Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20615

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,445,578	-				-2.2
4,445,578	-				-1.2
4,445,596	-				-2.0
4,445,680	+		DZA65_RS20605	0.22	-1.0
4,445,680	+		DZA65_RS20605	0.22	-1.4
4,445,680	+		DZA65_RS20605	0.22	-0.4
4,445,680	+		DZA65_RS20605	0.22	-2.4
4,445,681	-		DZA65_RS20605	0.22	-3.5
4,445,681	-		DZA65_RS20605	0.22	-2.9
4,445,681	-		DZA65_RS20605	0.22	-1.2
4,445,681	-		DZA65_RS20605	0.22	-1.2
4,445,681	-		DZA65_RS20605	0.22	-0.5
4,445,681	-		DZA65_RS20605	0.22	-0.8
4,445,681	-		DZA65_RS20605	0.22	-0.4
4,445,681	-		DZA65_RS20605	0.22	-1.8
4,445,681	-		DZA65_RS20605	0.22	-0.2
4,445,681	-		DZA65_RS20605	0.22	-0.5
4,445,681	-		DZA65_RS20605	0.22	-1.4
4,445,785	+		DZA65_RS20605	0.40	-1.9
4,445,785	+		DZA65_RS20605	0.40	+1.2
4,445,785	+		DZA65_RS20605	0.40	+1.5
4,445,785	+		DZA65_RS20605	0.40	+1.3
4,445,786	-		DZA65_RS20605	0.40	-1.6
4,445,786	-		DZA65_RS20605	0.40	-0.8
4,445,786	-		DZA65_RS20605	0.40	-2.0
4,445,786	-		DZA65_RS20605	0.40	-2.5
4,445,866	+		DZA65_RS20605	0.54	-0.7
4,445,866	+		DZA65_RS20605	0.54	+0.3
4,445,866	+		DZA65_RS20605	0.54	-1.7
4,445,866	+		DZA65_RS20605	0.54	+0.2
4,445,867	-		DZA65_RS20605	0.54	-0.7
4,445,867	-		DZA65_RS20605	0.54	+0.2
4,445,867	-		DZA65_RS20605	0.54	-0.2
4,445,875	+		DZA65_RS20605	0.55	-1.8
4,445,876	-		DZA65_RS20605	0.56	+0.3
4,445,887	+		DZA65_RS20605	0.57	+0.7
4,445,887	+		DZA65_RS20605	0.57	-0.1
4,445,887	+		DZA65_RS20605	0.57	-1.7
4,445,887	+		DZA65_RS20605	0.57	-0.4
4,445,887	+		DZA65_RS20605	0.57	-1.4
4,445,887	+		DZA65_RS20605	0.57	-0.8
4,445,887	+		DZA65_RS20605	0.57	-0.8
4,445,887	+		DZA65_RS20605	0.57	-1.4
4,445,888	-		DZA65_RS20605	0.58	+0.2
4,445,888	-		DZA65_RS20605	0.58	-1.8
4,445,888	-		DZA65_RS20605	0.58	-1.2
4,445,888	-		DZA65_RS20605	0.58	-1.0
4,445,888	-		DZA65_RS20605	0.58	-1.8
4,445,888	-		DZA65_RS20605	0.58	-0.4
4,445,888	-		DZA65_RS20605	0.58	+0.0
4,445,888	-		DZA65_RS20605	0.58	+0.9
4,445,888	-		DZA65_RS20605	0.58	-0.8
4,445,924	+		DZA65_RS20605	0.64	-1.2
4,445,924	+		DZA65_RS20605	0.64	-1.7
4,445,924	+		DZA65_RS20605	0.64	+1.3
4,445,924	+		DZA65_RS20605	0.64	-0.4
4,445,924	+		DZA65_RS20605	0.64	-0.8
4,445,924	+		DZA65_RS20605	0.64	-2.8
4,445,925	-		DZA65_RS20605	0.64	-0.4
4,445,925	-		DZA65_RS20605	0.64	-0.5
4,445,933	+		DZA65_RS20605	0.65	-2.2
4,445,934	-		DZA65_RS20605	0.65	-1.9
4,445,934	-		DZA65_RS20605	0.65	-1.7
4,446,035	+		DZA65_RS20605	0.83	-0.7
4,446,035	+		DZA65_RS20605	0.83	+0.7
4,446,036	-		DZA65_RS20605	0.83	-0.8
