Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20180

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,372,497	+				-1.2
4,372,498	-				+0.4
4,372,498	-				-2.9
4,372,501	+				-0.1
4,372,501	+				-1.6
4,372,501	+				+1.4
4,372,502	-				-0.8
4,372,502	-				+2.2
4,372,502	-				-1.4
4,372,502	-				+0.2
4,372,502	-				+1.2
4,372,512	+				+0.5
4,372,512	+				+1.0
4,372,513	-				-1.6
4,372,518	+				-3.0
4,372,519	-				+3.0
4,372,523	+				-2.6
4,372,524	-				+0.5
4,372,542	+				+0.7
4,372,543	-				+0.2
4,372,589	+				-0.6
4,372,589	+				-1.4
4,372,589	+				-1.4
4,372,590	-				-1.4
4,372,609	+				+2.2
4,372,610	-				+1.2
4,372,610	-				+0.6
4,372,610	-				+2.0
4,372,639	-				+1.6
4,372,652	+				+1.2
4,372,652	+				-0.4
4,372,698	+				-2.4
4,372,699	-				-1.2
4,372,699	-				+1.2
4,372,699	-				+0.9
4,372,708	+				-1.4
4,372,710	+				+0.4
4,372,753	+				+0.2
4,372,754	-				-1.8
4,372,758	-				+1.4
4,372,758	-				-0.3
4,372,810	+				-0.6
4,372,811	-				-0.8
4,372,862	+				+0.4
4,372,862	+				+0.2
4,372,863	-				+1.6
4,372,894	-				-0.4
4,372,905	-				-0.4
4,372,935	-				-3.2
4,373,000	-				+0.6
4,373,064	+		DZA65_RS20180	0.10	-0.8
4,373,065	-		DZA65_RS20180	0.10	+1.0
4,373,126	+		DZA65_RS20180	0.14	+0.6
4,373,126	+		DZA65_RS20180	0.14	-0.2
4,373,126	+		DZA65_RS20180	0.14	+2.3
4,373,126	+		DZA65_RS20180	0.14	-1.4
4,373,126	+		DZA65_RS20180	0.14	-3.4
4,373,126	+		DZA65_RS20180	0.14	-1.2
4,373,126	+		DZA65_RS20180	0.14	+3.4
4,373,126	+		DZA65_RS20180	0.14	-1.0
4,373,127	-		DZA65_RS20180	0.14	-0.4
4,373,127	-		DZA65_RS20180	0.14	+1.4
4,373,127	-		DZA65_RS20180	0.14	+2.0
4,373,127	-		DZA65_RS20180	0.14	-0.4
4,373,127	-		DZA65_RS20180	0.14	+1.6
4,373,127	-		DZA65_RS20180	0.14	-1.6
4,373,127	-		DZA65_RS20180	0.14	-0.8
4,373,127	-		DZA65_RS20180	0.14	-0.3
4,373,127	-		DZA65_RS20180	0.14	+1.5
4,373,127	-		DZA65_RS20180	0.14	-1.2
4,373,127	-		DZA65_RS20180	0.14	+1.5
4,373,129	+		DZA65_RS20180	0.14	+0.8
4,373,129	+		DZA65_RS20180	0.14	+2.2
4,373,129	+		DZA65_RS20180	0.14	-1.2
4,373,129	+		DZA65_RS20180	0.14	+0.3
4,373,129	+		DZA65_RS20180	0.14	-1.4
4,373,130	-		DZA65_RS20180	0.14	-0.8
4,373,130	-		DZA65_RS20180	0.14	-0.8
4,373,130	-		DZA65_RS20180	0.14	-0.6
4,373,130	-		DZA65_RS20180	0.14	+0.9
4,373,130	-		DZA65_RS20180	0.14	-0.8
4,373,130	-		DZA65_RS20180	0.14	-1.8
4,373,355	-		DZA65_RS20180	0.26	-1.8
4,373,361	+		DZA65_RS20180	0.27	-1.6
4,373,406	+		DZA65_RS20180	0.29	-3.4
4,373,406	+		DZA65_RS20180	0.29	+2.3
4,373,406	+		DZA65_RS20180	0.29	+0.8
4,373,406	+		DZA65_RS20180	0.29	-0.8
4,373,406	+		DZA65_RS20180	0.29	-0.2
4,373,406	+		DZA65_RS20180	0.29	-3.1
4,373,407	-		DZA65_RS20180	0.29	-0.2
4,373,407	-		DZA65_RS20180	0.29	+0.3
4,373,407	-		DZA65_RS20180	0.29	-1.4
