Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20265

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,393,714	+		DZA65_RS20260	0.49	-0.5
4,393,714	+		DZA65_RS20260	0.49	-1.4
4,393,715	-		DZA65_RS20260	0.49	-0.2
4,393,723	+		DZA65_RS20260	0.49	-1.4
4,393,726	+		DZA65_RS20260	0.49	-0.4
4,393,727	-		DZA65_RS20260	0.49	-0.5
4,393,727	-		DZA65_RS20260	0.49	+1.4
4,393,727	-		DZA65_RS20260	0.49	+0.1
4,393,727	-		DZA65_RS20260	0.49	+1.2
4,393,727	-		DZA65_RS20260	0.49	-0.8
4,393,727	-		DZA65_RS20260	0.49	-1.4
4,393,766	-		DZA65_RS20260	0.52	-0.8
4,393,766	-		DZA65_RS20260	0.52	+2.5
4,393,766	-		DZA65_RS20260	0.52	+2.4
4,393,785	-		DZA65_RS20260	0.53	-0.6
4,393,837	+		DZA65_RS20260	0.56	+3.2
4,393,837	+		DZA65_RS20260	0.56	-0.2
4,393,849	+		DZA65_RS20260	0.56	-0.2
4,393,849	+		DZA65_RS20260	0.56	+0.2
4,393,849	+		DZA65_RS20260	0.56	-1.4
4,393,849	+		DZA65_RS20260	0.56	+0.7
4,393,850	-		DZA65_RS20260	0.56	-2.3
4,393,850	-		DZA65_RS20260	0.56	-2.0
4,393,850	-		DZA65_RS20260	0.56	+2.2
4,393,850	-		DZA65_RS20260	0.56	-1.8
4,393,850	-		DZA65_RS20260	0.56	+0.2
4,393,850	-		DZA65_RS20260	0.56	+2.2
4,393,904	+		DZA65_RS20260	0.59	-0.4
4,393,905	-		DZA65_RS20260	0.60	-2.0
4,394,004	-		DZA65_RS20260	0.65	+0.7
4,394,092	+		DZA65_RS20260	0.70	+0.2
4,394,093	-		DZA65_RS20260	0.70	-0.3
4,394,093	-		DZA65_RS20260	0.70	+2.5
4,394,093	-		DZA65_RS20260	0.70	-0.4
4,394,188	+		DZA65_RS20260	0.76	+2.2
4,394,296	+		DZA65_RS20260	0.82	+0.7
4,394,296	+		DZA65_RS20260	0.82	+0.5
4,394,296	+		DZA65_RS20260	0.82	-0.8
4,394,297	-		DZA65_RS20260	0.82	+0.9
4,394,297	-		DZA65_RS20260	0.82	-1.4
4,394,297	-		DZA65_RS20260	0.82	+1.4
4,394,297	-		DZA65_RS20260	0.82	+0.6
4,394,358	-		DZA65_RS20260	0.85	+1.9
4,394,358	-		DZA65_RS20260	0.85	+1.5
4,394,359	+		DZA65_RS20260	0.85	-0.8
4,394,359	+		DZA65_RS20260	0.85	+1.6
4,394,359	+		DZA65_RS20260	0.85	+1.4
4,394,359	+		DZA65_RS20260	0.85	+0.4
4,394,359	+		DZA65_RS20260	0.85	+0.5
4,394,359	+		DZA65_RS20260	0.85	-0.5
4,394,359	+		DZA65_RS20260	0.85	+0.6
4,394,360	-		DZA65_RS20260	0.85	-2.0
4,394,360	-		DZA65_RS20260	0.85	+0.4
4,394,360	-		DZA65_RS20260	0.85	-0.8
4,394,360	-		DZA65_RS20260	0.85	+0.7
4,394,360	-		DZA65_RS20260	0.85	+1.6
4,394,360	-		DZA65_RS20260	0.85	-2.6
4,394,360	-		DZA65_RS20260	0.85	-0.4
