Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17360

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,742,970	-				-3.0
3,742,970	-				-1.2
3,742,970	-				-0.8
3,742,981	-				-0.8
3,742,981	-				-1.3
3,743,138	-				-0.0
3,743,147	+				+0.5
3,743,151	+				-1.0
3,743,251	+				+2.2
3,743,255	-				+0.7
3,743,255	-				+1.7
3,743,260	+				-3.3
3,743,260	+				+1.3
3,743,261	-				-1.3
3,743,261	-				-1.6
3,743,278	+				-1.0
3,743,279	-				-0.6
3,743,302	+				+0.7
3,743,302	+				+2.6
3,743,303	-				+1.6
3,743,303	-				-1.0
3,743,440	+				-1.1
3,743,440	+				+0.4
3,743,440	+				-1.3
3,743,440	+				+0.6
3,743,440	+				-1.8
3,743,440	+				+1.9
3,743,440	+				-2.9
3,743,440	+				-2.3
3,743,441	-				-1.0
3,743,441	-				-1.5
3,743,441	-				+0.2
3,743,441	-				-2.0
3,743,441	-				-0.0
3,743,441	-				-0.0
3,743,441	-				-1.8
3,743,441	-				+1.4
3,743,441	-				+1.0
3,743,441	-				-2.7
3,743,441	-				+1.0
3,743,454	-				+0.7
3,743,461	+				+1.0
3,743,500	+				-2.2
3,743,501	-				-0.2
3,743,545	+				-0.1
3,743,545	+				+2.6
3,743,559	-				-0.9
3,743,559	-				-2.7
3,743,568	-				-1.8
3,743,568	-				+1.0
3,743,607	+				-1.8
3,743,608	-				-2.3
3,743,608	-				-0.9
3,743,608	-				+0.2
3,743,693	+				-1.3
3,743,694	-				-0.3
3,743,709	-				+1.1
3,743,709	-				+4.9
3,743,746	+				+2.2
3,743,747	-				-1.0
3,743,747	-				-0.3
3,743,747	-				+1.6
3,743,757	+				-1.8
3,743,757	+				-1.6
3,743,757	+				+0.8
3,743,757	+				-0.6
3,743,757	+				+1.7
3,743,758	-				+0.1
3,743,780	+				+1.6
3,743,789	+				-0.7
3,743,818	+				-1.8
3,743,818	+				-1.6
3,743,818	+				-0.3
3,743,819	-				-0.0
3,743,819	-				+4.4
3,743,819	-				+0.6
3,743,819	-				+1.0
3,743,819	-				-1.3
3,743,819	-				-0.0
3,743,819	-				-1.0
3,743,854	-				-1.8
3,743,854	-				-2.5
3,743,854	-				+1.0
3,743,854	-				+1.6
3,743,854	-				+1.7
3,743,886	-		DZA65_RS17360	0.11	-2.0
3,743,886	-		DZA65_RS17360	0.11	-1.8
3,744,024	+		DZA65_RS17360	0.26	+2.0
3,744,024	+		DZA65_RS17360	0.26	-0.8
3,744,024	+		DZA65_RS17360	0.26	-1.6
3,744,024	+		DZA65_RS17360	0.26	+2.6
3,744,025	-		DZA65_RS17360	0.26	+3.0
3,744,025	-		DZA65_RS17360	0.26	-0.9
3,744,025	-		DZA65_RS17360	0.26	-0.9
3,744,025	-		DZA65_RS17360	0.26	-0.6
3,744,056	+		DZA65_RS17360	0.29	-2.2
3,744,056	+		DZA65_RS17360	0.29	+0.7
3,744,056	+		DZA65_RS17360	0.29	-0.0
3,744,057	-		DZA65_RS17360	0.29	+1.0
3,744,074	+		DZA65_RS17360	0.31	+0.8
3,744,075	-		DZA65_RS17360	0.31	-0.3
3,744,088	+		DZA65_RS17360	0.32	+2.6
3,744,088	+		DZA65_RS17360	0.32	-0.4
3,744,089	-		DZA65_RS17360	0.32	-0.8
3,744,118	-		DZA65_RS17360	0.35	-2.3
3,744,118	-		DZA65_RS17360	0.35	+3.8
3,744,122	+		DZA65_RS17360	0.36	-3.6
3,744,122	+		DZA65_RS17360	0.36	+0.4
3,744,122	+		DZA65_RS17360	0.36	-0.8
3,744,123	-		DZA65_RS17360	0.36	-1.3