4,373,407	-		DZA65_RS20180	0.29	-0.2
4,373,407	-		DZA65_RS20180	0.29	-0.4
4,373,407	-		DZA65_RS20180	0.29	+1.5
4,373,480	-		DZA65_RS20180	0.33	-0.7
4,373,485	+		DZA65_RS20180	0.34	+1.2
4,373,485	+		DZA65_RS20180	0.34	-1.8
4,373,485	+		DZA65_RS20180	0.34	+1.5
4,373,486	-		DZA65_RS20180	0.34	-1.3
4,373,486	-		DZA65_RS20180	0.34	-0.4
4,373,486	-		DZA65_RS20180	0.34	+1.7
4,373,486	-		DZA65_RS20180	0.34	-0.3
4,373,486	-		DZA65_RS20180	0.34	-0.8
4,373,680	+		DZA65_RS20180	0.44	-0.2
4,373,725	+		DZA65_RS20180	0.47	+3.2
4,373,725	+		DZA65_RS20180	0.47	+0.4
4,373,725	+		DZA65_RS20180	0.47	-1.1
4,373,725	+		DZA65_RS20180	0.47	-1.2
4,373,725	+		DZA65_RS20180	0.47	-0.8
4,373,726	-		DZA65_RS20180	0.47	+1.5
4,373,726	-		DZA65_RS20180	0.47	-0.2
4,373,726	-		DZA65_RS20180	0.47	+0.7
4,373,726	-		DZA65_RS20180	0.47	-3.2
4,373,726	-		DZA65_RS20180	0.47	-1.2
4,373,790	+		DZA65_RS20180	0.51	+1.0
4,373,791	-		DZA65_RS20180	0.51	+0.0
4,373,791	-		DZA65_RS20180	0.51	+1.3
4,373,795	+		DZA65_RS20180	0.51	-1.6
4,373,795	+		DZA65_RS20180	0.51	-1.2
4,373,795	+		DZA65_RS20180	0.51	-1.2
4,373,795	+		DZA65_RS20180	0.51	-0.8
4,373,795	+		DZA65_RS20180	0.51	+0.0
4,373,795	+		DZA65_RS20180	0.51	-1.6
4,373,795	+		DZA65_RS20180	0.51	+0.2
4,373,795	+		DZA65_RS20180	0.51	-0.8
4,373,795	+		DZA65_RS20180	0.51	-1.2
4,373,796	-		DZA65_RS20180	0.51	+0.8
4,373,796	-		DZA65_RS20180	0.51	-2.5
4,373,796	-		DZA65_RS20180	0.51	-0.6
4,373,796	-		DZA65_RS20180	0.51	+1.9
4,373,796	-		DZA65_RS20180	0.51	-0.8
4,373,796	-		DZA65_RS20180	0.51	-2.4
4,373,800	-		DZA65_RS20180	0.51	+1.6
4,373,821	+		DZA65_RS20180	0.52	-0.6
4,373,822	-		DZA65_RS20180	0.52	+0.9
4,373,855	+		DZA65_RS20180	0.54	+0.6
4,373,855	+		DZA65_RS20180	0.54	-1.8
4,373,856	-		DZA65_RS20180	0.54	-0.8
4,373,896	+		DZA65_RS20180	0.56	-1.2
4,373,896	+		DZA65_RS20180	0.56	-1.8
4,373,896	+		DZA65_RS20180	0.56	-0.4
4,373,896	+		DZA65_RS20180	0.56	+0.5
4,373,896	+		DZA65_RS20180	0.56	+1.2
4,373,896	+		DZA65_RS20180	0.56	+2.3
4,373,897	-		DZA65_RS20180	0.56	-1.8
4,373,897	-		DZA65_RS20180	0.56	+0.0
4,373,897	-		DZA65_RS20180	0.56	+3.0
4,373,897	-		DZA65_RS20180	0.56	+0.7
4,373,897	-		DZA65_RS20180	0.56	-1.4
4,373,897	-		DZA65_RS20180	0.56	-0.3
4,373,950	+		DZA65_RS20180	0.59	-2.0
4,373,950	+		DZA65_RS20180	0.59	-1.6
4,373,950	+		DZA65_RS20180	0.59	+1.0
4,373,950	+		DZA65_RS20180	0.59	+1.6
4,373,950	+		DZA65_RS20180	0.59	+0.4
4,373,951	-		DZA65_RS20180	0.59	+1.2
4,373,951	-		DZA65_RS20180	0.59	+1.9
4,373,951	-		DZA65_RS20180	0.59	+2.6
4,373,951	-		DZA65_RS20180	0.59	+1.4
4,373,956	-		DZA65_RS20180	0.60	+1.7
4,374,276	+		DZA65_RS20180	0.78	-1.6
4,374,277	-		DZA65_RS20180	0.78	-0.4
4,374,280	+		DZA65_RS20180	0.78	+1.7
4,374,280	+		DZA65_RS20180	0.78	-1.2
