + strandat 311.604 kb on - strandat 311.604 kb on - strandat 311.656 kb on + strandat 311.656 kb on + strandat 311.656 kb on + strandat 311.656 kb on + strandat 311.656 kb on + strandat 311.656 kb on + strandat 311.657 kb on - strandat 311.657 kb on - strandat 311.657 kb on - strandat 311.673 kb on - strandat 311.685 kb on + strandat 311.698 kb on + strandat 311.708 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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309,612 + DZA65_RS01405 0.67 -1.8
309,612 + DZA65_RS01405 0.67 +0.9
309,612 + DZA65_RS01405 0.67 +0.3
309,612 + DZA65_RS01405 0.67 -0.7
309,612 + DZA65_RS01405 0.67 -1.7
309,613 - DZA65_RS01405 0.67 -2.1
309,645 + DZA65_RS01405 0.69 -1.5
309,645 + DZA65_RS01405 0.69 -2.7
309,645 + DZA65_RS01405 0.69 -0.1
309,645 + DZA65_RS01405 0.69 -1.1
309,645 + DZA65_RS01405 0.69 +0.2
309,645 + DZA65_RS01405 0.69 -1.1
309,645 + DZA65_RS01405 0.69 -0.8
309,646 - DZA65_RS01405 0.69 +0.2
309,646 - DZA65_RS01405 0.69 -0.7
309,646 - DZA65_RS01405 0.69 +0.9
309,646 - DZA65_RS01405 0.69 -2.1
309,646 - DZA65_RS01405 0.69 -1.7
309,646 - DZA65_RS01405 0.69 -1.3
309,646 - DZA65_RS01405 0.69 -1.1
309,646 - DZA65_RS01405 0.69 -1.0
309,646 - DZA65_RS01405 0.69 -2.3
309,646 - DZA65_RS01405 0.69 -1.5
309,758 + DZA65_RS01405 0.75 -0.6
309,759 - DZA65_RS01405 0.75 -0.1
309,879 + DZA65_RS01405 0.81 -0.5
309,879 + DZA65_RS01405 0.81 -0.4
309,879 + DZA65_RS01405 0.81 -2.5
309,879 + DZA65_RS01405 0.81 -2.3
309,879 + DZA65_RS01405 0.81 -0.1
309,879 + DZA65_RS01405 0.81 -1.6
309,879 + DZA65_RS01405 0.81 -1.1
309,879 + DZA65_RS01405 0.81 -0.6
309,879 + DZA65_RS01405 0.81 -1.1
309,879 + DZA65_RS01405 0.81 -0.4
309,879 + DZA65_RS01405 0.81 -0.1
309,879 + DZA65_RS01405 0.81 -0.3
309,879 + DZA65_RS01405 0.81 -2.0
309,879 + DZA65_RS01405 0.81 -2.0
309,879 + DZA65_RS01405 0.81 -2.5
309,879 + DZA65_RS01405 0.81 -2.3
309,880 - DZA65_RS01405 0.81 -2.6
309,880 - DZA65_RS01405 0.81 -0.6
309,880 - DZA65_RS01405 0.81 -0.9
309,880 - DZA65_RS01405 0.81 -0.7
309,880 - DZA65_RS01405 0.81 -1.1
309,880 - DZA65_RS01405 0.81 +0.3
309,880 - DZA65_RS01405 0.81 -0.1
309,881 + DZA65_RS01405 0.81 -1.1
309,881 + DZA65_RS01405 0.81 -1.5
309,881 + DZA65_RS01405 0.81 +0.0
309,881 + DZA65_RS01405 0.81 +0.4
309,901 + DZA65_RS01405 0.82 -1.6
309,901 + DZA65_RS01405 0.82 -2.0
309,902 - DZA65_RS01405 0.82 -1.5
309,902 - DZA65_RS01405 0.82 -1.6
309,902 - DZA65_RS01405 0.82 +0.6
309,902 - DZA65_RS01405 0.82 -2.5
309,975 + DZA65_RS01405 0.86 -0.1
309,975 + DZA65_RS01405 0.86 -1.7
309,975 + DZA65_RS01405 0.86 -0.9
309,975 + DZA65_RS01405 0.86 -0.1
309,975 + DZA65_RS01405 0.86 -1.6
309,976 - DZA65_RS01405 0.86 -2.4
309,976 - DZA65_RS01405 0.86 -0.6
309,976 - DZA65_RS01405 0.86 -0.5
309,978 - DZA65_RS01405 0.86 -3.1
310,037 + DZA65_RS01405 0.89 -1.5
310,120 + -0.1
310,120 + -0.7
310,120 + -0.8
310,120 + -1.1
310,120 + -0.7
310,121 - -1.5
310,121 - -2.2
310,121 - -1.7
310,124 + -1.1
310,124 + +0.9
310,124 + -0.7
310,125 - -1.6
310,125 - -2.3
310,125 - -0.7
310,125 - -1.7
310,154 + -2.6
310,239 + +0.6
310,239 + -0.0
310,239 + +2.4
310,239 + -2.8
310,239 + +0.3
310,239 + -0.1
310,239 + +0.3
310,239 + +0.0
310,239 + -2.7
310,239 + -1.0
310,239 + +1.9
310,239 + -1.1
310,240 - -1.7
310,240 - -0.0
310,240 - -1.1
310,240 - +1.3
310,240 - +1.9
310,240 - +0.4
310,240 - +0.4
310,240 - +0.2
310,240 - -0.1
310,268 - -0.8
310,268 - -1.7
310,268 - -1.1
310,272 + +0.3
310,272 + +0.1
310,272 + -0.3
310,273 - +0.6
310,273 - +1.4
310,273 - -0.4
310,293 + -0.5
310,343 + -0.2
310,344 - -0.3
310,429 + -1.0
310,430 - -2.2
310,467 - -1.7
310,467 - -3.1
310,509 + -2.1
311,603 + -0.2
311,603 + -0.3
311,604 - -0.1
311,604 - -1.0
311,656 + -0.1
311,656 + +1.9
311,656 + +0.0
311,656 + -1.1
311,656 + +1.1
311,656 + +0.3
311,657 - +2.7
311,657 - +0.4
311,657 - +0.5
311,673 - +1.3
311,685 + +1.3
311,698 + -0.1
311,708 + -0.3

Or see this region's nucleotide sequence