4,446,073	+		DZA65_RS20605	0.89	-0.4
4,446,073	+		DZA65_RS20605	0.89	-2.0
4,446,073	+		DZA65_RS20605	0.89	-0.7
4,446,074	-		DZA65_RS20605	0.89	-0.8
4,446,074	-		DZA65_RS20605	0.89	+0.8
4,446,074	-		DZA65_RS20605	0.89	-0.4
4,446,074	-		DZA65_RS20605	0.89	-2.5
4,446,087	+				+1.0
4,446,087	+				-3.7
4,446,088	-				+0.2
4,446,088	-				-1.0
4,446,088	-				-1.7
4,446,091	+				+2.2
4,446,091	+				-1.0
4,446,091	+				-2.0
4,446,091	+				-0.2
4,446,091	+				+1.2
4,446,091	+				+1.2
4,446,091	+				-0.5
4,446,091	+				+0.8
4,446,091	+				+0.2
4,446,091	+				-0.7
4,446,091	+				-1.8
4,446,091	+				-3.2
4,446,091	+				-1.7
4,446,091	+				-0.4
4,446,091	+				+0.2
4,446,091	+				-2.0
4,446,092	-				-1.0
4,446,092	-				+0.7
4,446,092	-				-0.4
4,446,092	-				-3.2
4,446,092	-				-1.6
4,446,098	+				-1.5
4,446,099	-				+0.2
4,446,127	+				-0.4
4,446,128	-				-4.2
4,446,128	-				-0.8
4,446,138	+				-2.2
4,446,138	+				-0.8
4,446,138	+				-1.7
4,446,138	+				-1.2
4,446,138	+				-1.0
4,446,138	+				-1.2
4,446,139	-				-1.7
4,446,139	-				-2.2
4,446,139	-				+0.4
4,446,139	-				-1.8
4,446,139	-				-2.2
4,446,145	+				-2.4
4,446,146	-				-2.3
4,446,146	-				-0.8
4,446,196	+				-0.3
4,446,196	+				+0.7
4,446,196	+				-2.4
4,446,196	+				-1.3
4,446,196	+				+0.6
4,446,196	+				-1.4
4,446,197	-				+3.3
4,446,197	-				+1.5
4,446,197	-				-0.9
4,446,197	-				-2.9
4,446,197	-				-1.8
4,446,197	-				-1.2
4,446,197	-				-1.2
4,446,197	-				+2.6
4,446,238	+				-1.4
4,446,256	-				-0.8
4,446,434	-				+1.1
4,446,480	+				-2.2
4,446,480	+				-0.3
4,446,480	+				+0.2
4,446,480	+				-1.7
4,446,480	+				+0.9
4,446,480	+				-0.7
4,446,480	+				-1.7
4,446,480	+				+1.9
4,446,480	+				+1.4
4,446,480	+				+1.2
4,446,481	-				-1.8
4,446,481	-				-1.5
4,446,481	-				-1.4
4,446,481	-				+0.1
4,446,517	+				-1.0
4,446,575	+				-0.7
4,446,659	+				+1.0
4,446,659	+				+1.6
4,446,659	+				+1.0
4,446,659	+				-1.4
4,446,659	+				-1.0
4,446,660	-				-2.5
4,446,660	-				-0.8
4,446,660	-				+0.1
4,446,660	-				+0.2
4,446,660	-				-1.2
4,446,660	-				-1.4
4,446,660	-				-2.2
4,446,660	-				+2.2
4,446,906	-		DZA65_RS20615	0.22	+1.6
4,446,906	-		DZA65_RS20615	0.22	-0.8
4,446,911	+		DZA65_RS20615	0.22	-1.2
4,446,911	+		DZA65_RS20615	0.22	-0.7
4,446,911	+		DZA65_RS20615	0.22	-1.2
4,446,911	+		DZA65_RS20615	0.22	-1.2
4,446,911	+		DZA65_RS20615	0.22	-0.5
4,446,911	+		DZA65_RS20615	0.22	+1.2
4,446,911	+		DZA65_RS20615	0.22	-1.2
4,446,912	-				-2.3
4,446,912	-		DZA65_RS20615	0.22	+0.0
4,446,912	-		DZA65_RS20615	0.22	+0.2