4,374,280	+		DZA65_RS20180	0.78	-0.4
4,374,281	-		DZA65_RS20180	0.78	-2.9
4,374,281	-		DZA65_RS20180	0.78	-0.3
4,374,281	-		DZA65_RS20180	0.78	-0.7
4,374,281	-		DZA65_RS20180	0.78	-1.6
4,374,374	+		DZA65_RS20180	0.83	+2.7
4,374,374	+		DZA65_RS20180	0.83	-0.1
4,374,374	+		DZA65_RS20180	0.83	-0.6
4,374,375	-		DZA65_RS20180	0.83	+0.1
4,374,394	+		DZA65_RS20180	0.84	-0.4
4,374,394	+		DZA65_RS20180	0.84	+2.5
4,374,395	-		DZA65_RS20180	0.84	-0.5
4,374,395	-		DZA65_RS20180	0.84	+0.2
4,374,395	-		DZA65_RS20180	0.84	-1.1
4,374,395	-		DZA65_RS20180	0.84	-1.4
4,374,395	-		DZA65_RS20180	0.84	-0.6
4,374,435	+		DZA65_RS20180	0.86	+0.3
4,374,435	+		DZA65_RS20180	0.86	+1.2
4,374,435	+		DZA65_RS20180	0.86	+1.7
4,374,435	+		DZA65_RS20180	0.86	-0.4
4,374,435	+		DZA65_RS20180	0.86	-0.4
4,374,435	+		DZA65_RS20180	0.86	+0.7
4,374,435	+		DZA65_RS20180	0.86	-1.8
4,374,436	-		DZA65_RS20180	0.86	+1.4
4,374,436	-		DZA65_RS20180	0.86	+0.2
4,374,436	-		DZA65_RS20180	0.86	+0.2
4,374,436	-		DZA65_RS20180	0.86	-0.7
4,374,547	+				-2.3
4,374,547	+				+0.2
4,374,547	+				+1.2
4,374,548	-				+1.5
4,374,548	-				+2.3
4,374,548	-				-0.3
4,374,548	-				-1.2
4,374,548	-				+1.2
4,374,577	+				-0.8
4,374,577	+				-1.2
4,374,577	+				+0.0
4,374,622	+				-0.4
4,374,623	-				+2.2
4,374,679	+				+1.3
4,374,679	+				-1.4
4,374,680	-				+1.7
4,374,712	+				-1.2
4,374,749	+		DZA65_RS20185	0.11	+0.2
4,374,749	+		DZA65_RS20185	0.11	+3.2
4,374,749	+		DZA65_RS20185	0.11	+0.2
4,374,749	+		DZA65_RS20185	0.11	-0.8
4,374,749	+		DZA65_RS20185	0.11	-0.2
4,374,749	+		DZA65_RS20185	0.11	-0.4
4,374,749	+		DZA65_RS20185	0.11	-1.2
4,374,749	+		DZA65_RS20185	0.11	-2.3
4,374,749	+		DZA65_RS20185	0.11	-1.4
4,374,749	+		DZA65_RS20185	0.11	+1.1
4,374,750	-		DZA65_RS20185	0.11	-1.6
4,374,750	-		DZA65_RS20185	0.11	+0.0
4,374,750	-		DZA65_RS20185	0.11	+2.7
4,374,750	-		DZA65_RS20185	0.11	-1.4
4,374,750	-		DZA65_RS20185	0.11	+1.0
4,374,750	-		DZA65_RS20185	0.11	-2.7
4,374,761	+		DZA65_RS20185	0.12	+0.7
4,374,761	+		DZA65_RS20185	0.12	-0.4
4,374,761	+		DZA65_RS20185	0.12	+4.6
4,374,762	-		DZA65_RS20185	0.12	-2.3
4,374,762	-		DZA65_RS20185	0.12	+0.2
4,374,762	-		DZA65_RS20185	0.12	+0.7
4,374,763	+		DZA65_RS20185	0.13	-0.6
4,374,764	-		DZA65_RS20185	0.13	-1.2
4,374,797	+		DZA65_RS20185	0.17	+1.2
4,374,797	+		DZA65_RS20185	0.17	+0.6
4,374,798	-		DZA65_RS20185	0.17	+0.9
4,374,798	-		DZA65_RS20185	0.17	-1.2
4,374,831	-		DZA65_RS20185	0.22	+0.2
4,374,904	+		DZA65_RS20185	0.32	+1.4
4,374,904	+		DZA65_RS20185	0.32	-1.8
4,374,904	+		DZA65_RS20185	0.32	+1.3
4,374,905	-		DZA65_RS20185	0.32	-1.8
4,374,905	-		DZA65_RS20185	0.32	-2.4
4,374,905	-		DZA65_RS20185	0.32	-0.0
4,374,923	+		DZA65_RS20185	0.34	+0.8
4,374,924	-		DZA65_RS20185	0.34	-1.6