4,394,360	-		DZA65_RS20260	0.85	-3.1
4,394,395	+		DZA65_RS20260	0.87	-2.9
4,394,455	+				-1.2
4,394,455	+				+1.7
4,394,455	+				+1.7
4,394,455	+				-1.4
4,394,455	+				+1.2
4,394,456	-				-0.4
4,394,456	-				+2.0
4,394,456	-				+1.7
4,394,456	-				+0.6
4,394,647	+				+2.6
4,394,647	+				+0.9
4,394,647	+				-1.2
4,394,776	+				-1.2
4,394,815	+				-0.2
4,394,815	+				-1.4
4,394,815	+				-1.6
4,394,815	+				+0.9
4,394,816	-				-1.1
4,394,816	-				+0.2
4,394,816	-				+0.6
4,394,825	+		DZA65_RS20265	0.10	-2.4
4,394,826	-		DZA65_RS20265	0.10	+2.2
4,394,863	+		DZA65_RS20265	0.13	-2.4
4,394,863	+		DZA65_RS20265	0.13	-2.3
4,394,863	+		DZA65_RS20265	0.13	+1.8
4,394,864	-		DZA65_RS20265	0.13	+1.2
4,394,864	-		DZA65_RS20265	0.13	-1.6
4,394,864	-		DZA65_RS20265	0.13	-0.4
4,394,864	-		DZA65_RS20265	0.13	+0.2
4,394,864	-		DZA65_RS20265	0.13	+0.7
4,394,890	+		DZA65_RS20265	0.15	-1.4
4,394,890	+		DZA65_RS20265	0.15	+1.2
4,394,890	+		DZA65_RS20265	0.15	+1.2
4,394,890	+		DZA65_RS20265	0.15	-0.4
4,394,890	+		DZA65_RS20265	0.15	-0.1
4,394,890	+		DZA65_RS20265	0.15	-0.1
4,394,890	+		DZA65_RS20265	0.15	-2.0
4,394,890	+		DZA65_RS20265	0.15	-0.8
4,394,891	-		DZA65_RS20265	0.15	+0.3
4,394,891	-		DZA65_RS20265	0.15	+1.2
4,394,891	-		DZA65_RS20265	0.15	+0.6
4,394,891	-		DZA65_RS20265	0.15	-0.7
4,394,956	+		DZA65_RS20265	0.20	-1.8
4,394,956	+		DZA65_RS20265	0.20	-0.9
4,394,956	+		DZA65_RS20265	0.20	-2.0
4,394,956	+		DZA65_RS20265	0.20	+1.5
4,394,956	+		DZA65_RS20265	0.20	-0.1
4,394,957	-		DZA65_RS20265	0.20	-1.8
4,394,957	-		DZA65_RS20265	0.20	-1.6
4,394,962	+		DZA65_RS20265	0.21	+0.6
4,394,962	+		DZA65_RS20265	0.21	-1.2
4,394,963	-		DZA65_RS20265	0.21	+2.0
4,394,963	-		DZA65_RS20265	0.21	+2.2
4,394,963	-		DZA65_RS20265	0.21	-0.8
4,394,963	-		DZA65_RS20265	0.21	-3.5
4,395,049	+		DZA65_RS20265	0.27	+0.9
4,395,050	-		DZA65_RS20265	0.27	+1.5
4,395,050	-		DZA65_RS20265	0.27	-1.8
4,395,208	+		DZA65_RS20265	0.40	+3.8
4,395,208	+		DZA65_RS20265	0.40	+0.5
4,395,253	+		DZA65_RS20265	0.43	-0.8
4,395,254	-		DZA65_RS20265	0.43	+1.9
4,395,254	-		DZA65_RS20265	0.43	-1.4
4,395,254	-		DZA65_RS20265	0.43	+0.9
4,395,254	-		DZA65_RS20265	0.43	+0.7
4,395,254	-		DZA65_RS20265	0.43	-1.2
4,395,254	-		DZA65_RS20265	0.43	-0.8
4,395,254	-		DZA65_RS20265	0.43	-0.4