4,446,912	-		DZA65_RS20615	0.22	+0.7
4,446,912	-		DZA65_RS20615	0.22	-0.4
4,446,912	-		DZA65_RS20615	0.22	-1.2
4,446,912	-		DZA65_RS20615	0.22	+0.6
4,446,979	+		DZA65_RS20615	0.26	-2.3
4,446,979	+		DZA65_RS20615	0.26	-1.4
4,446,982	+		DZA65_RS20615	0.26	+0.2
4,446,982	+		DZA65_RS20615	0.26	-0.5
4,446,982	+		DZA65_RS20615	0.26	-1.2
4,446,982	+		DZA65_RS20615	0.26	-3.1
4,446,982	+		DZA65_RS20615	0.26	+0.4
4,446,982	+		DZA65_RS20615	0.26	-1.3
4,446,982	+		DZA65_RS20615	0.26	+0.2
4,446,983	-		DZA65_RS20615	0.26	-1.7
4,446,983	-		DZA65_RS20615	0.26	+1.2
4,446,991	+		DZA65_RS20615	0.26	-0.1
4,447,055	+		DZA65_RS20615	0.30	-1.3
4,447,055	+		DZA65_RS20615	0.30	-2.0
4,447,055	+		DZA65_RS20615	0.30	-2.3
4,447,055	+		DZA65_RS20615	0.30	+4.5
4,447,055	+		DZA65_RS20615	0.30	+0.2
4,447,055	+		DZA65_RS20615	0.30	-0.2
4,447,055	+		DZA65_RS20615	0.30	-3.5
4,447,056	-		DZA65_RS20615	0.30	+1.3
4,447,056	-		DZA65_RS20615	0.30	-1.7
4,447,138	+		DZA65_RS20615	0.34	-2.2
4,447,138	+		DZA65_RS20615	0.34	+0.1
4,447,138	+		DZA65_RS20615	0.34	-1.2
4,447,139	-		DZA65_RS20615	0.34	-0.4
4,447,139	-		DZA65_RS20615	0.34	+1.9
4,447,139	-		DZA65_RS20615	0.34	-0.8
4,447,139	-		DZA65_RS20615	0.34	-1.5
4,447,187	+		DZA65_RS20615	0.37	+0.7
4,447,187	+		DZA65_RS20615	0.37	+2.0
4,447,187	+		DZA65_RS20615	0.37	-1.7
4,447,188	-		DZA65_RS20615	0.37	+2.6
4,447,188	-				-1.2
4,447,188	-		DZA65_RS20615	0.37	+0.2
4,447,188	-		DZA65_RS20615	0.37	-1.4
4,447,376	-		DZA65_RS20615	0.48	-0.7
4,447,376	-		DZA65_RS20615	0.48	+1.2
4,447,376	-		DZA65_RS20615	0.48	-0.1
4,447,393	+		DZA65_RS20615	0.49	-2.3
4,447,393	+		DZA65_RS20615	0.49	-1.4
4,447,394	-		DZA65_RS20615	0.49	+2.4
4,447,394	-		DZA65_RS20615	0.49	+1.7
4,447,394	-		DZA65_RS20615	0.49	-2.5
4,447,400	+		DZA65_RS20615	0.49	-2.8
4,447,400	+		DZA65_RS20615	0.49	-1.5
4,447,401	-		DZA65_RS20615	0.49	-0.5
4,447,401	-		DZA65_RS20615	0.49	+0.8
4,447,401	-		DZA65_RS20615	0.49	-1.2
4,447,401	-		DZA65_RS20615	0.49	+1.4
4,447,401	-		DZA65_RS20615	0.49	+0.5
4,447,401	-		DZA65_RS20615	0.49	-1.6
4,447,459	+		DZA65_RS20615	0.52	+2.8
4,447,460	-		DZA65_RS20615	0.52	+3.7
4,447,460	-		DZA65_RS20615	0.52	-0.3
4,447,590	-		DZA65_RS20615	0.59	+0.7
4,447,595	+		DZA65_RS20615	0.60	+1.3
4,447,595	+		DZA65_RS20615	0.60	-2.0
4,447,596	-		DZA65_RS20615	0.60	-1.2
4,447,596	-		DZA65_RS20615	0.60	+1.7
4,447,700	+		DZA65_RS20615	0.66	+0.2
4,447,727	-		DZA65_RS20615	0.67	-1.4
4,447,767	+				+1.9
4,447,767	+		DZA65_RS20615	0.69	-1.5
4,447,767	+		DZA65_RS20615	0.69	+2.9