4,375,028	+		DZA65_RS20185	0.49	+0.2
4,375,028	+		DZA65_RS20185	0.49	-1.6
4,375,028	+		DZA65_RS20185	0.49	-1.2
4,375,028	+		DZA65_RS20185	0.49	+2.7
4,375,028	+		DZA65_RS20185	0.49	-1.4
4,375,029	-		DZA65_RS20185	0.49	+0.2
4,375,029	-		DZA65_RS20185	0.49	-0.4
4,375,029	-		DZA65_RS20185	0.49	-1.4
4,375,029	-		DZA65_RS20185	0.49	-0.8
4,375,029	-		DZA65_RS20185	0.49	+1.2
4,375,029	-		DZA65_RS20185	0.49	+1.4
4,375,097	+		DZA65_RS20185	0.58	+2.3
4,375,097	+		DZA65_RS20185	0.58	-1.6
4,375,097	+		DZA65_RS20185	0.58	+2.3
4,375,097	+		DZA65_RS20185	0.58	-1.8
4,375,097	+		DZA65_RS20185	0.58	+0.2
4,375,098	-		DZA65_RS20185	0.58	-1.5
4,375,098	-		DZA65_RS20185	0.58	+0.4
4,375,098	-		DZA65_RS20185	0.58	+0.7
4,375,098	-		DZA65_RS20185	0.58	-0.8
4,375,136	+		DZA65_RS20185	0.63	+1.6
4,375,136	+		DZA65_RS20185	0.63	+0.9
4,375,137	-		DZA65_RS20185	0.63	+0.7
4,375,285	+		DZA65_RS20185	0.84	+1.0
4,375,285	+		DZA65_RS20185	0.84	+0.4
4,375,286	-		DZA65_RS20185	0.84	-2.4
4,375,298	+		DZA65_RS20185	0.85	-0.3
4,375,383	+				+3.0
4,375,383	+				+1.6
4,375,383	+				-0.2
4,375,384	-				-1.4
4,375,392	+				-2.3
4,375,392	+				-1.6
4,375,392	+				-1.4
4,375,392	+				-1.2
4,375,392	+				-0.4
4,375,392	+				+0.2
4,375,392	+				+0.2
4,375,392	+				+3.8
4,375,392	+				-0.2
4,375,392	+				-1.8
4,375,392	+				+1.0
4,375,393	-				+1.2
4,375,393	-				+6.6
4,375,393	-				+1.2
4,375,393	-				-4.1
4,375,393	-				-0.8
4,375,393	-				-0.4
4,375,393	-				-2.2
4,375,393	-				+2.7
4,375,403	+				+1.6
4,375,403	+				-0.3
4,375,432	+				+0.5
4,375,432	+				+2.6
4,375,432	+				+0.2
4,375,433	-				+0.2
4,375,439	+				+4.6
4,375,439	+				+1.9
4,375,439	+				-2.4
4,375,439	+				+3.5
4,375,439	+				-0.4
4,375,440	-				+0.2
4,375,440	-				-0.4
4,375,440	-				-1.3
4,375,440	-				+0.7
4,375,440	-				-2.3
4,375,440	-				+1.2
4,375,493	+		DZA65_RS20190	0.19	+1.7
4,375,493	+		DZA65_RS20190	0.19	+0.2
4,375,493	+		DZA65_RS20190	0.19	+1.3
4,375,493	+		DZA65_RS20190	0.19	+0.6
4,375,493	+		DZA65_RS20190	0.19	-0.4
4,375,493	+		DZA65_RS20190	0.19	+0.2
4,375,494	-		DZA65_RS20190	0.19	+2.1
4,375,494	-		DZA65_RS20190	0.19	+2.1
4,375,494	-		DZA65_RS20190	0.19	+1.2
4,375,494	-		DZA65_RS20190	0.19	-0.4
4,375,494	-		DZA65_RS20190	0.19	+0.4
4,375,494	-		DZA65_RS20190	0.19	+1.4
4,375,494	-		DZA65_RS20190	0.19	+0.1
4,375,495	+		DZA65_RS20190	0.19	+2.7
4,375,496	-		DZA65_RS20190	0.20	+1.9
4,375,623	+		DZA65_RS20190	0.52	-1.4
4,375,623	+		DZA65_RS20190	0.52	+0.9
4,375,623	+		DZA65_RS20190	0.52	+1.2
4,375,623	+		DZA65_RS20190	0.52	+1.9
4,375,637	-		DZA65_RS20190	0.55	+0.4
4,375,637	-		DZA65_RS20190	0.55	+1.3
4,375,637	-		DZA65_RS20190	0.55	+2.5
4,375,637	-		DZA65_RS20190	0.55	+1.2
4,375,637	-		DZA65_RS20190	0.55	+1.2