Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19055 and DZA65_RS19060 are separated by 167 nucleotides DZA65_RS19060 and DZA65_RS19065 overlap by 8 nucleotides DZA65_RS19065 and DZA65_RS19070 are separated by 31 nucleotides DZA65_RS19070 and DZA65_RS19075 are separated by 84 nucleotides DZA65_RS19075 and DZA65_RS19080 are separated by 69 nucleotides
DZA65_RS19055: DZA65_RS19055 - GMP reductase, at 4,119,910 to 4,120,950
_RS19055
DZA65_RS19060: DZA65_RS19060 - dephospho-CoA kinase, at 4,121,118 to 4,121,744
_RS19060
DZA65_RS19065: DZA65_RS19065 - cell division protein ZapD, at 4,121,737 to 4,122,486
_RS19065
DZA65_RS19070: DZA65_RS19070 - DNA gyrase inhibitor YacG, at 4,122,518 to 4,122,715
_RS19070
DZA65_RS19075: DZA65_RS19075 - 8-oxo-dGTP diphosphatase MutT, at 4,122,800 to 4,123,201
_RS19075
DZA65_RS19080: DZA65_RS19080 - preprotein translocase subunit SecA, at 4,123,271 to 4,125,964
_RS19080
Position (kb) 4121
4122
4123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4120.756 kb on + strand, within DZA65_RS19055 at 4120.810 kb on + strand, within DZA65_RS19055 at 4120.917 kb on + strand at 4120.917 kb on + strand at 4120.918 kb on - strand at 4120.931 kb on + strand at 4120.933 kb on - strand at 4120.933 kb on - strand at 4120.933 kb on - strand at 4120.944 kb on + strand at 4120.944 kb on + strand at 4120.945 kb on - strand at 4120.945 kb on - strand at 4121.002 kb on + strand at 4121.002 kb on + strand at 4121.003 kb on - strand at 4121.017 kb on + strand at 4121.017 kb on + strand at 4121.017 kb on + strand at 4121.018 kb on - strand at 4121.018 kb on - strand at 4121.018 kb on - strand at 4121.018 kb on - strand at 4121.026 kb on + strand at 4121.026 kb on + strand at 4121.026 kb on + strand at 4121.026 kb on + strand at 4121.027 kb on - strand at 4121.027 kb on - strand at 4121.027 kb on - strand at 4121.027 kb on - strand at 4121.027 kb on - strand at 4121.036 kb on + strand at 4121.076 kb on + strand at 4121.114 kb on + strand at 4121.114 kb on + strand at 4121.114 kb on + strand at 4121.124 kb on + strand at 4121.124 kb on + strand at 4121.124 kb on + strand at 4121.124 kb on + strand at 4121.124 kb on + strand at 4121.124 kb on + strand at 4121.124 kb on + strand at 4121.124 kb on + strand at 4121.124 kb on + strand at 4121.793 kb on + strand at 4121.793 kb on + strand at 4121.793 kb on + strand at 4121.793 kb on + strand at 4121.793 kb on + strand at 4121.794 kb on - strand at 4121.794 kb on - strand at 4121.794 kb on - strand at 4121.794 kb on - strand at 4121.794 kb on - strand at 4121.794 kb on - strand at 4121.794 kb on - strand at 4121.830 kb on + strand, within