4,447,767	+		DZA65_RS20615	0.69	-1.7
4,447,768	-		DZA65_RS20615	0.69	+0.2
4,447,768	-		DZA65_RS20615	0.69	+0.2
4,447,768	-		DZA65_RS20615	0.69	-0.4
4,447,768	-		DZA65_RS20615	0.69	-1.4
4,448,002	+		DZA65_RS20615	0.82	+2.2
4,448,002	+		DZA65_RS20615	0.82	+1.4
4,448,002	+		DZA65_RS20615	0.82	+3.0
4,448,002	+		DZA65_RS20615	0.82	-0.2
4,448,002	+		DZA65_RS20615	0.82	+1.5
4,448,064	-		DZA65_RS20615	0.86	-0.7
4,448,114	+		DZA65_RS20615	0.88	+0.8
4,448,114	+		DZA65_RS20615	0.88	-2.3
4,448,114	+		DZA65_RS20615	0.88	+0.7
4,448,115	-		DZA65_RS20615	0.89	-2.0
4,448,130	+		DZA65_RS20615	0.89	-1.3
4,448,130	+		DZA65_RS20615	0.89	-0.4
4,448,130	+		DZA65_RS20615	0.89	-0.2
4,448,130	+		DZA65_RS20615	0.89	-3.1
4,448,130	+		DZA65_RS20615	0.89	+0.2
4,448,130	+		DZA65_RS20615	0.89	-2.0
4,448,130	+		DZA65_RS20615	0.89	-1.0
4,448,131	-		DZA65_RS20615	0.89	-0.4
4,448,131	-		DZA65_RS20615	0.89	+0.4
4,448,218	+				+0.2
4,448,274	+				-0.2
4,448,274	+				-2.2
4,448,275	-				-2.0
4,448,368	-				+1.4
4,448,419	-		DZA65_RS20620	0.17	+0.1
4,448,446	+		DZA65_RS20620	0.22	+0.2
4,448,446	+		DZA65_RS20620	0.22	+1.3
4,448,480	+		DZA65_RS20620	0.28	-0.3
4,448,480	+		DZA65_RS20620	0.28	-0.2
4,448,480	+		DZA65_RS20620	0.28	+1.0
4,448,480	+		DZA65_RS20620	0.28	-2.7
4,448,481	-		DZA65_RS20620	0.28	-0.5
4,448,481	-		DZA65_RS20620	0.28	+4.2
4,448,481	-		DZA65_RS20620	0.28	+3.0
4,448,481	-		DZA65_RS20620	0.28	+0.5
4,448,481	-		DZA65_RS20620	0.28	-1.8
4,448,481	-		DZA65_RS20620	0.28	+0.4
4,448,483	+		DZA65_RS20620	0.29	-0.8
4,448,483	+		DZA65_RS20620	0.29	-0.8
4,448,483	+		DZA65_RS20620	0.29	-1.8
4,448,483	+		DZA65_RS20620	0.29	+1.6
4,448,483	+		DZA65_RS20620	0.29	-0.2
4,448,483	+		DZA65_RS20620	0.29	+0.2
4,448,483	+		DZA65_RS20620	0.29	+0.2
4,448,483	+		DZA65_RS20620	0.29	-1.7
4,448,483	+		DZA65_RS20620	0.29	+0.6
4,448,483	+		DZA65_RS20620	0.29	+0.6
4,448,483	+		DZA65_RS20620	0.29	-0.8
4,448,484	-		DZA65_RS20620	0.29	-0.8
4,448,484	-		DZA65_RS20620	0.29	-1.4
4,448,484	-		DZA65_RS20620	0.29	-1.8
4,448,484	-		DZA65_RS20620	0.29	+2.7
4,448,484	-		DZA65_RS20620	0.29	+1.7
4,448,484	-		DZA65_RS20620	0.29	+1.2
4,448,484	-		DZA65_RS20620	0.29	-1.7
4,448,484	-		DZA65_RS20620	0.29	+2.8
4,448,484	-		DZA65_RS20620	0.29	-1.7
4,448,484	-		DZA65_RS20620	0.29	-1.2
4,448,565	+		DZA65_RS20620	0.44	-0.4
4,448,566	-		DZA65_RS20620	0.44	-1.8
4,448,658	+		DZA65_RS20620	0.61	-1.8
4,448,658	+		DZA65_RS20620	0.61	-0.3
4,448,658	+		DZA65_RS20620	0.61	+0.9
4,448,658	+		DZA65_RS20620	0.61	+0.2
4,448,658	+		DZA65_RS20620	0.61	+0.2