4,395,254	-		DZA65_RS20265	0.43	-0.4
4,395,405	-		DZA65_RS20265	0.55	+0.2
4,395,547	+		DZA65_RS20265	0.65	+1.7
4,395,557	-		DZA65_RS20265	0.66	-0.8
4,395,617	+		DZA65_RS20265	0.71	+2.1
4,395,617	+		DZA65_RS20265	0.71	-2.6
4,395,618	-		DZA65_RS20265	0.71	+0.2
4,395,618	-		DZA65_RS20265	0.71	+0.2
4,395,618	-		DZA65_RS20265	0.71	+0.1
4,395,618	-		DZA65_RS20265	0.71	+1.2
4,395,618	-		DZA65_RS20265	0.71	-2.7
4,395,618	-		DZA65_RS20265	0.71	+2.9
4,395,626	+		DZA65_RS20265	0.71	-0.2
4,395,626	+		DZA65_RS20265	0.71	-0.8
4,395,626	+		DZA65_RS20265	0.71	+0.6
4,395,626	+		DZA65_RS20265	0.71	-1.0
4,395,626	+		DZA65_RS20265	0.71	-1.4
4,395,627	-		DZA65_RS20265	0.72	+0.0
4,395,653	+		DZA65_RS20265	0.74	+0.6
4,395,662	-		DZA65_RS20265	0.74	+1.2
4,395,679	+		DZA65_RS20265	0.76	-1.2
4,395,679	+		DZA65_RS20265	0.76	+0.1
4,395,730	+		DZA65_RS20265	0.79	+0.2
4,395,730	+		DZA65_RS20265	0.79	-0.8
4,395,730	+		DZA65_RS20265	0.79	-0.8
4,395,730	+		DZA65_RS20265	0.79	-1.6
4,395,730	+		DZA65_RS20265	0.79	-1.4
4,395,731	-		DZA65_RS20265	0.80	-1.4
4,395,731	-		DZA65_RS20265	0.80	+2.0
4,395,731	-		DZA65_RS20265	0.80	-0.6
4,395,731	-		DZA65_RS20265	0.80	-1.4
4,395,731	-		DZA65_RS20265	0.80	-2.7
4,395,731	-		DZA65_RS20265	0.80	+1.2
4,395,731	-		DZA65_RS20265	0.80	+0.6
4,395,731	-		DZA65_RS20265	0.80	+1.1
4,395,731	-		DZA65_RS20265	0.80	+1.4
4,395,731	-		DZA65_RS20265	0.80	+0.8
4,395,731	-		DZA65_RS20265	0.80	+1.2
4,395,731	-		DZA65_RS20265	0.80	-1.8
4,395,731	-		DZA65_RS20265	0.80	-1.4
4,395,797	+		DZA65_RS20265	0.85	+1.6
4,395,798	-		DZA65_RS20265	0.85	-1.6
4,395,802	+		DZA65_RS20265	0.85	-0.3
4,395,803	-		DZA65_RS20265	0.85	+0.6
4,395,803	-		DZA65_RS20265	0.85	+1.6
4,395,803	-		DZA65_RS20265	0.85	-2.5
4,395,803	-		DZA65_RS20265	0.85	+1.7
4,395,866	+		DZA65_RS20265	0.90	-2.5
4,395,866	+		DZA65_RS20265	0.90	-1.6
4,395,866	+		DZA65_RS20265	0.90	+0.2
4,395,867	-		DZA65_RS20265	0.90	-0.3
4,395,867	-		DZA65_RS20265	0.90	+0.4
4,395,984	-				-0.8
4,395,984	-				+0.6
4,395,998	+				-0.4
4,396,023	+				+0.5
4,396,023	+				+0.2
4,396,024	-				-0.8
4,396,024	-				+1.7
4,396,031	+				-0.4
4,396,031	+				-0.4
4,396,031	+				-1.2
4,396,031	+				-0.4
4,396,031	+				-1.4
4,396,031	+				-0.1
4,396,032	-				+0.5
4,396,032	-				-1.8
4,396,032	-				-1.8
4,396,032	-				-3.3