DZA65_RS19065 at 4121.830 kb on + strand, within DZA65_RS19065 at 4121.853 kb on + strand, within DZA65_RS19065 at 4121.901 kb on + strand, within DZA65_RS19065 at 4122.009 kb on + strand, within DZA65_RS19065 at 4122.009 kb on + strand, within DZA65_RS19065 at 4122.010 kb on - strand, within DZA65_RS19065 at 4122.010 kb on - strand, within DZA65_RS19065 at 4122.010 kb on - strand, within DZA65_RS19065 at 4122.010 kb on - strand, within DZA65_RS19065 at 4122.012 kb on + strand, within DZA65_RS19065 at 4122.012 kb on + strand, within DZA65_RS19065 at 4122.012 kb on + strand, within DZA65_RS19065 at 4122.012 kb on + strand, within DZA65_RS19065 at 4122.012 kb on + strand, within DZA65_RS19065 at 4122.012 kb on + strand, within DZA65_RS19065 at 4122.012 kb on + strand, within DZA65_RS19065 at 4122.013 kb on - strand, within DZA65_RS19065 at 4122.013 kb on - strand, within DZA65_RS19065 at 4122.013 kb on - strand at 4122.013 kb on - strand, within DZA65_RS19065 at 4122.033 kb on + strand, within DZA65_RS19065 at 4122.033 kb on + strand, within DZA65_RS19065 at 4122.081 kb on - strand, within DZA65_RS19065 at 4122.095 kb on + strand, within DZA65_RS19065 at 4122.095 kb on + strand, within DZA65_RS19065 at 4122.095 kb on + strand, within DZA65_RS19065 at 4122.095 kb on + strand, within DZA65_RS19065 at 4122.095 kb on + strand, within DZA65_RS19065 at 4122.095 kb on + strand, within DZA65_RS19065 at 4122.096 kb on - strand, within DZA65_RS19065 at 4122.102 kb on + strand, within DZA65_RS19065 at 4122.102 kb on + strand, within DZA65_RS19065 at 4122.102 kb on + strand, within DZA65_RS19065 at 4122.102 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.107 kb on + strand, within DZA65_RS19065 at 4122.108 kb on - strand, within DZA65_RS19065 at 4122.108 kb on - strand, within DZA65_RS19065 at 4122.108 kb on - strand, within DZA65_RS19065 at 4122.108 kb on - strand, within DZA65_RS19065 at 4122.108 kb on - strand, within DZA65_RS19065 at 4122.108 kb on - strand, within DZA65_RS19065 at 4122.108 kb on - strand, within DZA65_RS19065 at 4122.165 kb on + strand, within DZA65_RS19065 at 4122.165 kb on + strand, within DZA65_RS19065 at 4122.165 kb on + strand, within DZA65_RS19065 at 4122.166 kb on - strand, within DZA65_RS19065 at 4122.173 kb on + strand, within DZA65_RS19065 at 4122.173 kb on + strand, within DZA65_RS19065 at 4122.173 kb on + strand, within DZA65_RS19065 at 4122.173 kb on + strand, within DZA65_RS19065 at 4122.174 kb on - strand, within DZA65_RS19065 at 4122.174 kb on - strand, within DZA65_RS19065 at 4122.174 kb on - strand, within DZA65_RS19065 at 4122.257 kb on + strand, within