3,744,123	-		DZA65_RS17360	0.36	+0.4
3,744,123	-		DZA65_RS17360	0.36	+4.0
3,744,123	-		DZA65_RS17360	0.36	-1.5
3,744,123	-		DZA65_RS17360	0.36	-1.5
3,744,123	-		DZA65_RS17360	0.36	-1.6
3,744,163	+		DZA65_RS17360	0.40	-0.6
3,744,163	+		DZA65_RS17360	0.40	+1.6
3,744,163	+		DZA65_RS17360	0.40	+0.8
3,744,164	-		DZA65_RS17360	0.40	-0.0
3,744,164	-		DZA65_RS17360	0.40	+3.5
3,744,164	-		DZA65_RS17360	0.40	-0.6
3,744,164	-		DZA65_RS17360	0.40	-3.5
3,744,164	-		DZA65_RS17360	0.40	+1.4
3,744,164	-				-2.3
3,744,166	+		DZA65_RS17360	0.40	-2.0
3,744,166	+		DZA65_RS17360	0.40	-1.7
3,744,166	+		DZA65_RS17360	0.40	-3.1
3,744,166	+		DZA65_RS17360	0.40	-1.1
3,744,167	-		DZA65_RS17360	0.41	-0.5
3,744,202	+		DZA65_RS17360	0.44	+2.0
3,744,202	+		DZA65_RS17360	0.44	-2.2
3,744,203	-		DZA65_RS17360	0.44	+1.3
3,744,203	-		DZA65_RS17360	0.44	+0.1
3,744,203	-		DZA65_RS17360	0.44	-0.6
3,744,203	-		DZA65_RS17360	0.44	-1.7
3,744,203	-		DZA65_RS17360	0.44	+5.1
3,744,203	-		DZA65_RS17360	0.44	+0.6
3,744,203	-		DZA65_RS17360	0.44	+1.2
3,744,216	+		DZA65_RS17360	0.46	+0.8
3,744,216	+		DZA65_RS17360	0.46	-0.0
3,744,216	+		DZA65_RS17360	0.46	-0.6
3,744,217	-		DZA65_RS17360	0.46	+0.3
3,744,235	+		DZA65_RS17360	0.48	-1.0
3,744,235	+		DZA65_RS17360	0.48	+1.0
3,744,235	+		DZA65_RS17360	0.48	-0.6
3,744,235	+		DZA65_RS17360	0.48	-0.2
3,744,235	+		DZA65_RS17360	0.48	+0.6
3,744,235	+		DZA65_RS17360	0.48	-2.3
3,744,235	+		DZA65_RS17360	0.48	-2.5
3,744,235	+		DZA65_RS17360	0.48	+1.9
3,744,236	-		DZA65_RS17360	0.48	+1.8
3,744,236	-		DZA65_RS17360	0.48	-1.3
3,744,250	+		DZA65_RS17360	0.49	-0.6
3,744,271	+		DZA65_RS17360	0.52	+1.0
3,744,271	+		DZA65_RS17360	0.52	+1.3
3,744,271	+		DZA65_RS17360	0.52	+1.3
3,744,272	-		DZA65_RS17360	0.52	-0.6
3,744,286	+		DZA65_RS17360	0.53	+1.7
3,744,326	-		DZA65_RS17360	0.57	+1.0
3,744,400	-		DZA65_RS17360	0.65	-0.6
3,744,400	-		DZA65_RS17360	0.65	-1.0
3,744,476	+		DZA65_RS17360	0.73	+0.4
3,744,476	+		DZA65_RS17360	0.73	+2.0
3,744,476	+		DZA65_RS17360	0.73	+1.1
3,744,477	-		DZA65_RS17360	0.73	+2.7
3,744,477	-		DZA65_RS17360	0.73	+4.9
3,744,477	-		DZA65_RS17360	0.73	-2.5
3,744,479	+		DZA65_RS17360	0.73	-0.0
3,744,480	-				-1.0
3,744,550	+		DZA65_RS17360	0.81	-0.6
3,744,551	-		DZA65_RS17360	0.81	-2.1
3,744,551	-		DZA65_RS17360	0.81	-1.0
3,744,553	+		DZA65_RS17360	0.81	-1.6
3,744,554	-		DZA65_RS17360	0.81	-0.0
3,744,568	+		DZA65_RS17360	0.83	-1.2
3,744,569	-		DZA65_RS17360	0.83	-1.0
3,744,569	-		DZA65_RS17360	0.83	-1.0
3,744,661	+				-1.8
3,744,661	+				-1.2
3,744,661	+				+1.8
3,744,661	+				-0.2
3,744,661	+				-0.6
3,744,661	+				+2.1
3,744,661	+				+0.5
3,744,662	-				-1.3
3,744,662	-				-0.9
3,744,662	-				-2.2
3,744,662	-				-0.1
3,744,690	+				+3.3
3,744,729	+				-0.0
3,744,730	-				+0.2