4,396,032	-				-0.6
4,396,032	-				+3.3
4,396,032	-				-0.8
4,396,032	-				+1.2
4,396,032	-				+0.5
4,396,032	-				+0.4
4,396,032	-				-2.9
4,396,252	+		DZA65_RS20270	0.14	-2.2
4,396,252	+		DZA65_RS20270	0.14	+0.2
4,396,253	-		DZA65_RS20270	0.14	+2.2
4,396,258	+		DZA65_RS20270	0.15	+0.6
4,396,258	+		DZA65_RS20270	0.15	-0.1
4,396,259	-		DZA65_RS20270	0.15	+0.7
4,396,259	-		DZA65_RS20270	0.15	-1.4
4,396,259	-		DZA65_RS20270	0.15	+1.4
4,396,259	-		DZA65_RS20270	0.15	-1.4
4,396,259	-		DZA65_RS20270	0.15	-0.8
4,396,300	-		DZA65_RS20270	0.17	-0.8
4,396,300	-		DZA65_RS20270	0.17	-0.8
4,396,341	+		DZA65_RS20270	0.20	-1.3
4,396,341	+		DZA65_RS20270	0.20	+1.0
4,396,341	+		DZA65_RS20270	0.20	+2.0
4,396,341	+		DZA65_RS20270	0.20	+0.8
4,396,341	+		DZA65_RS20270	0.20	-0.4
4,396,341	+		DZA65_RS20270	0.20	-1.7
4,396,342	-		DZA65_RS20270	0.20	+1.2
4,396,342	-		DZA65_RS20270	0.20	-0.8
4,396,342	-		DZA65_RS20270	0.20	-0.5
4,396,342	-		DZA65_RS20270	0.20	-0.5
4,396,342	-		DZA65_RS20270	0.20	+0.2
4,396,450	+		DZA65_RS20270	0.27	+1.0
4,396,450	+		DZA65_RS20270	0.27	+0.7
4,396,450	+		DZA65_RS20270	0.27	+1.9
4,396,450	+		DZA65_RS20270	0.27	-1.2
4,396,451	-		DZA65_RS20270	0.27	+0.3
4,396,451	-		DZA65_RS20270	0.27	+2.2
4,396,451	-		DZA65_RS20270	0.27	+1.7
4,396,451	-		DZA65_RS20270	0.27	+0.2
4,396,451	-		DZA65_RS20270	0.27	-0.9
4,396,451	-		DZA65_RS20270	0.27	+0.5
4,396,692	+		DZA65_RS20270	0.42	-0.3
4,396,692	+		DZA65_RS20270	0.42	+0.4
4,396,693	-		DZA65_RS20270	0.42	-1.8
4,396,776	+		DZA65_RS20270	0.47	-0.3
4,396,777	-		DZA65_RS20270	0.47	+0.6
4,396,777	-		DZA65_RS20270	0.47	-0.2
4,396,777	-		DZA65_RS20270	0.47	-1.4
4,396,781	-		DZA65_RS20270	0.47	-3.4
4,396,932	+		DZA65_RS20270	0.57	+0.2
4,396,932	+		DZA65_RS20270	0.57	-0.8
4,396,932	+		DZA65_RS20270	0.57	+2.5
4,396,932	+		DZA65_RS20270	0.57	-0.8
4,396,932	+		DZA65_RS20270	0.57	-1.4
4,396,933	-		DZA65_RS20270	0.57	+2.0
4,396,940	+		DZA65_RS20270	0.57	-1.8
4,396,940	+		DZA65_RS20270	0.57	+1.1
4,396,940	+		DZA65_RS20270	0.57	+2.5
4,396,941	-		DZA65_RS20270	0.57	-1.8
4,396,941	-		DZA65_RS20270	0.57	+1.2
4,396,989	+		DZA65_RS20270	0.60	-1.8
4,396,990	-		DZA65_RS20270	0.61	-0.2
4,396,990	-		DZA65_RS20270	0.61	-1.8
4,396,995	+		DZA65_RS20270	0.61	+0.9
4,396,996	-		DZA65_RS20270	0.61	+0.7