DZA65_RS19065 at 4122.257 kb on + strand, within DZA65_RS19065 at 4122.258 kb on - strand, within DZA65_RS19065 at 4122.258 kb on - strand, within DZA65_RS19065 at 4122.258 kb on - strand, within DZA65_RS19065 at 4122.258 kb on - strand, within DZA65_RS19065 at 4122.258 kb on - strand, within DZA65_RS19065 at 4122.316 kb on + strand, within DZA65_RS19065 at 4122.316 kb on + strand, within DZA65_RS19065 at 4122.317 kb on - strand, within DZA65_RS19065 at 4122.317 kb on - strand, within DZA65_RS19065 at 4122.324 kb on + strand, within DZA65_RS19065 at 4122.325 kb on - strand, within DZA65_RS19065 at 4122.325 kb on - strand, within DZA65_RS19065 at 4122.347 kb on + strand, within DZA65_RS19065 at 4122.347 kb on + strand, within DZA65_RS19065 at 4122.347 kb on + strand, within DZA65_RS19065 at 4122.347 kb on + strand, within DZA65_RS19065 at 4122.347 kb on + strand, within DZA65_RS19065 at 4122.347 kb on + strand, within DZA65_RS19065 at 4122.347 kb on + strand, within DZA65_RS19065 at 4122.347 kb on + strand, within DZA65_RS19065 at 4122.348 kb on - strand, within DZA65_RS19065 at 4122.348 kb on - strand, within DZA65_RS19065 at 4122.348 kb on - strand, within DZA65_RS19065 at 4122.348 kb on - strand, within DZA65_RS19065 at 4122.348 kb on - strand, within DZA65_RS19065 at 4122.379 kb on + strand, within DZA65_RS19065 at 4122.390 kb on - strand, within DZA65_RS19065 at 4122.399 kb on + strand, within DZA65_RS19065 at 4122.399 kb on + strand, within DZA65_RS19065 at 4122.399 kb on + strand, within DZA65_RS19065 at 4122.399 kb on + strand, within DZA65_RS19065 at 4122.400 kb on - strand, within DZA65_RS19065 at 4122.400 kb on - strand, within DZA65_RS19065 at 4122.484 kb on + strand at 4122.514 kb on + strand at 4122.514 kb on + strand at 4122.514 kb on + strand at 4122.514 kb on + strand at 4122.514 kb on + strand at 4122.515 kb on - strand at 4122.515 kb on - strand at 4122.515 kb on - strand at 4122.515 kb on - strand at 4122.515 kb on - strand at 4122.515 kb on - strand at 4122.540 kb on + strand, within DZA65_RS19070 at 4122.541 kb on - strand, within DZA65_RS19070 at 4122.541 kb on - strand, within DZA65_RS19070 at 4122.550 kb on + strand, within DZA65_RS19070 at 4122.583 kb on + strand, within DZA65_RS19070 at 4122.583 kb on + strand, within DZA65_RS19070 at 4122.676 kb on + strand, within DZA65_RS19070 at 4122.676 kb on + strand, within DZA65_RS19070 at 4122.676 kb on + strand, within DZA65_RS19070 at 4122.676 kb on + strand, within DZA65_RS19070 at 4122.676 kb on + strand, within DZA65_RS19070 at 4122.676 kb on + strand, within DZA65_RS19070 at 4122.676 kb on + strand, within DZA65_RS19070 at 