4,448,658	+		DZA65_RS20620	0.61	+2.6
4,448,658	+		DZA65_RS20620	0.61	+0.2
4,448,658	+		DZA65_RS20620	0.61	-0.5
4,448,658	+		DZA65_RS20620	0.61	-2.3
4,448,658	+		DZA65_RS20620	0.61	+1.4
4,448,658	+		DZA65_RS20620	0.61	-0.8
4,448,658	+		DZA65_RS20620	0.61	+1.2
4,448,658	+		DZA65_RS20620	0.61	+0.3
4,448,658	+		DZA65_RS20620	0.61	-0.4
4,448,658	+		DZA65_RS20620	0.61	-0.2
4,448,658	+		DZA65_RS20620	0.61	-2.4
4,448,658	+		DZA65_RS20620	0.61	-1.4
4,448,658	+		DZA65_RS20620	0.61	-1.8
4,448,659	-		DZA65_RS20620	0.61	-2.2
4,448,659	-		DZA65_RS20620	0.61	-1.2
4,448,659	-		DZA65_RS20620	0.61	-2.0
4,448,659	-		DZA65_RS20620	0.61	+0.9
4,448,659	-		DZA65_RS20620	0.61	-0.0
4,448,659	-		DZA65_RS20620	0.61	-2.4
4,448,659	-		DZA65_RS20620	0.61	-1.7
4,448,659	-		DZA65_RS20620	0.61	-0.4
4,448,659	-		DZA65_RS20620	0.61	-2.8
4,448,659	-		DZA65_RS20620	0.61	-0.2
4,448,659	-		DZA65_RS20620	0.61	-2.4
4,448,659	-		DZA65_RS20620	0.61	+1.5
4,448,659	-		DZA65_RS20620	0.61	+2.5
4,448,659	-		DZA65_RS20620	0.61	-0.4
4,448,659	-		DZA65_RS20620	0.61	-2.9
4,448,659	-		DZA65_RS20620	0.61	-0.4
4,448,659	-		DZA65_RS20620	0.61	-0.8
4,448,659	-		DZA65_RS20620	0.61	-2.8
4,448,659	-		DZA65_RS20620	0.61	+2.2
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4,448,662	+		DZA65_RS20620	0.61	-1.2
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4,448,663	-		DZA65_RS20620	0.61	-1.6
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4,448,663	-		DZA65_RS20620	0.61	-0.5
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4,448,665	-		DZA65_RS20620	0.62	+0.6
4,448,665	-		DZA65_RS20620	0.62	-1.8
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4,448,682	-		DZA65_RS20620	0.65	-0.0
4,448,686	+		DZA65_RS20620	0.66	+1.2
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4,448,801	+				-1.2
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4,448,805	-		DZA65_RS20620	0.87	-2.8
4,448,805	-		DZA65_RS20620	0.87	+2.1
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4,448,934	+				-0.8
4,448,934	+				-2.0
4,448,934	+				+1.2
4,448,934	+				+3.1
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4,448,934	+				-0.6
4,448,934	+				+0.9
4,448,934	+				-0.4
4,448,934	+				-1.9
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4,448,974	+				+3.3
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4,448,999	+				+1.0
4,449,000	-				-2.4
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4,449,246	+		DZA65_RS20625	0.13	-1.8
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