4122.677 kb on - strand, within DZA65_RS19070 at 4122.677 kb on - strand, within DZA65_RS19070 at 4122.713 kb on + strand at 4122.714 kb on - strand at 4122.731 kb on + strand at 4122.732 kb on - strand at 4122.749 kb on + strand at 4122.766 kb on + strand at 4122.767 kb on - strand at 4122.767 kb on - strand at 4122.772 kb on + strand at 4122.773 kb on - strand at 4122.773 kb on - strand at 4122.773 kb on - strand at 4122.773 kb on - strand at 4122.773 kb on - strand at 4122.784 kb on + strand at 4122.784 kb on + strand at 4122.785 kb on - strand at 4122.785 kb on - strand at 4122.797 kb on + strand at 4122.797 kb on + strand at 4122.797 kb on + strand at 4122.798 kb on - strand at 4122.798 kb on - strand at 4122.798 kb on - strand at 4122.956 kb on - strand, within DZA65_RS19075 at 4122.956 kb on - strand, within DZA65_RS19075 at 4122.956 kb on - strand, within DZA65_RS19075 at 4122.956 kb on - strand, within DZA65_RS19075 at 4123.111 kb on + strand, within DZA65_RS19075 at 4123.111 kb on + strand, within DZA65_RS19075 at 4123.111 kb on + strand, within DZA65_RS19075 at 4123.111 kb on + strand, within DZA65_RS19075 at 4123.112 kb on - strand at 4123.112 kb on - strand, within DZA65_RS19075 at 4123.112 kb on - strand, within DZA65_RS19075 at 4123.168 kb on + strand at 4123.184 kb on + strand at 4123.202 kb on + strand at 4123.243 kb on + strand at 4123.243 kb on + strand at 4123.251 kb on - strand at 4123.258 kb on + strand at 4123.273 kb on - strand at 4123.273 kb on - strand at 4123.484 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 4,120,756 + DZA65_RS19055 0.81 +1.0 4,120,810 + DZA65_RS19055 0.86 -0.9 4,120,917 + -1.1 4,120,917 + +0.7 4,120,918 - -0.9 4,120,931 + -0.6 4,120,933 - +2.0 4,120,933 - -0.3 4,120,933 - -1.7 4,120,944 + +0.1 4,120,944 + +1.1 4,120,945 - -0.9 4,120,945 - +0.5 4,121,002 + -0.9 4,121,002 + +0.4 4,121,003 - -0.9 4,121,017 + -1.9 4,121,017 + -1.9 4,121,017 + +0.5 4,121,018 - +0.5 4,121,018 - -1.8 4,121,018 - -1.3 4,121,018 - -0.9 4,121,026 + +1.9 4,121,026 + -0.5 4,121,026 + +0.1 4,121,026 + -1.6 4,121,027 - -1.3 4,121,027 - +1.9 4,121,027 - -2.5 4,121,027 - -1.2 4,121,027 - -0.9 4,121,036 + -2.5 4,121,076 + +0.6 4,121,114 + -2.6 4,121,114 + -0.2 4,121,114 + -0.5 4,121,124 + -0.2 4,121,124 + -0.9 4,121,124 + +0.1 4,121,124 + -0.5 4,121,124 + +0.1 4,121,124 + +1.7 4,121,124 + -2.1 4,121,124 + +1.0 4,121,124 + +0.7 4,121,793 + +1.7 4,121,793 + +1.1 4,121,793 + -0.9 4,121,793 + -0.5 4,121,793 + +1.7 4,121,794 - +0.3 4,121,794 - -0.9 4,121,794 - -0.2 4,121,794 - -0.9 4,121,794 - -0.9 4,121,794 - -2.3 4,121,794 - -0.9 4,121,830 + DZA65_RS19065 0.12 +0.6 4,121,830 + DZA65_RS19065 0.12 -0.2 4,121,853 + DZA65_RS19065 0.15 -3.2 4,121,901 + DZA65_RS19065 0.22 +0.8 4,122,009 + DZA65_RS19065 0.36 +1.7 4,122,009 + DZA65_RS19065 0.36 -3.1 4,122,010 - DZA65_RS19065 0.36 -0.9 4,122,010 - DZA65_RS19065 0.36 +1.7 4,122,010 - DZA65_RS19065 0.36 +0.8 4,122,010 - DZA65_RS19065 0.36 +0.7 4,122,012 + DZA65_RS19065 0.37 +0.1 4,122,012 + DZA65_RS19065 0.37 -0.5 4,122,012 + DZA65_RS19065 0.37 -1.2 4,122,012 + DZA65_RS19065 0.37 -1.2 4,122,012 + DZA65_RS19065 0.37 +1.4 4,122,012 + DZA65_RS19065 0.37 -0.5 4,122,012 + DZA65_RS19065 0.37 +1.4 4,122,013 - DZA65_RS19065 0.37 +3.3 4,122,013 - DZA65_RS19065 0.37 +1.2 4,122,013 - -1.5 4,122,013 - DZA65_RS19065 0.37 -1.5 4,122,033 + DZA65_RS19065 0.39 +0.1 4,122,033 + DZA65_RS19065 0.39 +0.8 4,122,081 - DZA65_RS19065 0.46 -0.6 4,122,095 + DZA65_RS19065 0.48 +1.4 4,122,095 + DZA65_RS19065 0.48 -0.7 4,122,095 + DZA65_RS19065 0.48 +3.1 4,122,095 + DZA65_RS19065 0.48 +2.2 4,122,095 + DZA65_RS19065 0.48 -0.5 4,122,095 + DZA65_RS19065 0.48 -1.5 4,122,096 - DZA65_RS19065 0.48 -0.2 4,122,102 + DZA65_RS19065 0.49 +2.1 4,122,102 + DZA65_RS19065 0.49 +0.1 4,122,102 + DZA65_RS19065 0.49 +1.3 4,122,102 + DZA65_RS19065 0.49 +1.0 4,122,107 + DZA65_RS19065 0.49 +1.2 4,122,107 + DZA65_RS19065 0.49 +1.1 4,122,107 + DZA65_RS19065 0.49 +2.1 4,122,107 + DZA65_RS19065 0.49 +1.1 4,122,107 + DZA65_RS19065 0.49 +1.1 4,122,107 + DZA65_RS19065 0.49 +2.5 4,122,107 + DZA65_RS19065 0.49 +0.4 4,122,107 + DZA65_RS19065 0.49 +0.1 4,122,107 + DZA65_RS19065 0.49 +2.9 4,122,107 + DZA65_RS19065 0.49 +2.4 4,122,107 + DZA65_RS19065 0.49 -2.2 4,122,107 + DZA65_RS19065 0.49 -0.9 4,122,108 - DZA65_RS19065 0.49 -1.2 4,122,108 - DZA65_RS19065 0.49 -3.2 4,122,108 - DZA65_RS19065 0.49 -0.9 4,122,108 - DZA65_RS19065 0.49 +0.2 4,122,108 - DZA65_RS19065 0.49 -1.2 4,122,108 - DZA65_RS19065 0.49 -0.2 4,122,108 - DZA65_RS19065 0.49 -0.7 4,122,165 + DZA65_RS19065 0.57 -0.5 4,122,165 + DZA65_RS19065 0.57 +1.3 4,122,165 + DZA65_RS19065 0.57 -2.2 4,122,166 - DZA65_RS19065 0.57 -0.9 4,122,173 + DZA65_RS19065 0.58 +0.8 4,122,173 + DZA65_RS19065 0.58 +0.1 4,122,173 + DZA65_RS19065 0.58 -0.1 4,122,173 + DZA65_RS19065 0.58 -0.9 4,122,174 - DZA65_RS19065 0.58 +0.1 4,122,174 - DZA65_RS19065 0.58 +0.1 4,122,174 - DZA65_RS19065 0.58 -3.0 4,122,257 + DZA65_RS19065 0.69 +0.7 4,122,257 + DZA65_RS19065 0.69 -0.9 4,122,258 - DZA65_RS19065 0.69 -0.2 4,122,258 - DZA65_RS19065 0.69 -3.4 4,122,258 - DZA65_RS19065 0.69 +0.3 4,122,258 - DZA65_RS19065 0.69 +0.1 4,122,258 - DZA65_RS19065 0.69 -2.2 4,122,316 + DZA65_RS19065 0.77 +1.4 4,122,316 + DZA65_RS19065 0.77 -0.9 4,122,317 - DZA65_RS19065 0.77 -0.9 4,122,317 - DZA65_RS19065 0.77 -3.7 4,122,324 + DZA65_RS19065 0.78 +3.7 4,122,325 - DZA65_RS19065 0.78 +1.7 4,122,325 - DZA65_RS19065 0.78 +0.9 4,122,347 + DZA65_RS19065 0.81 -2.1 4,122,347 + DZA65_RS19065 0.81 -0.9 4,122,347 + DZA65_RS19065 0.81 +0.5 4,122,347 + DZA65_RS19065 0.81 +1.5 4,122,347 + DZA65_RS19065 0.81 +1.4 4,122,347 + DZA65_RS19065 0.81 -1.2 4,122,347 + DZA65_RS19065 0.81 -0.5 4,122,347 + DZA65_RS19065 0.81 +2.6 4,122,348 - DZA65_RS19065 0.81 +2.3 4,122,348 - DZA65_RS19065 0.81 -1.5 4,122,348 - DZA65_RS19065 0.81 +1.1 4,122,348 - DZA65_RS19065 0.81 -0.2 4,122,348 - DZA65_RS19065 0.81 -1.0 4,122,379 + DZA65_RS19065 0.86 +3.1 4,122,390 - DZA65_RS19065 0.87 -0.8 4,122,399 + DZA65_RS19065 0.88 -1.1 4,122,399 + DZA65_RS19065 0.88 -0.5 4,122,399 + DZA65_RS19065 0.88 -0.6 4,122,399 + DZA65_RS19065 0.88 -1.5 4,122,400 - DZA65_RS19065 0.88 -1.9 4,122,400 - DZA65_RS19065 0.88 -1.6 4,122,484 + +0.8 4,122,514 + +2.3 4,122,514 + +0.9 4,122,514 + -1.7 4,122,514 + +0.9 4,122,514 + -1.9 4,122,515 - +1.7 4,122,515 - -2.3 4,122,515 - +0.1 4,122,515 - +0.7 4,122,515 - -0.5 4,122,515 - +1.1 4,122,540 + DZA65_RS19070 0.11 -1.2 4,122,541 - DZA65_RS19070 0.12 -0.5 4,122,541 - DZA65_RS19070 0.12 +0.4 4,122,550 + DZA65_RS19070 0.16 -2.4 4,122,583 + DZA65_RS19070 0.33 +0.1 4,122,583 + DZA65_RS19070 0.33 +1.2 4,122,676 + DZA65_RS19070 0.80 -0.3 4,122,676 + DZA65_RS19070 0.80 -0.2 4,122,676 + DZA65_RS19070 0.80 -1.9 4,122,676 + DZA65_RS19070 0.80 -0.1 4,122,676 + DZA65_RS19070 0.80 +0.1 4,122,676 + DZA65_RS19070 0.80 -1.2 4,122,676 + DZA65_RS19070 0.80 -1.7 4,122,677 - DZA65_RS19070 0.80 +0.5 4,122,677 - DZA65_RS19070 0.80 -0.1 4,122,713 + -0.6 4,122,714 - +0.4 4,122,731 + -1.5 4,122,732 - +0.3 4,122,749 + -2.6 4,122,766 + +1.0 4,122,767 - +1.1 4,122,767 - +1.4 4,122,772 + -1.0 4,122,773 - -1.2 4,122,773 - +0.9 4,122,773 - +0.1 4,122,773 - +0.1 4,122,773 - -1.2 4,122,784 + -2.2 4,122,784 + +0.6 4,122,785 - -0.5 4,122,785 - +3.1 4,122,797 + -1.2 4,122,797 + +0.1 4,122,797 + -2.0 4,122,798 - +1.7 4,122,798 - +1.1 4,122,798 - +0.2 4,122,956 - DZA65_RS19075 0.39 -2.4 4,122,956 - DZA65_RS19075 0.39 +0.4 4,122,956 - DZA65_RS19075 0.39 +0.4 4,122,956 - DZA65_RS19075 0.39 +0.2 4,123,111 + DZA65_RS19075 0.77 -1.5 4,123,111 + DZA65_RS19075 0.77 +0.3 4,123,111 + DZA65_RS19075 0.77 -0.5 4,123,111 + DZA65_RS19075 0.77 -2.1 4,123,112 - -1.7 4,123,112 - DZA65_RS19075 0.78 -0.5 4,123,112 - DZA65_RS19075 0.78 +0.7 4,123,168 + -0.5 4,123,184 + -1.5 4,123,202 + +1.2 4,123,243 + -1.5 4,123,243 + +1.2 4,123,251 - -1.6 4,123,258 + -2.2 4,123,273 - +1.0 4,123,273 - +0.7 4,123,484 - -1.5
Or see this region's nucleotide sequence